Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13660

Experiment: m.b. Cephalothin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_13655 and CA264_13660 are separated by 243 nucleotidesCA264_13660 and CA264_13665 are separated by 269 nucleotides CA264_13655: CA264_13655 - DNA metabolism protein, at 3,191,942 to 3,192,718 _13655 CA264_13660: CA264_13660 - putative DNA modification/repair radical SAM protein, at 3,192,962 to 3,194,227 _13660 CA264_13665: CA264_13665 - hypothetical protein, at 3,194,497 to 3,196,371 _13665 Position (kb) 3192 3193 3194 3195Strain fitness (log2 ratio) -3 -2 -1 0 1at 3191.976 kb on + strandat 3192.037 kb on + strand, within CA264_13655at 3192.038 kb on - strand, within CA264_13655at 3192.080 kb on - strand, within CA264_13655at 3192.158 kb on + strand, within CA264_13655at 3192.168 kb on - strand, within CA264_13655at 3192.175 kb on - strand, within CA264_13655at 3192.204 kb on + strand, within CA264_13655at 3192.402 kb on + strand, within CA264_13655at 3192.403 kb on - strand, within CA264_13655at 3192.415 kb on + strand, within CA264_13655at 3192.416 kb on - strand, within CA264_13655at 3192.443 kb on + strand, within CA264_13655at 3192.444 kb on - strand, within CA264_13655at 3192.444 kb on - strand, within CA264_13655at 3192.448 kb on - strand, within CA264_13655at 3192.448 kb on - strand, within CA264_13655at 3192.489 kb on + strand, within CA264_13655at 3192.490 kb on - strand, within CA264_13655at 3192.493 kb on + strand, within CA264_13655at 3192.493 kb on + strand, within CA264_13655at 3192.493 kb on + strand, within CA264_13655at 3192.494 kb on - strand, within CA264_13655at 3192.494 kb on - strand, within CA264_13655at 3192.494 kb on - strand, within CA264_13655at 3192.494 kb on - strand, within CA264_13655at 3192.495 kb on + strand, within CA264_13655at 3192.495 kb on + strand, within CA264_13655at 3192.495 kb on + strand, within CA264_13655at 3192.498 kb on + strand, within CA264_13655at 3192.499 kb on - strand, within CA264_13655at 3192.499 kb on - strand, within CA264_13655at 3192.601 kb on + strand, within CA264_13655at 3192.601 kb on + strand, within CA264_13655at 3192.602 kb on - strand, within CA264_13655at 3192.602 kb on - strand, within CA264_13655at 3192.657 kb on + strandat 3192.708 kb on + strandat 3192.708 kb on + strandat 3192.735 kb on + strandat 3192.881 kb on - strandat 3192.901 kb on + strandat 3192.903 kb on + strandat 3192.903 kb on + strandat 3192.904 kb on - strandat 3193.359 kb on + strand, within CA264_13660at 3193.600 kb on + strand, within CA264_13660at 3193.672 kb on + strand, within CA264_13660at 3193.822 kb on + strand, within CA264_13660at 3193.822 kb on + strand, within CA264_13660at 3193.822 kb on + strand, within CA264_13660at 3193.870 kb on + strand, within CA264_13660at 3193.872 kb on + strand, within CA264_13660at 3194.013 kb on + strand, within CA264_13660at 3194.013 kb on + strand, within CA264_13660at 3194.218 kb on + strandat 3194.257 kb on + strandat 3194.452 kb on + strandat 3194.496 kb on + strandat 3194.496 kb on + strandat 3194.734 kb on + strand, within CA264_13665at 3195.141 kb on + strand, within CA264_13665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
remove
3,191,976 + -0.3
3,192,037 + CA264_13655 0.12 -0.3
3,192,038 - CA264_13655 0.12 -0.3
3,192,080 - CA264_13655 0.18 -0.0
3,192,158 + CA264_13655 0.28 -1.0
3,192,168 - CA264_13655 0.29 +1.5
3,192,175 - CA264_13655 0.30 +0.1
3,192,204 + CA264_13655 0.34 -0.4
3,192,402 + CA264_13655 0.59 -0.1
3,192,403 - CA264_13655 0.59 +0.1
3,192,415 + CA264_13655 0.61 -0.8
3,192,416 - CA264_13655 0.61 -1.4
3,192,443 + CA264_13655 0.64 -1.5
3,192,444 - CA264_13655 0.65 -0.2
3,192,444 - CA264_13655 0.65 -1.1
3,192,448 - CA264_13655 0.65 -0.3
3,192,448 - CA264_13655 0.65 -1.0
3,192,489 + CA264_13655 0.70 +0.1
3,192,490 - CA264_13655 0.71 +0.1
3,192,493 + CA264_13655 0.71 -1.8
3,192,493 + CA264_13655 0.71 -0.3
3,192,493 + CA264_13655 0.71 +0.0
3,192,494 - CA264_13655 0.71 +0.4
3,192,494 - CA264_13655 0.71 -1.9
3,192,494 - CA264_13655 0.71 -0.1
3,192,494 - CA264_13655 0.71 -0.6
3,192,495 + CA264_13655 0.71 +0.4
3,192,495 + CA264_13655 0.71 -1.0
3,192,495 + CA264_13655 0.71 -0.4
3,192,498 + CA264_13655 0.72 -0.1
3,192,499 - CA264_13655 0.72 -0.3
3,192,499 - CA264_13655 0.72 -1.4
3,192,601 + CA264_13655 0.85 -0.9
3,192,601 + CA264_13655 0.85 +0.9
3,192,602 - CA264_13655 0.85 +0.9
3,192,602 - CA264_13655 0.85 -0.5
3,192,657 + -0.4
3,192,708 + +0.2
3,192,708 + +0.9
3,192,735 + -0.9
3,192,881 - -0.3
3,192,901 + +0.7
3,192,903 + -0.4
3,192,903 + +0.1
3,192,904 - -2.9
3,193,359 + CA264_13660 0.31 +1.1
3,193,600 + CA264_13660 0.50 -1.2
3,193,672 + CA264_13660 0.56 -2.4
3,193,822 + CA264_13660 0.68 -1.2
3,193,822 + CA264_13660 0.68 -1.3
3,193,822 + CA264_13660 0.68 -1.3
3,193,870 + CA264_13660 0.72 -0.7
3,193,872 + CA264_13660 0.72 -2.9
3,194,013 + CA264_13660 0.83 -0.7
3,194,013 + CA264_13660 0.83 -0.7
3,194,218 + -1.5
3,194,257 + -3.4
3,194,452 + -2.9
3,194,496 + -1.8
3,194,496 + -0.8
3,194,734 + CA264_13665 0.13 +0.1
3,195,141 + CA264_13665 0.34 +0.5

Or see this region's nucleotide sequence