Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17755 and CA264_17760 are separated by 152 nucleotides CA264_17760 and CA264_17765 are separated by 194 nucleotides
CA264_17755: CA264_17755 - ABC transporter, at 4,130,407 to 4,132,191
_17755
CA264_17760: CA264_17760 - leucine dehydrogenase, at 4,132,344 to 4,133,444
_17760
CA264_17765: CA264_17765 - transcription antitermination factor NusB, at 4,133,639 to 4,134,811
_17765
Position (kb)
4132
4133
4134 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4131.455 kb on + strand, within CA264_17755 at 4131.455 kb on + strand, within CA264_17755 at 4131.514 kb on + strand, within CA264_17755 at 4131.515 kb on - strand, within CA264_17755 at 4131.515 kb on - strand, within CA264_17755 at 4131.515 kb on - strand, within CA264_17755 at 4131.614 kb on + strand, within CA264_17755 at 4131.618 kb on - strand, within CA264_17755 at 4131.676 kb on - strand, within CA264_17755 at 4131.676 kb on - strand, within CA264_17755 at 4131.690 kb on - strand, within CA264_17755 at 4131.690 kb on - strand, within CA264_17755 at 4131.690 kb on - strand, within CA264_17755 at 4131.736 kb on - strand, within CA264_17755 at 4131.818 kb on + strand, within CA264_17755 at 4131.842 kb on + strand, within CA264_17755 at 4131.851 kb on + strand, within CA264_17755 at 4131.852 kb on - strand, within CA264_17755 at 4131.852 kb on - strand, within CA264_17755 at 4131.853 kb on + strand, within CA264_17755 at 4131.854 kb on - strand, within CA264_17755 at 4131.996 kb on - strand, within CA264_17755 at 4131.996 kb on - strand, within CA264_17755 at 4131.996 kb on - strand, within CA264_17755 at 4132.044 kb on + strand at 4132.045 kb on - strand at 4132.045 kb on - strand at 4132.045 kb on - strand at 4132.113 kb on + strand at 4132.114 kb on - strand at 4132.143 kb on + strand at 4132.146 kb on - strand at 4132.146 kb on - strand at 4132.146 kb on - strand at 4132.152 kb on - strand at 4132.160 kb on - strand at 4132.164 kb on - strand at 4132.317 kb on + strand at 4132.341 kb on + strand at 4132.342 kb on - strand at 4132.511 kb on + strand, within CA264_17760 at 4132.512 kb on - strand, within CA264_17760 at 4132.579 kb on - strand, within CA264_17760 at 4132.707 kb on + strand, within CA264_17760 at 4132.708 kb on - strand, within CA264_17760 at 4132.708 kb on - strand, within CA264_17760 at 4132.777 kb on + strand, within CA264_17760 at 4132.833 kb on + strand, within CA264_17760 at 4132.838 kb on + strand, within CA264_17760 at 4132.838 kb on + strand, within CA264_17760 at 4132.838 kb on + strand, within CA264_17760 at 4132.843 kb on - strand, within CA264_17760 at 4132.843 kb on - strand, within CA264_17760 at 4132.843 kb on - strand, within CA264_17760 at 4132.988 kb on + strand, within CA264_17760 at 4133.025 kb on + strand, within CA264_17760 at 4133.058 kb on + strand, within CA264_17760 at 4133.075 kb on + strand, within CA264_17760 at 4133.076 kb on - strand, within CA264_17760 at 4133.076 kb on - strand, within CA264_17760 at 4133.076 kb on - strand, within CA264_17760 at 4133.076 kb on - strand, within CA264_17760 at 4133.079 kb on + strand, within CA264_17760 at 4133.080 kb on - strand, within CA264_17760 at 4133.204 kb on - strand, within CA264_17760 at 4133.220 kb on + strand, within CA264_17760 at 4133.266 kb on - strand, within CA264_17760 at 4133.318 kb on + strand, within CA264_17760 at 4133.318 kb on + strand, within CA264_17760 at 4133.323 kb on - strand, within CA264_17760 at 4133.340 kb on - strand at 4133.439 kb on + strand at 4133.442 kb on + strand at 4133.459 kb on + strand at 4133.459 kb on + strand at 4133.460 kb on - strand at 4133.460 kb on - strand at 4133.512 kb on + strand at 4133.513 kb on - strand at 4133.516 kb on + strand at 4133.516 kb on + strand at 4133.516 kb on + strand at 4133.517 kb on - strand at 4133.517 kb on - strand at 4133.536 kb on - strand at 4133.536 kb on - strand at 4133.536 kb on - strand at 4133.536 kb on - strand at 4133.536 kb on - strand at 4133.538 kb on - strand at 4133.547 kb on - strand at 4133.557 kb on + strand at 4133.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 4,131,455 + CA264_17755 0.59 +0.0 4,131,455 + CA264_17755 0.59 -0.6 4,131,514 + CA264_17755 0.62 -1.6 4,131,515 - CA264_17755 0.62 -0.9 4,131,515 - CA264_17755 0.62 -2.3 4,131,515 - CA264_17755 0.62 -0.7 4,131,614 + CA264_17755 0.68 -1.2 4,131,618 - CA264_17755 0.68 -2.8 4,131,676 - CA264_17755 0.71 -1.2 4,131,676 - CA264_17755 0.71 -1.0 4,131,690 - CA264_17755 0.72 -0.4 4,131,690 - CA264_17755 0.72 -0.3 4,131,690 - CA264_17755 0.72 -0.6 4,131,736 - CA264_17755 0.74 -1.3 4,131,818 + CA264_17755 0.79 -0.5 4,131,842 + CA264_17755 0.80 -1.7 4,131,851 + CA264_17755 0.81 -1.7 4,131,852 - CA264_17755 0.81 -0.9 4,131,852 - CA264_17755 0.81 +0.0 4,131,853 + CA264_17755 0.81 -1.0 4,131,854 - CA264_17755 0.81 -0.4 4,131,996 - CA264_17755 0.89 -1.5 4,131,996 - CA264_17755 0.89 -0.9 4,131,996 - CA264_17755 0.89 -1.6 4,132,044 + +0.1 4,132,045 - -1.5 4,132,045 - -1.6 4,132,045 - +0.2 4,132,113 + -2.5 4,132,114 - -1.0 4,132,143 + +0.0 4,132,146 - -1.4 4,132,146 - -0.7 4,132,146 - -1.7 4,132,152 - -1.3 4,132,160 - -0.6 4,132,164 - -0.2 4,132,317 + -0.1 4,132,341 + +0.4 4,132,342 - -1.6 4,132,511 + CA264_17760 0.15 +0.5 4,132,512 - CA264_17760 0.15 -0.0 4,132,579 - CA264_17760 0.21 +0.6 4,132,707 + CA264_17760 0.33 +1.6 4,132,708 - CA264_17760 0.33 +1.0 4,132,708 - CA264_17760 0.33 +0.2 4,132,777 + CA264_17760 0.39 -0.4 4,132,833 + CA264_17760 0.44 +2.0 4,132,838 + CA264_17760 0.45 +0.3 4,132,838 + CA264_17760 0.45 +1.1 4,132,838 + CA264_17760 0.45 +0.3 4,132,843 - CA264_17760 0.45 +0.7 4,132,843 - CA264_17760 0.45 +0.4 4,132,843 - CA264_17760 0.45 +0.6 4,132,988 + CA264_17760 0.58 +1.2 4,133,025 + CA264_17760 0.62 +0.6 4,133,058 + CA264_17760 0.65 +0.8 4,133,075 + CA264_17760 0.66 +0.8 4,133,076 - CA264_17760 0.66 +1.3 4,133,076 - CA264_17760 0.66 +1.0 4,133,076 - CA264_17760 0.66 +0.5 4,133,076 - CA264_17760 0.66 +0.5 4,133,079 + CA264_17760 0.67 +1.4 4,133,080 - CA264_17760 0.67 +1.2 4,133,204 - CA264_17760 0.78 +0.5 4,133,220 + CA264_17760 0.80 +1.0 4,133,266 - CA264_17760 0.84 +1.1 4,133,318 + CA264_17760 0.88 +0.7 4,133,318 + CA264_17760 0.88 +1.1 4,133,323 - CA264_17760 0.89 +0.9 4,133,340 - +0.7 4,133,439 + +0.6 4,133,442 + +1.3 4,133,459 + +1.3 4,133,459 + +0.7 4,133,460 - +0.7 4,133,460 - +1.5 4,133,512 + -0.0 4,133,513 - -0.1 4,133,516 + -0.2 4,133,516 + +1.6 4,133,516 + +0.2 4,133,517 - +1.3 4,133,517 - -0.2 4,133,536 - +0.5 4,133,536 - +0.8 4,133,536 - -0.4 4,133,536 - +1.0 4,133,536 - +0.8 4,133,538 - +1.2 4,133,547 - +0.7 4,133,557 + +1.0 4,133,627 + +0.0
Or see this region's nucleotide sequence