Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15340

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15335 and CA264_15340 are separated by 106 nucleotidesCA264_15340 and CA264_15345 are separated by 880 nucleotides CA264_15335: CA264_15335 - SusC/RagA family TonB-linked outer membrane protein, at 3,589,799 to 3,593,053 _15335 CA264_15340: CA264_15340 - hypothetical protein, at 3,593,160 to 3,593,351 _15340 CA264_15345: CA264_15345 - ferrous iron transporter B, at 3,594,232 to 3,596,385 _15345 Position (kb) 3593 3594Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3592.186 kb on - strand, within CA264_15335at 3592.189 kb on + strand, within CA264_15335at 3592.190 kb on - strand, within CA264_15335at 3592.213 kb on - strand, within CA264_15335at 3592.213 kb on - strand, within CA264_15335at 3592.228 kb on + strand, within CA264_15335at 3592.228 kb on + strand, within CA264_15335at 3592.229 kb on - strand, within CA264_15335at 3592.229 kb on - strand, within CA264_15335at 3592.229 kb on - strand, within CA264_15335at 3592.232 kb on - strand, within CA264_15335at 3592.233 kb on + strand, within CA264_15335at 3592.234 kb on - strand, within CA264_15335at 3592.234 kb on - strand, within CA264_15335at 3592.280 kb on + strand, within CA264_15335at 3592.280 kb on + strand, within CA264_15335at 3592.280 kb on + strand, within CA264_15335at 3592.286 kb on + strand, within CA264_15335at 3592.289 kb on - strand, within CA264_15335at 3592.363 kb on + strand, within CA264_15335at 3592.363 kb on + strand, within CA264_15335at 3592.363 kb on + strand, within CA264_15335at 3592.454 kb on + strand, within CA264_15335at 3592.455 kb on - strand, within CA264_15335at 3592.456 kb on + strand, within CA264_15335at 3592.456 kb on + strand, within CA264_15335at 3592.480 kb on + strand, within CA264_15335at 3592.481 kb on - strand, within CA264_15335at 3592.505 kb on + strand, within CA264_15335at 3592.565 kb on - strand, within CA264_15335at 3592.567 kb on + strand, within CA264_15335at 3592.567 kb on + strand, within CA264_15335at 3592.568 kb on - strand, within CA264_15335at 3592.568 kb on - strand, within CA264_15335at 3592.675 kb on + strand, within CA264_15335at 3592.675 kb on + strand, within CA264_15335at 3592.681 kb on + strand, within CA264_15335at 3592.682 kb on - strand, within CA264_15335at 3592.730 kb on + strandat 3592.731 kb on - strandat 3592.760 kb on + strandat 3592.778 kb on + strandat 3592.778 kb on + strandat 3592.823 kb on + strandat 3592.824 kb on - strandat 3592.824 kb on - strandat 3592.835 kb on + strandat 3592.873 kb on - strandat 3592.901 kb on + strandat 3592.902 kb on - strandat 3592.917 kb on - strandat 3592.961 kb on + strandat 3592.961 kb on + strandat 3592.962 kb on - strandat 3592.965 kb on - strandat 3592.975 kb on + strandat 3593.039 kb on + strandat 3593.067 kb on + strandat 3593.081 kb on - strandat 3593.081 kb on - strandat 3593.103 kb on + strandat 3593.103 kb on + strandat 3593.103 kb on + strandat 3593.104 kb on - strandat 3593.110 kb on + strandat 3593.111 kb on - strandat 3593.112 kb on + strandat 3593.115 kb on + strandat 3593.115 kb on + strandat 3593.117 kb on + strandat 3593.117 kb on + strandat 3593.146 kb on + strandat 3593.146 kb on + strandat 3593.146 kb on + strandat 3593.146 kb on + strandat 3593.147 kb on - strandat 3593.147 kb on - strandat 3593.159 kb on + strandat 3593.159 kb on + strandat 3593.159 kb on + strandat 3593.159 kb on + strandat 3593.177 kb on + strandat 3593.231 kb on + strand, within CA264_15340at 3593.231 kb on + strand, within CA264_15340at 3593.232 kb on - strand, within CA264_15340at 3593.240 kb on - strand, within CA264_15340at 3593.301 kb on - strand, within CA264_15340at 3593.301 kb on - strand, within CA264_15340at 3593.304 kb on + strand, within CA264_15340at 3593.333 kb on - strandat 3593.390 kb on + strandat 3593.394 kb on + strandat 3593.434 kb on + strandat 3593.445 kb on + strandat 3593.461 kb on + strandat 3593.475 kb on + strandat 3593.483 kb on + strandat 3593.495 kb on + strandat 3593.497 kb on + strandat 3593.559 kb on + strandat 3593.645 kb on - strandat 3593.652 kb on - strandat 3593.737 kb on + strandat 3593.737 kb on + strandat 3593.737 kb on + strandat 3593.738 kb on - strandat 3593.902 kb on + strandat 3593.902 kb on + strandat 3593.902 kb on + strandat 3593.902 kb on + strandat 3593.933 kb on + strandat 3593.991 kb on + strandat 3593.992 kb on - strandat 3594.023 kb on - strandat 3594.023 kb on - strandat 3594.047 kb on - strandat 3594.075 kb on + strandat 3594.075 kb on + strandat 3594.075 kb on + strandat 3594.145 kb on + strandat 3594.145 kb on + strandat 3594.198 kb on + strandat 3594.199 kb on - strandat 3594.224 kb on - strandat 3594.237 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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3,592,186 - CA264_15335 0.73 +0.0
3,592,189 + CA264_15335 0.73 -0.0
3,592,190 - CA264_15335 0.73 +1.3
3,592,213 - CA264_15335 0.74 +1.1
3,592,213 - CA264_15335 0.74 +0.3
3,592,228 + CA264_15335 0.75 -1.7
3,592,228 + CA264_15335 0.75 -0.6
3,592,229 - CA264_15335 0.75 +0.6
3,592,229 - CA264_15335 0.75 +0.1
3,592,229 - CA264_15335 0.75 +0.3
3,592,232 - CA264_15335 0.75 +0.3
3,592,233 + CA264_15335 0.75 -1.3
3,592,234 - CA264_15335 0.75 -0.4
3,592,234 - CA264_15335 0.75 +0.4
3,592,280 + CA264_15335 0.76 -0.4
3,592,280 + CA264_15335 0.76 +0.8
3,592,280 + CA264_15335 0.76 +1.5
3,592,286 + CA264_15335 0.76 -0.0
3,592,289 - CA264_15335 0.76 +0.8
3,592,363 + CA264_15335 0.79 -0.6
3,592,363 + CA264_15335 0.79 -1.0
3,592,363 + CA264_15335 0.79 -1.5
3,592,454 + CA264_15335 0.82 -0.0
3,592,455 - CA264_15335 0.82 -0.9
3,592,456 + CA264_15335 0.82 -1.0
3,592,456 + CA264_15335 0.82 -1.0
3,592,480 + CA264_15335 0.82 -0.8
3,592,481 - CA264_15335 0.82 -0.9
3,592,505 + CA264_15335 0.83 +0.1
3,592,565 - CA264_15335 0.85 +0.7
3,592,567 + CA264_15335 0.85 +0.5
3,592,567 + CA264_15335 0.85 -0.7
3,592,568 - CA264_15335 0.85 -0.4
3,592,568 - CA264_15335 0.85 -0.4
3,592,675 + CA264_15335 0.88 -0.6
3,592,675 + CA264_15335 0.88 -1.7
3,592,681 + CA264_15335 0.89 +0.2
3,592,682 - CA264_15335 0.89 +1.2
3,592,730 + -2.0
3,592,731 - +1.0
3,592,760 + -0.3
3,592,778 + -0.7
3,592,778 + -0.6
3,592,823 + -0.2
3,592,824 - +0.1
3,592,824 - -0.8
3,592,835 + -0.9
3,592,873 - -1.8
3,592,901 + -0.2
3,592,902 - -0.5
3,592,917 - -0.4
3,592,961 + -0.2
3,592,961 + +0.0
3,592,962 - -0.6
3,592,965 - -1.1
3,592,975 + -1.9
3,593,039 + -0.2
3,593,067 + -1.2
3,593,081 - +1.3
3,593,081 - +2.5
3,593,103 + +0.2
3,593,103 + +0.2
3,593,103 + +2.0
3,593,104 - +2.0
3,593,110 + +0.7
3,593,111 - +1.8
3,593,112 + +0.3
3,593,115 + +1.0
3,593,115 + +0.3
3,593,117 + +0.8
3,593,117 + +0.6
3,593,146 + +1.0
3,593,146 + +0.2
3,593,146 + -0.2
3,593,146 + +0.7
3,593,147 - +2.2
3,593,147 - +4.1
3,593,159 + +0.3
3,593,159 + +0.7
3,593,159 + +0.2
3,593,159 + -0.9
3,593,177 + -2.5
3,593,231 + CA264_15340 0.37 -0.0
3,593,231 + CA264_15340 0.37 +0.3
3,593,232 - CA264_15340 0.38 +0.9
3,593,240 - CA264_15340 0.42 -0.9
3,593,301 - CA264_15340 0.73 +1.3
3,593,301 - CA264_15340 0.73 +1.8
3,593,304 + CA264_15340 0.75 -0.0
3,593,333 - +0.8
3,593,390 + -1.8
3,593,394 + -1.5
3,593,434 + -0.8
3,593,445 + +0.4
3,593,461 + -0.3
3,593,475 + -0.4
3,593,483 + +0.2
3,593,495 + -0.2
3,593,497 + +0.0
3,593,559 + +1.0
3,593,645 - +1.5
3,593,652 - +1.4
3,593,737 + -0.3
3,593,737 + -0.6
3,593,737 + -0.1
3,593,738 - +2.3
3,593,902 + +0.0
3,593,902 + +0.0
3,593,902 + -0.1
3,593,902 + +0.4
3,593,933 + +0.1
3,593,991 + -0.2
3,593,992 - +0.7
3,594,023 - +1.7
3,594,023 - +1.1
3,594,047 - +0.9
3,594,075 + +0.5
3,594,075 + -0.1
3,594,075 + +0.3
3,594,145 + -0.0
3,594,145 + -0.1
3,594,198 + +0.3
3,594,199 - +0.5
3,594,224 - -1.4
3,594,237 + +0.4

Or see this region's nucleotide sequence