Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0160

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0159 and Echvi_0160 are separated by 172 nucleotidesEchvi_0160 and Echvi_0161 are separated by 196 nucleotides Echvi_0159: Echvi_0159 - Cellulase M and related proteins, at 161,494 to 162,561 _0159 Echvi_0160: Echvi_0160 - Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 162,734 to 164,317 _0160 Echvi_0161: Echvi_0161 - Exopolyphosphatase, at 164,514 to 165,479 _0161 Position (kb) 162 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 161.780 kb on + strand, within Echvi_0159at 161.781 kb on - strand, within Echvi_0159at 161.781 kb on - strand, within Echvi_0159at 161.830 kb on - strand, within Echvi_0159at 161.834 kb on + strand, within Echvi_0159at 161.834 kb on + strand, within Echvi_0159at 161.835 kb on - strand, within Echvi_0159at 161.954 kb on + strand, within Echvi_0159at 161.954 kb on + strand, within Echvi_0159at 161.954 kb on + strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 162.015 kb on + strand, within Echvi_0159at 162.015 kb on - strand, within Echvi_0159at 162.016 kb on - strand, within Echvi_0159at 162.016 kb on - strand, within Echvi_0159at 162.017 kb on + strand, within Echvi_0159at 162.017 kb on + strand, within Echvi_0159at 162.018 kb on - strand, within Echvi_0159at 162.192 kb on + strand, within Echvi_0159at 162.192 kb on + strand, within Echvi_0159at 162.246 kb on + strand, within Echvi_0159at 162.255 kb on + strand, within Echvi_0159at 162.261 kb on + strand, within Echvi_0159at 162.261 kb on + strand, within Echvi_0159at 162.261 kb on + strand, within Echvi_0159at 162.261 kb on + strand, within Echvi_0159at 162.317 kb on + strand, within Echvi_0159at 162.317 kb on + strand, within Echvi_0159at 162.317 kb on + strand, within Echvi_0159at 162.318 kb on - strand, within Echvi_0159at 162.321 kb on + strand, within Echvi_0159at 162.321 kb on + strand, within Echvi_0159at 162.321 kb on + strand, within Echvi_0159at 162.321 kb on + strand, within Echvi_0159at 162.323 kb on + strand, within Echvi_0159at 162.324 kb on - strand, within Echvi_0159at 162.341 kb on + strand, within Echvi_0159at 162.341 kb on + strand, within Echvi_0159at 162.431 kb on + strand, within Echvi_0159at 162.459 kb on - strandat 162.459 kb on - strandat 162.468 kb on + strandat 162.469 kb on - strandat 162.482 kb on - strandat 162.482 kb on - strandat 162.482 kb on - strandat 162.482 kb on - strandat 162.531 kb on - strandat 162.531 kb on - strandat 162.570 kb on + strandat 162.570 kb on + strandat 162.595 kb on - strandat 162.595 kb on - strandat 162.595 kb on - strandat 162.600 kb on + strandat 162.604 kb on + strandat 162.604 kb on + strandat 162.605 kb on - strandat 162.626 kb on - strandat 162.644 kb on + strandat 162.645 kb on - strandat 162.657 kb on + strandat 162.672 kb on - strandat 162.677 kb on - strandat 162.681 kb on + strandat 162.682 kb on - strandat 162.698 kb on + strandat 162.699 kb on - strandat 162.702 kb on + strandat 162.702 kb on + strandat 162.702 kb on + strandat 162.702 kb on + strandat 162.703 kb on - strandat 162.703 kb on - strandat 162.735 kb on + strandat 162.736 kb on - strandat 162.745 kb on + strandat 162.746 kb on - strandat 162.833 kb on + strandat 162.872 kb on - strandat 162.898 kb on - strand, within Echvi_0160at 163.009 kb on + strand, within Echvi_0160at 163.040 kb on - strand, within Echvi_0160at 163.063 kb on - strand, within Echvi_0160at 163.063 kb on - strand, within Echvi_0160at 163.129 kb on - strand, within Echvi_0160at 163.150 kb on + strand, within Echvi_0160at 163.276 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.323 kb on - strand, within Echvi_0160at 163.323 kb on - strand, within Echvi_0160at 163.323 kb on - strand, within Echvi_0160at 163.323 kb on - strand, within Echvi_0160at 163.323 kb on - strand, within Echvi_0160at 163.360 kb on + strand, within Echvi_0160at 163.361 kb on - strand, within Echvi_0160at 163.363 kb on + strand, within Echvi_0160at 163.469 kb on - strand, within Echvi_0160at 163.501 kb on + strand, within Echvi_0160at 163.501 kb on + strand, within Echvi_0160at 163.501 kb on + strand, within Echvi_0160at 163.501 kb on + strand, within Echvi_0160at 163.501 kb on + strand, within Echvi_0160at 163.502 kb on - strand, within Echvi_0160at 163.502 kb on - strand, within Echvi_0160at 163.502 kb on - strand, within Echvi_0160at 163.548 kb on + strand, within Echvi_0160at 163.548 kb on + strand, within Echvi_0160at 163.549 kb on - strand, within Echvi_0160at 163.549 kb on - strand, within Echvi_0160at 163.558 kb on + strand, within Echvi_0160at 163.627 kb on + strand, within Echvi_0160at 163.627 kb on + strand, within Echvi_0160at 163.711 kb on + strand, within Echvi_0160at 163.712 kb on - strand, within Echvi_0160at 163.713 kb on + strand, within Echvi_0160at 163.713 kb on + strand, within Echvi_0160at 163.713 kb on + strand, within Echvi_0160at 163.714 kb on - strand, within Echvi_0160at 163.842 kb on - strand, within Echvi_0160at 163.842 kb on - strand, within Echvi_0160at 163.844 kb on - strand, within Echvi_0160at 164.000 kb on - strand, within Echvi_0160at 164.014 kb on - strand, within Echvi_0160at 164.014 kb on - strand, within Echvi_0160at 164.019 kb on + strand, within Echvi_0160at 164.019 kb on + strand, within Echvi_0160at 164.020 kb on - strand, within Echvi_0160at 164.020 kb on - strand, within Echvi_0160at 164.073 kb on + strand, within Echvi_0160at 164.074 kb on - strand, within Echvi_0160at 164.076 kb on + strand, within Echvi_0160at 164.102 kb on - strand, within Echvi_0160at 164.164 kb on + strandat 164.204 kb on - strandat 164.290 kb on + strandat 164.290 kb on + strandat 164.293 kb on - strandat 164.293 kb on - strandat 164.331 kb on + strandat 164.332 kb on - strandat 164.342 kb on + strandat 164.342 kb on + strandat 164.343 kb on - strandat 164.343 kb on - strandat 164.347 kb on + strandat 164.347 kb on + strandat 164.347 kb on + strandat 164.348 kb on - strandat 164.408 kb on + strandat 164.429 kb on + strandat 164.569 kb on + strandat 164.575 kb on + strandat 164.746 kb on - strand, within Echvi_0161at 164.797 kb on + strand, within Echvi_0161at 164.868 kb on + strand, within Echvi_0161at 164.868 kb on + strand, within Echvi_0161at 165.027 kb on + strand, within Echvi_0161at 165.088 kb on + strand, within Echvi_0161at 165.088 kb on + strand, within Echvi_0161at 165.110 kb on + strand, within Echvi_0161at 165.110 kb on + strand, within Echvi_0161at 165.174 kb on + strand, within Echvi_0161at 165.174 kb on + strand, within Echvi_0161at 165.174 kb on + strand, within Echvi_0161at 165.175 kb on - strand, within Echvi_0161at 165.175 kb on - strand, within Echvi_0161at 165.175 kb on - strand, within Echvi_0161at 165.177 kb on + strand, within Echvi_0161at 165.177 kb on + strand, within Echvi_0161at 165.178 kb on - strand, within Echvi_0161at 165.178 kb on - strand, within Echvi_0161

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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161,780 + Echvi_0159 0.27 -0.5
161,781 - Echvi_0159 0.27 -0.7
161,781 - Echvi_0159 0.27 -0.9
161,830 - Echvi_0159 0.31 +0.5
161,834 + Echvi_0159 0.32 -1.1
161,834 + Echvi_0159 0.32 -0.3
161,835 - Echvi_0159 0.32 +0.5
161,954 + Echvi_0159 0.43 -0.2
161,954 + Echvi_0159 0.43 -0.2
161,954 + Echvi_0159 0.43 +0.2
161,955 - Echvi_0159 0.43 +0.4
161,955 - Echvi_0159 0.43 +0.6
161,955 - Echvi_0159 0.43 -0.5
161,955 - Echvi_0159 0.43 +1.0
162,015 + Echvi_0159 0.49 +0.1
162,015 - Echvi_0159 0.49 +0.6
162,016 - Echvi_0159 0.49 +0.4
162,016 - Echvi_0159 0.49 -1.7
162,017 + Echvi_0159 0.49 +0.6
162,017 + Echvi_0159 0.49 +0.1
162,018 - Echvi_0159 0.49 -0.4
162,192 + Echvi_0159 0.65 +0.8
162,192 + Echvi_0159 0.65 +0.3
162,246 + Echvi_0159 0.70 +0.4
162,255 + Echvi_0159 0.71 +0.1
162,261 + Echvi_0159 0.72 -0.3
162,261 + Echvi_0159 0.72 -0.0
162,261 + Echvi_0159 0.72 +0.1
162,261 + Echvi_0159 0.72 -0.1
162,317 + Echvi_0159 0.77 +1.2
162,317 + Echvi_0159 0.77 -0.7
162,317 + Echvi_0159 0.77 -0.7
162,318 - Echvi_0159 0.77 +0.7
162,321 + Echvi_0159 0.77 +2.4
162,321 + Echvi_0159 0.77 +0.1
162,321 + Echvi_0159 0.77 +0.3
162,321 + Echvi_0159 0.77 +0.3
162,323 + Echvi_0159 0.78 -0.7
162,324 - Echvi_0159 0.78 -1.3
162,341 + Echvi_0159 0.79 +0.4
162,341 + Echvi_0159 0.79 -1.2
162,431 + Echvi_0159 0.88 +0.2
162,459 - +0.1
162,459 - -1.6
162,468 + -0.0
162,469 - +0.2
162,482 - -1.3
162,482 - -0.5
162,482 - +0.1
162,482 - -2.4
162,531 - +2.2
162,531 - +0.9
162,570 + -1.3
162,570 + -0.7
162,595 - +0.2
162,595 - +0.3
162,595 - +0.6
162,600 + +0.5
162,604 + -0.4
162,604 + -1.2
162,605 - -0.2
162,626 - -0.7
162,644 + +0.6
162,645 - +0.6
162,657 + +0.6
162,672 - +0.3
162,677 - +0.0
162,681 + +1.4
162,682 - -0.3
162,698 + -0.4
162,699 - +0.6
162,702 + +1.3
162,702 + +0.2
162,702 + -0.2
162,702 + +0.4
162,703 - -0.2
162,703 - +1.3
162,735 + +0.4
162,736 - +0.5
162,745 + -0.4
162,746 - -0.2
162,833 + +0.3
162,872 - +0.8
162,898 - Echvi_0160 0.10 -0.4
163,009 + Echvi_0160 0.17 +0.6
163,040 - Echvi_0160 0.19 +0.2
163,063 - Echvi_0160 0.21 -0.2
163,063 - Echvi_0160 0.21 -0.1
163,129 - Echvi_0160 0.25 -0.2
163,150 + Echvi_0160 0.26 -0.1
163,276 + Echvi_0160 0.34 +0.0
163,322 + Echvi_0160 0.37 +0.7
163,322 + Echvi_0160 0.37 -0.2
163,322 + Echvi_0160 0.37 +1.3
163,322 + Echvi_0160 0.37 -2.1
163,322 + Echvi_0160 0.37 +0.0
163,322 + Echvi_0160 0.37 -0.0
163,322 + Echvi_0160 0.37 +0.3
163,322 + Echvi_0160 0.37 +0.1
163,323 - Echvi_0160 0.37 -0.2
163,323 - Echvi_0160 0.37 +0.1
163,323 - Echvi_0160 0.37 +0.1
163,323 - Echvi_0160 0.37 +0.2
163,323 - Echvi_0160 0.37 -0.2
163,360 + Echvi_0160 0.40 -1.6
163,361 - Echvi_0160 0.40 -0.9
163,363 + Echvi_0160 0.40 -1.0
163,469 - Echvi_0160 0.46 +0.7
163,501 + Echvi_0160 0.48 +0.3
163,501 + Echvi_0160 0.48 +0.6
163,501 + Echvi_0160 0.48 +0.1
163,501 + Echvi_0160 0.48 -0.2
163,501 + Echvi_0160 0.48 +1.7
163,502 - Echvi_0160 0.48 -0.1
163,502 - Echvi_0160 0.48 -0.3
163,502 - Echvi_0160 0.48 -2.1
163,548 + Echvi_0160 0.51 -0.5
163,548 + Echvi_0160 0.51 +0.2
163,549 - Echvi_0160 0.51 +0.2
163,549 - Echvi_0160 0.51 +1.8
163,558 + Echvi_0160 0.52 +0.3
163,627 + Echvi_0160 0.56 -1.4
163,627 + Echvi_0160 0.56 +0.0
163,711 + Echvi_0160 0.62 +0.6
163,712 - Echvi_0160 0.62 -0.4
163,713 + Echvi_0160 0.62 -0.9
163,713 + Echvi_0160 0.62 -1.1
163,713 + Echvi_0160 0.62 -0.2
163,714 - Echvi_0160 0.62 +0.4
163,842 - Echvi_0160 0.70 +0.4
163,842 - Echvi_0160 0.70 +0.5
163,844 - Echvi_0160 0.70 +0.4
164,000 - Echvi_0160 0.80 +0.0
164,014 - Echvi_0160 0.81 -2.5
164,014 - Echvi_0160 0.81 +0.2
164,019 + Echvi_0160 0.81 -0.6
164,019 + Echvi_0160 0.81 +1.2
164,020 - Echvi_0160 0.81 +0.8
164,020 - Echvi_0160 0.81 +0.9
164,073 + Echvi_0160 0.85 -0.1
164,074 - Echvi_0160 0.85 +0.4
164,076 + Echvi_0160 0.85 +1.0
164,102 - Echvi_0160 0.86 -0.3
164,164 + +0.2
164,204 - -1.1
164,290 + -0.4
164,290 + -0.1
164,293 - -0.5
164,293 - -0.1
164,331 + -0.2
164,332 - +2.3
164,342 + -0.4
164,342 + +0.8
164,343 - +0.0
164,343 - +0.8
164,347 + -0.2
164,347 + +0.2
164,347 + -0.2
164,348 - +0.5
164,408 + +0.6
164,429 + -0.1
164,569 + +0.8
164,575 + -0.7
164,746 - Echvi_0161 0.24 -2.2
164,797 + Echvi_0161 0.29 -0.4
164,868 + Echvi_0161 0.37 +1.8
164,868 + Echvi_0161 0.37 -1.5
165,027 + Echvi_0161 0.53 +0.6
165,088 + Echvi_0161 0.59 -2.2
165,088 + Echvi_0161 0.59 +1.0
165,110 + Echvi_0161 0.62 -0.9
165,110 + Echvi_0161 0.62 -1.9
165,174 + Echvi_0161 0.68 -1.3
165,174 + Echvi_0161 0.68 -0.2
165,174 + Echvi_0161 0.68 +0.6
165,175 - Echvi_0161 0.68 -2.6
165,175 - Echvi_0161 0.68 -2.6
165,175 - Echvi_0161 0.68 -0.6
165,177 + Echvi_0161 0.69 -0.5
165,177 + Echvi_0161 0.69 +0.3
165,178 - Echvi_0161 0.69 -2.2
165,178 - Echvi_0161 0.69 +0.8

Or see this region's nucleotide sequence