Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13920

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13915 and CA264_13920 are separated by 608 nucleotidesCA264_13920 and CA264_13925 are separated by 122 nucleotides CA264_13915: CA264_13915 - PAS domain-containing sensor histidine kinase, at 3,247,039 to 3,248,583 _13915 CA264_13920: CA264_13920 - PutA protein, at 3,249,192 to 3,250,274 _13920 CA264_13925: CA264_13925 - cytochrome c oxidase subunit I, at 3,250,397 to 3,252,217 _13925 Position (kb) 3249 3250 3251Strain fitness (log2 ratio) -2 -1 0 1 2at 3248.252 kb on - strand, within CA264_13915at 3248.320 kb on - strand, within CA264_13915at 3248.345 kb on + strand, within CA264_13915at 3248.345 kb on + strand, within CA264_13915at 3248.485 kb on + strandat 3248.485 kb on - strandat 3248.493 kb on + strandat 3248.493 kb on + strandat 3248.496 kb on + strandat 3248.519 kb on - strandat 3248.589 kb on - strandat 3248.605 kb on + strandat 3248.606 kb on - strandat 3248.606 kb on - strandat 3248.738 kb on + strandat 3248.802 kb on - strandat 3248.841 kb on - strandat 3248.929 kb on - strandat 3249.019 kb on + strandat 3249.034 kb on + strandat 3249.061 kb on + strandat 3249.062 kb on - strandat 3249.062 kb on - strandat 3249.062 kb on - strandat 3249.062 kb on - strandat 3249.062 kb on - strandat 3249.062 kb on - strandat 3249.069 kb on - strandat 3249.074 kb on + strandat 3249.074 kb on + strandat 3249.382 kb on - strand, within CA264_13920at 3249.481 kb on - strand, within CA264_13920at 3249.481 kb on - strand, within CA264_13920at 3249.496 kb on + strand, within CA264_13920at 3249.637 kb on + strand, within CA264_13920at 3249.640 kb on - strand, within CA264_13920at 3249.640 kb on - strand, within CA264_13920at 3249.708 kb on + strand, within CA264_13920at 3249.771 kb on + strand, within CA264_13920at 3249.844 kb on - strand, within CA264_13920at 3249.970 kb on + strand, within CA264_13920at 3250.011 kb on + strand, within CA264_13920at 3250.133 kb on - strand, within CA264_13920at 3250.140 kb on + strand, within CA264_13920at 3250.184 kb on - strandat 3250.256 kb on - strandat 3250.272 kb on + strandat 3250.381 kb on - strandat 3250.399 kb on - strandat 3250.467 kb on + strandat 3250.494 kb on + strandat 3250.495 kb on - strandat 3250.500 kb on + strandat 3250.524 kb on - strandat 3250.629 kb on + strand, within CA264_13925at 3250.634 kb on - strand, within CA264_13925at 3250.634 kb on - strand, within CA264_13925at 3250.651 kb on + strand, within CA264_13925at 3250.651 kb on + strand, within CA264_13925at 3250.688 kb on + strand, within CA264_13925at 3250.689 kb on - strand, within CA264_13925at 3250.715 kb on - strand, within CA264_13925at 3250.743 kb on + strand, within CA264_13925at 3250.746 kb on + strand, within CA264_13925at 3250.747 kb on - strand, within CA264_13925at 3250.776 kb on + strand, within CA264_13925at 3250.800 kb on + strand, within CA264_13925at 3250.833 kb on + strand, within CA264_13925at 3250.834 kb on - strand, within CA264_13925at 3250.885 kb on - strand, within CA264_13925at 3250.953 kb on + strand, within CA264_13925at 3250.953 kb on + strand, within CA264_13925at 3250.953 kb on + strand, within CA264_13925at 3251.021 kb on - strand, within CA264_13925at 3251.040 kb on - strand, within CA264_13925at 3251.102 kb on - strand, within CA264_13925at 3251.131 kb on + strand, within CA264_13925at 3251.131 kb on + strand, within CA264_13925at 3251.131 kb on + strand, within CA264_13925at 3251.205 kb on - strand, within CA264_13925at 3251.236 kb on + strand, within CA264_13925

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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3,248,252 - CA264_13915 0.79 +0.7
3,248,320 - CA264_13915 0.83 -0.5
3,248,345 + CA264_13915 0.85 -0.3
3,248,345 + CA264_13915 0.85 +0.4
3,248,485 + -0.5
3,248,485 - +0.2
3,248,493 + +0.6
3,248,493 + -1.6
3,248,496 + +0.1
3,248,519 - -0.4
3,248,589 - +0.1
3,248,605 + -1.2
3,248,606 - -1.0
3,248,606 - -0.4
3,248,738 + -1.2
3,248,802 - -0.3
3,248,841 - -0.3
3,248,929 - +0.0
3,249,019 + -0.3
3,249,034 + +0.9
3,249,061 + -0.4
3,249,062 - -0.1
3,249,062 - -0.5
3,249,062 - -0.2
3,249,062 - -0.0
3,249,062 - -1.1
3,249,062 - -0.9
3,249,069 - -0.1
3,249,074 + -0.0
3,249,074 + -0.7
3,249,382 - CA264_13920 0.18 -0.2
3,249,481 - CA264_13920 0.27 -0.7
3,249,481 - CA264_13920 0.27 -0.3
3,249,496 + CA264_13920 0.28 -0.5
3,249,637 + CA264_13920 0.41 -0.1
3,249,640 - CA264_13920 0.41 +0.5
3,249,640 - CA264_13920 0.41 +1.3
3,249,708 + CA264_13920 0.48 -0.5
3,249,771 + CA264_13920 0.53 -0.2
3,249,844 - CA264_13920 0.60 -0.5
3,249,970 + CA264_13920 0.72 -0.9
3,250,011 + CA264_13920 0.76 +0.5
3,250,133 - CA264_13920 0.87 +0.0
3,250,140 + CA264_13920 0.88 -0.1
3,250,184 - -0.0
3,250,256 - -0.5
3,250,272 + -0.0
3,250,381 - +0.1
3,250,399 - -0.3
3,250,467 + -0.4
3,250,494 + +1.7
3,250,495 - +1.0
3,250,500 + -0.8
3,250,524 - -0.4
3,250,629 + CA264_13925 0.13 +0.0
3,250,634 - CA264_13925 0.13 +0.4
3,250,634 - CA264_13925 0.13 -1.0
3,250,651 + CA264_13925 0.14 -2.3
3,250,651 + CA264_13925 0.14 +0.2
3,250,688 + CA264_13925 0.16 -0.2
3,250,689 - CA264_13925 0.16 -1.2
3,250,715 - CA264_13925 0.17 -0.0
3,250,743 + CA264_13925 0.19 +0.7
3,250,746 + CA264_13925 0.19 -0.8
3,250,747 - CA264_13925 0.19 +0.4
3,250,776 + CA264_13925 0.21 -1.6
3,250,800 + CA264_13925 0.22 +2.1
3,250,833 + CA264_13925 0.24 -0.5
3,250,834 - CA264_13925 0.24 -0.2
3,250,885 - CA264_13925 0.27 -0.2
3,250,953 + CA264_13925 0.31 -0.7
3,250,953 + CA264_13925 0.31 -0.1
3,250,953 + CA264_13925 0.31 +0.1
3,251,021 - CA264_13925 0.34 -0.5
3,251,040 - CA264_13925 0.35 -0.3
3,251,102 - CA264_13925 0.39 -1.3
3,251,131 + CA264_13925 0.40 -0.5
3,251,131 + CA264_13925 0.40 -0.1
3,251,131 + CA264_13925 0.40 -0.5
3,251,205 - CA264_13925 0.44 -0.1
3,251,236 + CA264_13925 0.46 -0.6

Or see this region's nucleotide sequence