Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18285 and CA264_18290 are separated by 236 nucleotides CA264_18290 and CA264_18295 are separated by 165 nucleotides
CA264_18285: CA264_18285 - hypothetical protein, at 4,251,063 to 4,252,559
_18285
CA264_18290: CA264_18290 - NADH dehydrogenase subunit D, at 4,252,796 to 4,254,007
_18290
CA264_18295: CA264_18295 - iron-sulfur cluster-binding protein, at 4,254,173 to 4,255,546
_18295
Position (kb)
4252
4253
4254
4255 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4251.798 kb on + strand, within CA264_18285 at 4251.798 kb on + strand, within CA264_18285 at 4251.799 kb on - strand, within CA264_18285 at 4251.819 kb on + strand, within CA264_18285 at 4251.820 kb on - strand, within CA264_18285 at 4251.839 kb on + strand, within CA264_18285 at 4251.855 kb on + strand, within CA264_18285 at 4251.865 kb on - strand, within CA264_18285 at 4251.991 kb on + strand, within CA264_18285 at 4251.992 kb on - strand, within CA264_18285 at 4252.032 kb on - strand, within CA264_18285 at 4252.113 kb on + strand, within CA264_18285 at 4252.148 kb on + strand, within CA264_18285 at 4252.157 kb on - strand, within CA264_18285 at 4252.157 kb on - strand, within CA264_18285 at 4252.157 kb on - strand, within CA264_18285 at 4252.162 kb on - strand, within CA264_18285 at 4252.172 kb on + strand, within CA264_18285 at 4252.194 kb on + strand, within CA264_18285 at 4252.208 kb on + strand, within CA264_18285 at 4252.239 kb on + strand, within CA264_18285 at 4252.273 kb on - strand, within CA264_18285 at 4252.280 kb on - strand, within CA264_18285 at 4252.280 kb on - strand, within CA264_18285 at 4252.289 kb on + strand, within CA264_18285 at 4252.311 kb on - strand, within CA264_18285 at 4252.311 kb on - strand, within CA264_18285 at 4252.343 kb on + strand, within CA264_18285 at 4252.431 kb on + strand at 4252.432 kb on - strand at 4252.442 kb on - strand at 4252.601 kb on - strand at 4252.626 kb on - strand at 4252.660 kb on + strand at 4252.662 kb on + strand at 4252.722 kb on + strand at 4252.772 kb on + strand at 4252.960 kb on - strand, within CA264_18290 at 4253.021 kb on - strand, within CA264_18290 at 4253.049 kb on + strand, within CA264_18290 at 4253.049 kb on + strand, within CA264_18290 at 4253.157 kb on + strand, within CA264_18290 at 4253.157 kb on + strand, within CA264_18290 at 4253.158 kb on - strand, within CA264_18290 at 4253.158 kb on - strand, within CA264_18290 at 4253.158 kb on - strand, within CA264_18290 at 4253.275 kb on + strand, within CA264_18290 at 4253.277 kb on + strand, within CA264_18290 at 4253.319 kb on - strand, within CA264_18290 at 4253.325 kb on - strand, within CA264_18290 at 4253.345 kb on + strand, within CA264_18290 at 4253.349 kb on - strand, within CA264_18290 at 4253.391 kb on + strand, within CA264_18290 at 4253.396 kb on + strand, within CA264_18290 at 4253.396 kb on + strand, within CA264_18290 at 4253.448 kb on + strand, within CA264_18290 at 4253.453 kb on - strand, within CA264_18290 at 4253.505 kb on - strand, within CA264_18290 at 4253.541 kb on + strand, within CA264_18290 at 4253.542 kb on - strand, within CA264_18290 at 4253.654 kb on + strand, within CA264_18290 at 4253.655 kb on - strand, within CA264_18290 at 4253.905 kb on - strand at 4253.942 kb on - strand at 4254.005 kb on + strand at 4254.005 kb on + strand at 4254.060 kb on + strand at 4254.061 kb on - strand at 4254.096 kb on + strand at 4254.096 kb on + strand at 4254.096 kb on + strand at 4254.113 kb on + strand at 4254.153 kb on + strand at 4254.299 kb on + strand at 4254.300 kb on - strand at 4254.300 kb on - strand at 4254.301 kb on + strand at 4254.301 kb on + strand at 4254.301 kb on + strand at 4254.302 kb on - strand at 4254.448 kb on + strand, within CA264_18295 at 4254.507 kb on + strand, within CA264_18295 at 4254.507 kb on + strand, within CA264_18295 at 4254.544 kb on - strand, within CA264_18295 at 4254.555 kb on + strand, within CA264_18295 at 4254.556 kb on - strand, within CA264_18295 at 4254.560 kb on - strand, within CA264_18295 at 4254.580 kb on - strand, within CA264_18295 at 4254.680 kb on + strand, within CA264_18295 at 4254.681 kb on - strand, within CA264_18295 at 4254.687 kb on + strand, within CA264_18295 at 4254.756 kb on - strand, within CA264_18295 at 4254.868 kb on + strand, within CA264_18295 at 4254.869 kb on - strand, within CA264_18295 at 4254.970 kb on - strand, within CA264_18295
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 4,251,798 + CA264_18285 0.49 -0.1 4,251,798 + CA264_18285 0.49 +0.3 4,251,799 - CA264_18285 0.49 +0.3 4,251,819 + CA264_18285 0.51 -0.4 4,251,820 - CA264_18285 0.51 +0.4 4,251,839 + CA264_18285 0.52 -0.2 4,251,855 + CA264_18285 0.53 -1.4 4,251,865 - CA264_18285 0.54 +1.2 4,251,991 + CA264_18285 0.62 +0.4 4,251,992 - CA264_18285 0.62 -0.7 4,252,032 - CA264_18285 0.65 +1.3 4,252,113 + CA264_18285 0.70 -0.9 4,252,148 + CA264_18285 0.72 -0.6 4,252,157 - CA264_18285 0.73 -0.8 4,252,157 - CA264_18285 0.73 +1.5 4,252,157 - CA264_18285 0.73 -0.4 4,252,162 - CA264_18285 0.73 +0.3 4,252,172 + CA264_18285 0.74 +0.2 4,252,194 + CA264_18285 0.76 -0.3 4,252,208 + CA264_18285 0.76 -0.4 4,252,239 + CA264_18285 0.79 +0.9 4,252,273 - CA264_18285 0.81 -0.5 4,252,280 - CA264_18285 0.81 +0.4 4,252,280 - CA264_18285 0.81 -0.4 4,252,289 + CA264_18285 0.82 +0.6 4,252,311 - CA264_18285 0.83 -0.3 4,252,311 - CA264_18285 0.83 -0.6 4,252,343 + CA264_18285 0.86 +0.0 4,252,431 + +0.3 4,252,432 - -0.3 4,252,442 - -0.3 4,252,601 - -1.1 4,252,626 - -4.7 4,252,660 + +1.7 4,252,662 + +0.1 4,252,722 + +0.4 4,252,772 + -0.2 4,252,960 - CA264_18290 0.14 -1.7 4,253,021 - CA264_18290 0.19 -0.6 4,253,049 + CA264_18290 0.21 -0.1 4,253,049 + CA264_18290 0.21 -1.5 4,253,157 + CA264_18290 0.30 -1.1 4,253,157 + CA264_18290 0.30 -2.7 4,253,158 - CA264_18290 0.30 -1.7 4,253,158 - CA264_18290 0.30 -0.7 4,253,158 - CA264_18290 0.30 -0.6 4,253,275 + CA264_18290 0.40 -1.9 4,253,277 + CA264_18290 0.40 -2.3 4,253,319 - CA264_18290 0.43 -0.7 4,253,325 - CA264_18290 0.44 -1.4 4,253,345 + CA264_18290 0.45 +0.1 4,253,349 - CA264_18290 0.46 -0.8 4,253,391 + CA264_18290 0.49 -0.4 4,253,396 + CA264_18290 0.50 -0.9 4,253,396 + CA264_18290 0.50 -2.2 4,253,448 + CA264_18290 0.54 -1.1 4,253,453 - CA264_18290 0.54 -1.1 4,253,505 - CA264_18290 0.58 -0.6 4,253,541 + CA264_18290 0.61 -0.7 4,253,542 - CA264_18290 0.62 +0.4 4,253,654 + CA264_18290 0.71 -0.5 4,253,655 - CA264_18290 0.71 -1.0 4,253,905 - -1.7 4,253,942 - -1.7 4,254,005 + +0.5 4,254,005 + -0.2 4,254,060 + -0.9 4,254,061 - -0.8 4,254,096 + +0.0 4,254,096 + -0.0 4,254,096 + -0.2 4,254,113 + +1.5 4,254,153 + +1.2 4,254,299 + +0.4 4,254,300 - +1.0 4,254,300 - -1.1 4,254,301 + +0.7 4,254,301 + -0.0 4,254,301 + +0.6 4,254,302 - +1.1 4,254,448 + CA264_18295 0.20 +0.9 4,254,507 + CA264_18295 0.24 -0.5 4,254,507 + CA264_18295 0.24 +0.6 4,254,544 - CA264_18295 0.27 +0.1 4,254,555 + CA264_18295 0.28 +0.0 4,254,556 - CA264_18295 0.28 +0.2 4,254,560 - CA264_18295 0.28 +1.2 4,254,580 - CA264_18295 0.30 +0.1 4,254,680 + CA264_18295 0.37 +0.1 4,254,681 - CA264_18295 0.37 -0.7 4,254,687 + CA264_18295 0.37 +0.7 4,254,756 - CA264_18295 0.42 +0.4 4,254,868 + CA264_18295 0.51 +0.7 4,254,869 - CA264_18295 0.51 +0.9 4,254,970 - CA264_18295 0.58 +0.9
Or see this region's nucleotide sequence