Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19835

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19830 and CA264_19835 are separated by 2 nucleotidesCA264_19835 and CA264_19840 are separated by 18 nucleotidesCA264_19840 and CA264_19845 are separated by 55 nucleotides CA264_19830: CA264_19830 - hypothetical protein, at 4,575,837 to 4,577,285 _19830 CA264_19835: CA264_19835 - chorismate synthase, at 4,577,288 to 4,578,367 _19835 CA264_19840: CA264_19840 - hypothetical protein, at 4,578,386 to 4,578,619 _19840 CA264_19845: CA264_19845 - hypothetical protein, at 4,578,675 to 4,579,271 _19845 Position (kb) 4577 4578 4579Strain fitness (log2 ratio) -1 0 1 2at 4576.303 kb on + strand, within CA264_19830at 4576.304 kb on - strand, within CA264_19830at 4576.392 kb on + strand, within CA264_19830at 4576.393 kb on - strand, within CA264_19830at 4576.567 kb on - strand, within CA264_19830at 4576.567 kb on - strand, within CA264_19830at 4576.639 kb on - strand, within CA264_19830at 4576.639 kb on - strand, within CA264_19830at 4576.641 kb on - strand, within CA264_19830at 4576.701 kb on + strand, within CA264_19830at 4576.829 kb on + strand, within CA264_19830at 4576.829 kb on + strand, within CA264_19830at 4576.829 kb on + strand, within CA264_19830at 4576.830 kb on - strand, within CA264_19830at 4576.830 kb on - strand, within CA264_19830at 4576.833 kb on + strand, within CA264_19830at 4577.043 kb on + strand, within CA264_19830at 4577.043 kb on + strand, within CA264_19830at 4577.048 kb on + strand, within CA264_19830at 4577.067 kb on + strand, within CA264_19830at 4577.158 kb on - strandat 4577.158 kb on - strandat 4577.284 kb on - strandat 4577.287 kb on + strandat 4578.354 kb on + strandat 4578.355 kb on - strandat 4578.365 kb on + strandat 4578.366 kb on - strandat 4578.391 kb on + strandat 4578.392 kb on - strandat 4578.392 kb on - strandat 4578.439 kb on - strand, within CA264_19840at 4578.542 kb on - strand, within CA264_19840at 4578.601 kb on + strandat 4578.657 kb on + strandat 4578.658 kb on - strandat 4578.677 kb on - strandat 4578.677 kb on - strandat 4578.707 kb on + strandat 4578.707 kb on + strandat 4578.812 kb on - strand, within CA264_19845at 4578.842 kb on + strand, within CA264_19845at 4578.842 kb on + strand, within CA264_19845at 4578.843 kb on - strand, within CA264_19845at 4578.873 kb on - strand, within CA264_19845at 4578.878 kb on + strand, within CA264_19845at 4578.879 kb on - strand, within CA264_19845at 4578.915 kb on + strand, within CA264_19845at 4578.915 kb on + strand, within CA264_19845at 4578.915 kb on + strand, within CA264_19845at 4578.916 kb on - strand, within CA264_19845at 4578.916 kb on - strand, within CA264_19845at 4578.965 kb on + strand, within CA264_19845at 4578.966 kb on - strand, within CA264_19845at 4578.970 kb on + strand, within CA264_19845at 4578.970 kb on + strand, within CA264_19845at 4578.971 kb on - strand, within CA264_19845at 4578.984 kb on + strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.985 kb on - strand, within CA264_19845at 4578.986 kb on + strand, within CA264_19845at 4579.006 kb on + strand, within CA264_19845at 4579.007 kb on - strand, within CA264_19845at 4579.023 kb on + strand, within CA264_19845at 4579.024 kb on - strand, within CA264_19845at 4579.024 kb on - strand, within CA264_19845at 4579.024 kb on - strand, within CA264_19845at 4579.113 kb on + strand, within CA264_19845at 4579.113 kb on + strand, within CA264_19845at 4579.117 kb on + strand, within CA264_19845at 4579.117 kb on + strand, within CA264_19845at 4579.117 kb on + strand, within CA264_19845at 4579.118 kb on - strand, within CA264_19845at 4579.118 kb on - strand, within CA264_19845at 4579.118 kb on - strand, within CA264_19845at 4579.118 kb on - strand, within CA264_19845at 4579.208 kb on + strand, within CA264_19845at 4579.208 kb on + strand, within CA264_19845at 4579.208 kb on + strand, within CA264_19845at 4579.209 kb on - strand, within CA264_19845at 4579.283 kb on - strandat 4579.302 kb on - strandat 4579.304 kb on - strandat 4579.306 kb on - strandat 4579.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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4,576,303 + CA264_19830 0.32 -0.5
4,576,304 - CA264_19830 0.32 -0.4
4,576,392 + CA264_19830 0.38 -1.0
4,576,393 - CA264_19830 0.38 +0.9
4,576,567 - CA264_19830 0.50 +1.4
4,576,567 - CA264_19830 0.50 +0.7
4,576,639 - CA264_19830 0.55 +1.2
4,576,639 - CA264_19830 0.55 +1.1
4,576,641 - CA264_19830 0.55 +0.7
4,576,701 + CA264_19830 0.60 +0.7
4,576,829 + CA264_19830 0.68 +1.1
4,576,829 + CA264_19830 0.68 -0.2
4,576,829 + CA264_19830 0.68 +0.6
4,576,830 - CA264_19830 0.69 +0.1
4,576,830 - CA264_19830 0.69 +1.3
4,576,833 + CA264_19830 0.69 +1.9
4,577,043 + CA264_19830 0.83 +1.9
4,577,043 + CA264_19830 0.83 +0.8
4,577,048 + CA264_19830 0.84 +0.6
4,577,067 + CA264_19830 0.85 +0.7
4,577,158 - +0.6
4,577,158 - +1.2
4,577,284 - +1.9
4,577,287 + -0.2
4,578,354 + +0.5
4,578,355 - +0.0
4,578,365 + +1.0
4,578,366 - -0.8
4,578,391 + +2.7
4,578,392 - -0.4
4,578,392 - +0.9
4,578,439 - CA264_19840 0.23 -0.1
4,578,542 - CA264_19840 0.67 -1.0
4,578,601 + -0.0
4,578,657 + +1.9
4,578,658 - -0.1
4,578,677 - +1.5
4,578,677 - -0.2
4,578,707 + +0.0
4,578,707 + +0.9
4,578,812 - CA264_19845 0.23 +0.6
4,578,842 + CA264_19845 0.28 +1.0
4,578,842 + CA264_19845 0.28 +1.4
4,578,843 - CA264_19845 0.28 +0.1
4,578,873 - CA264_19845 0.33 +0.9
4,578,878 + CA264_19845 0.34 +0.6
4,578,879 - CA264_19845 0.34 +0.2
4,578,915 + CA264_19845 0.40 +0.5
4,578,915 + CA264_19845 0.40 +0.6
4,578,915 + CA264_19845 0.40 +0.4
4,578,916 - CA264_19845 0.40 -0.8
4,578,916 - CA264_19845 0.40 +0.2
4,578,965 + CA264_19845 0.49 +0.7
4,578,966 - CA264_19845 0.49 -0.0
4,578,970 + CA264_19845 0.49 +1.4
4,578,970 + CA264_19845 0.49 +1.5
4,578,971 - CA264_19845 0.50 +0.2
4,578,984 + CA264_19845 0.52 +0.6
4,578,985 - CA264_19845 0.52 -0.1
4,578,985 - CA264_19845 0.52 +0.3
4,578,985 - CA264_19845 0.52 +1.4
4,578,985 - CA264_19845 0.52 -1.2
4,578,985 - CA264_19845 0.52 +0.3
4,578,985 - CA264_19845 0.52 +1.4
4,578,985 - CA264_19845 0.52 +0.5
4,578,985 - CA264_19845 0.52 +0.1
4,578,985 - CA264_19845 0.52 +0.0
4,578,985 - CA264_19845 0.52 -0.1
4,578,985 - CA264_19845 0.52 +0.1
4,578,986 + CA264_19845 0.52 +0.6
4,579,006 + CA264_19845 0.55 +0.6
4,579,007 - CA264_19845 0.56 -0.1
4,579,023 + CA264_19845 0.58 +0.7
4,579,024 - CA264_19845 0.58 +0.2
4,579,024 - CA264_19845 0.58 +0.5
4,579,024 - CA264_19845 0.58 +1.1
4,579,113 + CA264_19845 0.73 +1.7
4,579,113 + CA264_19845 0.73 +0.7
4,579,117 + CA264_19845 0.74 +1.4
4,579,117 + CA264_19845 0.74 +2.1
4,579,117 + CA264_19845 0.74 +1.5
4,579,118 - CA264_19845 0.74 +0.1
4,579,118 - CA264_19845 0.74 -0.1
4,579,118 - CA264_19845 0.74 +0.8
4,579,118 - CA264_19845 0.74 -0.1
4,579,208 + CA264_19845 0.89 +0.8
4,579,208 + CA264_19845 0.89 +0.8
4,579,208 + CA264_19845 0.89 +0.7
4,579,209 - CA264_19845 0.89 +0.4
4,579,283 - +1.3
4,579,302 - +1.9
4,579,304 - +0.4
4,579,306 - +0.9
4,579,306 - +0.9

Or see this region's nucleotide sequence