Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21510 and CA264_21515 are separated by 324 nucleotides CA264_21515 and CA264_21520 are separated by 39 nucleotides CA264_21520 and CA264_21525 are separated by 156 nucleotides
CA264_21510: CA264_21510 - copper oxidase, at 170,408 to 172,942
_21510
CA264_21515: CA264_21515 - MATE family efflux transporter, at 173,267 to 174,706
_21515
CA264_21520: CA264_21520 - hypothetical protein, at 174,746 to 175,450
_21520
CA264_21525: CA264_21525 - DUF305 domain-containing protein, at 175,607 to 176,320
_21525
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2 at 172.284 kb on + strand, within CA264_21510 at 172.285 kb on - strand, within CA264_21510 at 172.285 kb on - strand, within CA264_21510 at 172.285 kb on - strand, within CA264_21510 at 172.285 kb on - strand, within CA264_21510 at 172.319 kb on - strand, within CA264_21510 at 172.330 kb on - strand, within CA264_21510 at 172.360 kb on - strand, within CA264_21510 at 172.448 kb on + strand, within CA264_21510 at 172.449 kb on - strand, within CA264_21510 at 172.475 kb on - strand, within CA264_21510 at 172.482 kb on + strand, within CA264_21510 at 172.482 kb on + strand, within CA264_21510 at 172.483 kb on - strand, within CA264_21510 at 172.515 kb on - strand, within CA264_21510 at 172.570 kb on + strand, within CA264_21510 at 172.626 kb on + strand, within CA264_21510 at 172.698 kb on - strand at 172.909 kb on + strand at 172.909 kb on + strand at 172.918 kb on + strand at 172.952 kb on - strand at 172.952 kb on - strand at 172.953 kb on + strand at 172.953 kb on + strand at 172.953 kb on + strand at 173.004 kb on + strand at 173.005 kb on - strand at 173.005 kb on - strand at 173.011 kb on - strand at 173.052 kb on + strand at 173.060 kb on - strand at 173.068 kb on - strand at 173.112 kb on + strand at 173.112 kb on + strand at 173.113 kb on - strand at 173.113 kb on - strand at 173.113 kb on - strand at 173.116 kb on - strand at 173.116 kb on - strand at 173.116 kb on - strand at 173.116 kb on - strand at 173.141 kb on - strand at 173.141 kb on - strand at 173.141 kb on - strand at 173.158 kb on + strand at 173.158 kb on + strand at 173.158 kb on + strand at 173.159 kb on - strand at 173.166 kb on - strand at 173.168 kb on + strand at 173.168 kb on + strand at 173.169 kb on - strand at 173.169 kb on - strand at 173.192 kb on + strand at 173.200 kb on + strand at 173.245 kb on - strand at 173.265 kb on - strand at 173.268 kb on + strand at 173.268 kb on + strand at 173.269 kb on - strand at 173.269 kb on - strand at 173.271 kb on + strand at 173.276 kb on - strand at 173.276 kb on - strand at 173.279 kb on - strand at 173.362 kb on + strand at 173.379 kb on + strand at 173.413 kb on + strand, within CA264_21515 at 173.413 kb on + strand, within CA264_21515 at 173.438 kb on - strand, within CA264_21515 at 173.466 kb on + strand, within CA264_21515 at 173.466 kb on + strand, within CA264_21515 at 173.467 kb on - strand, within CA264_21515 at 173.467 kb on - strand, within CA264_21515 at 173.470 kb on - strand, within CA264_21515 at 173.497 kb on + strand, within CA264_21515 at 173.497 kb on + strand, within CA264_21515 at 173.514 kb on + strand, within CA264_21515 at 173.547 kb on + strand, within CA264_21515 at 173.548 kb on - strand, within CA264_21515 at 173.568 kb on - strand, within CA264_21515 at 173.729 kb on + strand, within CA264_21515 at 173.756 kb on + strand, within CA264_21515 at 173.757 kb on - strand, within CA264_21515 at 173.757 kb on - strand, within CA264_21515 at 173.771 kb on + strand, within CA264_21515 at 173.771 kb on + strand, within CA264_21515 at 173.772 kb on - strand, within CA264_21515 at 173.795 kb on - strand, within CA264_21515 at 173.824 kb on + strand, within CA264_21515 at 173.826 kb on + strand, within CA264_21515 at 173.827 kb on - strand, within CA264_21515 at 173.904 kb on + strand, within CA264_21515 at 173.934 kb on - strand, within CA264_21515 at 173.962 kb on + strand, within CA264_21515 at 174.040 kb on - strand, within CA264_21515 at 174.042 kb on + strand, within CA264_21515 at 174.136 kb on + strand, within CA264_21515 at 174.144 kb on + strand, within CA264_21515 at 174.175 kb on + strand, within CA264_21515 at 174.176 kb on - strand, within CA264_21515 at 174.293 kb on + strand, within CA264_21515 at 174.302 kb on + strand, within CA264_21515 at 174.303 kb on - strand, within CA264_21515 at 174.303 kb on - strand, within CA264_21515 at 174.395 kb on - strand, within CA264_21515 at 174.395 kb on - strand, within CA264_21515 at 174.479 kb on + strand, within CA264_21515 at 174.501 kb on + strand, within CA264_21515 at 174.502 kb on - strand, within CA264_21515 at 174.590 kb on - strand at 174.612 kb on - strand at 174.614 kb on + strand at 174.653 kb on - strand at 174.683 kb on + strand at 174.686 kb on + strand at 174.686 kb on + strand at 174.686 kb on + strand at 174.713 kb on + strand at 174.714 kb on - strand at 174.714 kb on - strand at 174.714 kb on - strand at 174.714 kb on - strand at 174.726 kb on - strand at 174.801 kb on + strand at 174.801 kb on + strand at 174.802 kb on - strand at 174.811 kb on + strand at 174.813 kb on + strand at 174.813 kb on + strand at 174.814 kb on - strand at 174.815 kb on + strand at 174.815 kb on + strand at 174.815 kb on + strand at 174.869 kb on - strand, within CA264_21520 at 174.925 kb on - strand, within CA264_21520 at 174.935 kb on - strand, within CA264_21520 at 174.949 kb on + strand, within CA264_21520 at 174.984 kb on - strand, within CA264_21520 at 174.998 kb on + strand, within CA264_21520 at 174.999 kb on - strand, within CA264_21520 at 174.999 kb on - strand, within CA264_21520 at 175.104 kb on + strand, within CA264_21520 at 175.182 kb on - strand, within CA264_21520 at 175.183 kb on + strand, within CA264_21520 at 175.184 kb on - strand, within CA264_21520 at 175.184 kb on - strand, within CA264_21520 at 175.191 kb on + strand, within CA264_21520 at 175.300 kb on + strand, within CA264_21520 at 175.322 kb on + strand, within CA264_21520 at 175.322 kb on + strand, within CA264_21520 at 175.384 kb on + strand at 175.384 kb on + strand at 175.385 kb on - strand at 175.385 kb on - strand at 175.385 kb on - strand at 175.420 kb on - strand at 175.420 kb on - strand at 175.441 kb on + strand at 175.450 kb on + strand at 175.467 kb on - strand at 175.469 kb on + strand at 175.470 kb on - strand at 175.470 kb on - strand at 175.471 kb on + strand at 175.471 kb on + strand at 175.471 kb on + strand at 175.471 kb on + strand at 175.471 kb on + strand at 175.540 kb on - strand at 175.583 kb on + strand at 175.609 kb on - strand at 175.668 kb on - strand at 175.691 kb on + strand, within CA264_21525 at 175.692 kb on - strand, within CA264_21525
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 172,284 + CA264_21510 0.74 -0.8 172,285 - CA264_21510 0.74 -0.2 172,285 - CA264_21510 0.74 +0.1 172,285 - CA264_21510 0.74 +0.8 172,285 - CA264_21510 0.74 -0.9 172,319 - CA264_21510 0.75 +0.4 172,330 - CA264_21510 0.76 -0.5 172,360 - CA264_21510 0.77 -0.2 172,448 + CA264_21510 0.80 +0.1 172,449 - CA264_21510 0.81 -1.4 172,475 - CA264_21510 0.82 +0.2 172,482 + CA264_21510 0.82 +0.2 172,482 + CA264_21510 0.82 +0.3 172,483 - CA264_21510 0.82 -1.0 172,515 - CA264_21510 0.83 -0.9 172,570 + CA264_21510 0.85 +0.1 172,626 + CA264_21510 0.87 -2.4 172,698 - +0.5 172,909 + -0.4 172,909 + -0.0 172,918 + -0.3 172,952 - -0.4 172,952 - +1.9 172,953 + -0.4 172,953 + -0.7 172,953 + +0.1 173,004 + +0.4 173,005 - -0.5 173,005 - -1.6 173,011 - -0.4 173,052 + -1.0 173,060 - +1.1 173,068 - -0.1 173,112 + -1.1 173,112 + +0.0 173,113 - +0.0 173,113 - -0.3 173,113 - +0.7 173,116 - +1.0 173,116 - -0.1 173,116 - +1.7 173,116 - +0.5 173,141 - -0.2 173,141 - -1.0 173,141 - -0.3 173,158 + -0.3 173,158 + -0.2 173,158 + +1.0 173,159 - +0.9 173,166 - -0.3 173,168 + +0.0 173,168 + +0.3 173,169 - -0.2 173,169 - +1.1 173,192 + +0.2 173,200 + -0.8 173,245 - -1.5 173,265 - +0.0 173,268 + -0.9 173,268 + +0.3 173,269 - +0.1 173,269 - -0.2 173,271 + -0.1 173,276 - -1.6 173,276 - -0.1 173,279 - +1.1 173,362 + -0.6 173,379 + +0.3 173,413 + CA264_21515 0.10 -0.5 173,413 + CA264_21515 0.10 +0.5 173,438 - CA264_21515 0.12 -0.4 173,466 + CA264_21515 0.14 -0.0 173,466 + CA264_21515 0.14 +0.4 173,467 - CA264_21515 0.14 +0.7 173,467 - CA264_21515 0.14 -0.4 173,470 - CA264_21515 0.14 +0.1 173,497 + CA264_21515 0.16 +0.1 173,497 + CA264_21515 0.16 -0.2 173,514 + CA264_21515 0.17 +0.7 173,547 + CA264_21515 0.19 +0.0 173,548 - CA264_21515 0.20 -0.8 173,568 - CA264_21515 0.21 -0.7 173,729 + CA264_21515 0.32 +0.4 173,756 + CA264_21515 0.34 +0.5 173,757 - CA264_21515 0.34 +0.1 173,757 - CA264_21515 0.34 -0.4 173,771 + CA264_21515 0.35 -0.5 173,771 + CA264_21515 0.35 -0.1 173,772 - CA264_21515 0.35 -0.2 173,795 - CA264_21515 0.37 +0.6 173,824 + CA264_21515 0.39 -0.6 173,826 + CA264_21515 0.39 -0.2 173,827 - CA264_21515 0.39 -0.3 173,904 + CA264_21515 0.44 -0.2 173,934 - CA264_21515 0.46 +0.0 173,962 + CA264_21515 0.48 -0.1 174,040 - CA264_21515 0.54 +0.9 174,042 + CA264_21515 0.54 -0.8 174,136 + CA264_21515 0.60 -0.6 174,144 + CA264_21515 0.61 +0.8 174,175 + CA264_21515 0.63 -0.9 174,176 - CA264_21515 0.63 +0.9 174,293 + CA264_21515 0.71 +0.2 174,302 + CA264_21515 0.72 -0.3 174,303 - CA264_21515 0.72 +1.0 174,303 - CA264_21515 0.72 -1.4 174,395 - CA264_21515 0.78 -0.8 174,395 - CA264_21515 0.78 -1.1 174,479 + CA264_21515 0.84 +0.8 174,501 + CA264_21515 0.86 -1.0 174,502 - CA264_21515 0.86 +0.1 174,590 - -0.0 174,612 - +0.6 174,614 + +0.5 174,653 - -0.4 174,683 + +0.7 174,686 + +0.1 174,686 + +0.0 174,686 + +0.1 174,713 + -0.1 174,714 - +0.7 174,714 - +2.1 174,714 - +0.5 174,714 - -0.1 174,726 - +0.9 174,801 + +1.0 174,801 + -0.9 174,802 - +0.5 174,811 + -0.5 174,813 + -0.8 174,813 + +1.1 174,814 - -2.1 174,815 + +1.7 174,815 + -0.5 174,815 + -0.3 174,869 - CA264_21520 0.17 -0.8 174,925 - CA264_21520 0.25 -0.7 174,935 - CA264_21520 0.27 +0.2 174,949 + CA264_21520 0.29 -1.0 174,984 - CA264_21520 0.34 -0.2 174,998 + CA264_21520 0.36 +0.8 174,999 - CA264_21520 0.36 -0.6 174,999 - CA264_21520 0.36 -0.6 175,104 + CA264_21520 0.51 -0.6 175,182 - CA264_21520 0.62 -0.4 175,183 + CA264_21520 0.62 -1.2 175,184 - CA264_21520 0.62 -1.5 175,184 - CA264_21520 0.62 -0.1 175,191 + CA264_21520 0.63 -0.2 175,300 + CA264_21520 0.79 -1.3 175,322 + CA264_21520 0.82 -2.0 175,322 + CA264_21520 0.82 -0.6 175,384 + -0.8 175,384 + -0.0 175,385 - +0.5 175,385 - +0.4 175,385 - -0.1 175,420 - +0.2 175,420 - +0.6 175,441 + -1.0 175,450 + -0.3 175,467 - -1.0 175,469 + +0.3 175,470 - -1.0 175,470 - -0.1 175,471 + +1.1 175,471 + +0.3 175,471 + +1.7 175,471 + -0.3 175,471 + +0.6 175,540 - -0.3 175,583 + -0.6 175,609 - -0.7 175,668 - -0.1 175,691 + CA264_21525 0.12 +1.6 175,692 - CA264_21525 0.12 -0.1
Or see this region's nucleotide sequence