Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20380

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20370 and CA264_20375 are separated by 88 nucleotidesCA264_20375 and CA264_20380 are separated by 74 nucleotidesCA264_20380 and CA264_20385 are separated by 310 nucleotides CA264_20370: CA264_20370 - MFS transporter, at 4,694,374 to 4,695,693 _20370 CA264_20375: CA264_20375 - hypothetical protein, at 4,695,782 to 4,696,060 _20375 CA264_20380: CA264_20380 - lytic transglycosylase, at 4,696,135 to 4,698,423 _20380 CA264_20385: CA264_20385 - methyltransferase, at 4,698,734 to 4,699,378 _20385 Position (kb) 4696 4697 4698 4699Strain fitness (log2 ratio) -1 0 1 2 3at 4695.170 kb on - strand, within CA264_20370at 4695.518 kb on - strand, within CA264_20370at 4695.691 kb on + strandat 4695.691 kb on + strandat 4695.705 kb on + strandat 4695.706 kb on - strandat 4695.779 kb on - strandat 4695.781 kb on + strandat 4695.781 kb on + strandat 4695.781 kb on + strandat 4695.782 kb on - strandat 4695.782 kb on - strandat 4695.782 kb on - strandat 4695.782 kb on - strandat 4695.782 kb on - strandat 4695.916 kb on + strand, within CA264_20375at 4695.916 kb on + strand, within CA264_20375at 4695.916 kb on + strand, within CA264_20375at 4695.917 kb on - strand, within CA264_20375at 4695.917 kb on - strand, within CA264_20375at 4696.042 kb on + strandat 4696.043 kb on - strandat 4696.058 kb on + strandat 4696.058 kb on + strandat 4696.114 kb on + strandat 4696.115 kb on - strandat 4696.122 kb on - strandat 4696.122 kb on - strandat 4696.122 kb on - strandat 4696.122 kb on - strandat 4696.244 kb on + strandat 4696.244 kb on + strandat 4696.245 kb on - strandat 4696.264 kb on + strandat 4696.265 kb on - strandat 4696.269 kb on + strandat 4696.270 kb on - strandat 4696.274 kb on + strandat 4696.275 kb on - strandat 4696.275 kb on - strandat 4696.347 kb on + strandat 4696.354 kb on + strandat 4696.426 kb on - strand, within CA264_20380at 4696.427 kb on + strand, within CA264_20380at 4696.428 kb on - strand, within CA264_20380at 4696.615 kb on + strand, within CA264_20380at 4696.616 kb on - strand, within CA264_20380at 4696.629 kb on + strand, within CA264_20380at 4696.655 kb on + strand, within CA264_20380at 4696.656 kb on - strand, within CA264_20380at 4696.743 kb on + strand, within CA264_20380at 4696.783 kb on + strand, within CA264_20380at 4696.784 kb on - strand, within CA264_20380at 4696.924 kb on + strand, within CA264_20380at 4697.071 kb on - strand, within CA264_20380at 4697.074 kb on - strand, within CA264_20380at 4697.074 kb on - strand, within CA264_20380at 4697.129 kb on + strand, within CA264_20380at 4697.130 kb on - strand, within CA264_20380at 4697.130 kb on - strand, within CA264_20380at 4697.240 kb on - strand, within CA264_20380at 4697.265 kb on + strand, within CA264_20380at 4697.295 kb on - strand, within CA264_20380at 4697.378 kb on + strand, within CA264_20380at 4697.378 kb on + strand, within CA264_20380at 4697.379 kb on - strand, within CA264_20380at 4697.379 kb on - strand, within CA264_20380at 4697.379 kb on - strand, within CA264_20380at 4697.379 kb on - strand, within CA264_20380at 4697.381 kb on + strand, within CA264_20380at 4697.399 kb on - strand, within CA264_20380at 4697.414 kb on + strand, within CA264_20380at 4697.414 kb on + strand, within CA264_20380at 4697.415 kb on - strand, within CA264_20380at 4697.415 kb on - strand, within CA264_20380at 4697.639 kb on + strand, within CA264_20380at 4697.639 kb on + strand, within CA264_20380at 4697.639 kb on + strand, within CA264_20380at 4697.640 kb on - strand, within CA264_20380at 4697.661 kb on + strand, within CA264_20380at 4697.662 kb on - strand, within CA264_20380at 4697.687 kb on + strand, within CA264_20380at 4697.687 kb on + strand, within CA264_20380at 4697.846 kb on + strand, within CA264_20380at 4697.906 kb on + strand, within CA264_20380at 4697.907 kb on - strand, within CA264_20380at 4697.933 kb on + strand, within CA264_20380at 4697.934 kb on - strand, within CA264_20380at 4697.936 kb on + strand, within CA264_20380at 4697.966 kb on + strand, within CA264_20380at 4697.986 kb on - strand, within CA264_20380at 4698.233 kb on - strandat 4698.286 kb on + strandat 4698.532 kb on - strandat 4698.607 kb on - strandat 4698.660 kb on + strandat 4698.661 kb on - strandat 4698.662 kb on + strandat 4698.733 kb on - strandat 4698.862 kb on - strand, within CA264_20385at 4698.904 kb on + strand, within CA264_20385at 4698.904 kb on + strand, within CA264_20385at 4698.905 kb on - strand, within CA264_20385at 4698.945 kb on + strand, within CA264_20385at 4698.945 kb on + strand, within CA264_20385at 4698.945 kb on + strand, within CA264_20385at 4699.224 kb on + strand, within CA264_20385

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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4,695,170 - CA264_20370 0.60 -0.7
4,695,518 - CA264_20370 0.87 -0.6
4,695,691 + -0.7
4,695,691 + -0.4
4,695,705 + -1.2
4,695,706 - +0.1
4,695,779 - +0.4
4,695,781 + -0.8
4,695,781 + +1.7
4,695,781 + -0.2
4,695,782 - +0.2
4,695,782 - -0.6
4,695,782 - -0.6
4,695,782 - +0.7
4,695,782 - +0.5
4,695,916 + CA264_20375 0.48 -0.3
4,695,916 + CA264_20375 0.48 +0.3
4,695,916 + CA264_20375 0.48 +0.5
4,695,917 - CA264_20375 0.48 +0.2
4,695,917 - CA264_20375 0.48 +1.3
4,696,042 + -0.5
4,696,043 - -1.6
4,696,058 + -0.2
4,696,058 + +0.5
4,696,114 + +0.2
4,696,115 - -0.2
4,696,122 - -0.4
4,696,122 - +0.2
4,696,122 - +0.1
4,696,122 - -0.2
4,696,244 + +1.0
4,696,244 + +0.8
4,696,245 - -0.2
4,696,264 + +0.8
4,696,265 - -0.1
4,696,269 + +1.5
4,696,270 - +0.2
4,696,274 + +0.8
4,696,275 - +0.4
4,696,275 - +0.7
4,696,347 + +1.0
4,696,354 + +1.4
4,696,426 - CA264_20380 0.13 +0.3
4,696,427 + CA264_20380 0.13 +2.3
4,696,428 - CA264_20380 0.13 +0.0
4,696,615 + CA264_20380 0.21 +2.3
4,696,616 - CA264_20380 0.21 +0.9
4,696,629 + CA264_20380 0.22 -0.1
4,696,655 + CA264_20380 0.23 +1.3
4,696,656 - CA264_20380 0.23 +0.3
4,696,743 + CA264_20380 0.27 +1.5
4,696,783 + CA264_20380 0.28 +1.7
4,696,784 - CA264_20380 0.28 +1.5
4,696,924 + CA264_20380 0.34 +1.9
4,697,071 - CA264_20380 0.41 +1.6
4,697,074 - CA264_20380 0.41 +1.1
4,697,074 - CA264_20380 0.41 +0.6
4,697,129 + CA264_20380 0.43 +1.2
4,697,130 - CA264_20380 0.43 +1.7
4,697,130 - CA264_20380 0.43 +1.6
4,697,240 - CA264_20380 0.48 +1.5
4,697,265 + CA264_20380 0.49 +2.1
4,697,295 - CA264_20380 0.51 +3.0
4,697,378 + CA264_20380 0.54 +3.3
4,697,378 + CA264_20380 0.54 +1.6
4,697,379 - CA264_20380 0.54 +3.0
4,697,379 - CA264_20380 0.54 -0.7
4,697,379 - CA264_20380 0.54 +2.1
4,697,379 - CA264_20380 0.54 +2.2
4,697,381 + CA264_20380 0.54 +1.3
4,697,399 - CA264_20380 0.55 +1.7
4,697,414 + CA264_20380 0.56 +1.9
4,697,414 + CA264_20380 0.56 +2.0
4,697,415 - CA264_20380 0.56 +1.9
4,697,415 - CA264_20380 0.56 +1.9
4,697,639 + CA264_20380 0.66 +2.1
4,697,639 + CA264_20380 0.66 +2.4
4,697,639 + CA264_20380 0.66 +1.5
4,697,640 - CA264_20380 0.66 +2.2
4,697,661 + CA264_20380 0.67 +3.1
4,697,662 - CA264_20380 0.67 +1.5
4,697,687 + CA264_20380 0.68 +1.6
4,697,687 + CA264_20380 0.68 +1.7
4,697,846 + CA264_20380 0.75 +1.5
4,697,906 + CA264_20380 0.77 +2.1
4,697,907 - CA264_20380 0.77 +2.0
4,697,933 + CA264_20380 0.79 +2.1
4,697,934 - CA264_20380 0.79 +2.2
4,697,936 + CA264_20380 0.79 +2.2
4,697,966 + CA264_20380 0.80 +2.0
4,697,986 - CA264_20380 0.81 +1.3
4,698,233 - +2.0
4,698,286 + +2.0
4,698,532 - +0.9
4,698,607 - +0.6
4,698,660 + +0.1
4,698,661 - +0.3
4,698,662 + -0.1
4,698,733 - -0.1
4,698,862 - CA264_20385 0.20 +0.1
4,698,904 + CA264_20385 0.26 -0.4
4,698,904 + CA264_20385 0.26 -0.0
4,698,905 - CA264_20385 0.27 +1.0
4,698,945 + CA264_20385 0.33 -0.1
4,698,945 + CA264_20385 0.33 +0.3
4,698,945 + CA264_20385 0.33 +0.9
4,699,224 + CA264_20385 0.76 +1.0

Or see this region's nucleotide sequence