Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13065

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13055 and CA264_13060 are separated by 388 nucleotidesCA264_13060 and CA264_13065 are separated by 117 nucleotidesCA264_13065 and CA264_13070 are separated by 60 nucleotides CA264_13055: CA264_13055 - alpha-glucosidase, at 3,043,315 to 3,045,450 _13055 CA264_13060: CA264_13060 - tRNA-Ser, at 3,045,839 to 3,045,926 _13060 CA264_13065: CA264_13065 - DUF4153 domain-containing protein, at 3,046,044 to 3,047,912 _13065 CA264_13070: CA264_13070 - ribonuclease bn, at 3,047,973 to 3,048,944 _13070 Position (kb) 3046 3047 3048Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3045.152 kb on + strand, within CA264_13055at 3045.277 kb on + strandat 3045.309 kb on + strandat 3045.310 kb on - strandat 3045.312 kb on - strandat 3045.316 kb on + strandat 3045.316 kb on + strandat 3045.316 kb on + strandat 3045.317 kb on - strandat 3045.317 kb on - strandat 3045.351 kb on + strandat 3045.412 kb on - strandat 3045.479 kb on - strandat 3045.502 kb on - strandat 3045.502 kb on - strandat 3045.502 kb on - strandat 3045.504 kb on - strandat 3045.504 kb on - strandat 3045.543 kb on - strandat 3045.588 kb on - strandat 3045.641 kb on - strandat 3045.681 kb on + strandat 3045.681 kb on + strandat 3045.689 kb on + strandat 3045.828 kb on + strandat 3045.999 kb on + strandat 3046.000 kb on - strandat 3046.108 kb on + strandat 3046.131 kb on + strandat 3046.186 kb on - strandat 3046.186 kb on - strandat 3046.243 kb on - strand, within CA264_13065at 3046.267 kb on + strand, within CA264_13065at 3046.274 kb on + strand, within CA264_13065at 3046.322 kb on + strand, within CA264_13065at 3046.322 kb on + strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.323 kb on - strand, within CA264_13065at 3046.325 kb on - strand, within CA264_13065at 3046.325 kb on - strand, within CA264_13065at 3046.350 kb on + strand, within CA264_13065at 3046.350 kb on + strand, within CA264_13065at 3046.351 kb on - strand, within CA264_13065at 3046.351 kb on - strand, within CA264_13065at 3046.444 kb on + strand, within CA264_13065at 3046.445 kb on - strand, within CA264_13065at 3046.445 kb on - strand, within CA264_13065at 3046.492 kb on - strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.563 kb on + strand, within CA264_13065at 3046.564 kb on - strand, within CA264_13065at 3046.564 kb on - strand, within CA264_13065at 3046.564 kb on - strand, within CA264_13065at 3046.565 kb on + strand, within CA264_13065at 3046.565 kb on + strand, within CA264_13065at 3046.565 kb on + strand, within CA264_13065at 3046.565 kb on + strand, within CA264_13065at 3046.565 kb on + strand, within CA264_13065at 3046.568 kb on + strand, within CA264_13065at 3046.820 kb on + strand, within CA264_13065at 3046.820 kb on + strand, within CA264_13065at 3046.827 kb on + strand, within CA264_13065at 3046.829 kb on + strand, within CA264_13065at 3046.830 kb on - strand, within CA264_13065at 3046.910 kb on - strand, within CA264_13065at 3046.910 kb on - strand, within CA264_13065at 3046.994 kb on - strand, within CA264_13065at 3047.052 kb on + strand, within CA264_13065at 3047.053 kb on - strand, within CA264_13065at 3047.053 kb on - strand, within CA264_13065at 3047.133 kb on + strand, within CA264_13065at 3047.136 kb on + strand, within CA264_13065at 3047.136 kb on + strand, within CA264_13065at 3047.137 kb on - strand, within CA264_13065at 3047.137 kb on - strand, within CA264_13065at 3047.137 kb on - strand, within CA264_13065at 3047.138 kb on + strand, within CA264_13065at 3047.152 kb on + strand, within CA264_13065at 3047.152 kb on + strand, within CA264_13065at 3047.152 kb on + strand, within CA264_13065at 3047.153 kb on - strand, within CA264_13065at 3047.158 kb on + strand, within CA264_13065at 3047.159 kb on - strand, within CA264_13065at 3047.173 kb on + strand, within CA264_13065at 3047.174 kb on - strand, within CA264_13065at 3047.453 kb on + strand, within CA264_13065at 3047.539 kb on + strand, within CA264_13065at 3047.581 kb on + strand, within CA264_13065at 3047.602 kb on - strand, within CA264_13065at 3047.651 kb on - strand, within CA264_13065at 3047.725 kb on + strand, within CA264_13065at 3047.828 kb on + strandat 3047.828 kb on + strandat 3047.828 kb on + strandat 3047.935 kb on + strandat 3047.935 kb on + strandat 3047.942 kb on - strandat 3048.038 kb on + strandat 3048.069 kb on + strandat 3048.070 kb on - strandat 3048.071 kb on + strand, within CA264_13070at 3048.071 kb on + strand, within CA264_13070at 3048.072 kb on - strand, within CA264_13070at 3048.133 kb on + strand, within CA264_13070at 3048.134 kb on - strand, within CA264_13070at 3048.266 kb on - strand, within CA264_13070at 3048.266 kb on - strand, within CA264_13070at 3048.268 kb on + strand, within CA264_13070at 3048.268 kb on + strand, within CA264_13070at 3048.269 kb on - strand, within CA264_13070at 3048.272 kb on + strand, within CA264_13070at 3048.335 kb on + strand, within CA264_13070at 3048.338 kb on - strand, within CA264_13070at 3048.338 kb on - strand, within CA264_13070at 3048.341 kb on + strand, within CA264_13070at 3048.341 kb on + strand, within CA264_13070at 3048.341 kb on + strand, within CA264_13070at 3048.341 kb on + strand, within CA264_13070at 3048.342 kb on - strand, within CA264_13070at 3048.342 kb on - strand, within CA264_13070at 3048.342 kb on - strand, within CA264_13070at 3048.343 kb on + strand, within CA264_13070at 3048.343 kb on + strand, within CA264_13070at 3048.343 kb on + strand, within CA264_13070at 3048.344 kb on - strand, within CA264_13070at 3048.344 kb on - strand, within CA264_13070at 3048.344 kb on - strand, within CA264_13070at 3048.344 kb on - strand, within CA264_13070at 3048.365 kb on - strand, within CA264_13070at 3048.478 kb on + strand, within CA264_13070at 3048.479 kb on - strand, within CA264_13070at 3048.498 kb on - strand, within CA264_13070at 3048.501 kb on + strand, within CA264_13070at 3048.502 kb on + strand, within CA264_13070at 3048.502 kb on + strand, within CA264_13070at 3048.503 kb on - strand, within CA264_13070at 3048.503 kb on - strand, within CA264_13070at 3048.604 kb on - strand, within CA264_13070at 3048.626 kb on - strand, within CA264_13070at 3048.678 kb on - strand, within CA264_13070at 3048.711 kb on + strand, within CA264_13070at 3048.755 kb on + strand, within CA264_13070at 3048.755 kb on + strand, within CA264_13070at 3048.782 kb on - strand, within CA264_13070at 3048.845 kb on - strand, within CA264_13070at 3048.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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3,045,152 + CA264_13055 0.86 -0.3
3,045,277 + +0.8
3,045,309 + -0.3
3,045,310 - -0.2
3,045,312 - -0.6
3,045,316 + -1.2
3,045,316 + -0.7
3,045,316 + -1.0
3,045,317 - -0.4
3,045,317 - +0.0
3,045,351 + +1.0
3,045,412 - -0.3
3,045,479 - +0.5
3,045,502 - -0.3
3,045,502 - +1.7
3,045,502 - +0.9
3,045,504 - +0.6
3,045,504 - +0.0
3,045,543 - +1.4
3,045,588 - +1.2
3,045,641 - -0.4
3,045,681 + +1.3
3,045,681 + -3.1
3,045,689 + +0.4
3,045,828 + -0.7
3,045,999 + +0.1
3,046,000 - -0.2
3,046,108 + -0.1
3,046,131 + -0.2
3,046,186 - -0.4
3,046,186 - +3.8
3,046,243 - CA264_13065 0.11 +0.3
3,046,267 + CA264_13065 0.12 -0.1
3,046,274 + CA264_13065 0.12 -0.8
3,046,322 + CA264_13065 0.15 +0.4
3,046,322 + CA264_13065 0.15 -0.2
3,046,323 - CA264_13065 0.15 -0.6
3,046,323 - CA264_13065 0.15 +2.4
3,046,323 - CA264_13065 0.15 +0.1
3,046,323 - CA264_13065 0.15 +1.0
3,046,325 - CA264_13065 0.15 +0.1
3,046,325 - CA264_13065 0.15 -0.4
3,046,350 + CA264_13065 0.16 -0.8
3,046,350 + CA264_13065 0.16 -1.3
3,046,351 - CA264_13065 0.16 -1.1
3,046,351 - CA264_13065 0.16 -0.4
3,046,444 + CA264_13065 0.21 +0.5
3,046,445 - CA264_13065 0.21 -0.1
3,046,445 - CA264_13065 0.21 +0.5
3,046,492 - CA264_13065 0.24 -0.2
3,046,563 + CA264_13065 0.28 +0.0
3,046,563 + CA264_13065 0.28 +0.1
3,046,563 + CA264_13065 0.28 -1.1
3,046,563 + CA264_13065 0.28 -0.3
3,046,563 + CA264_13065 0.28 +0.0
3,046,563 + CA264_13065 0.28 -0.5
3,046,563 + CA264_13065 0.28 -0.5
3,046,564 - CA264_13065 0.28 -0.3
3,046,564 - CA264_13065 0.28 -0.7
3,046,564 - CA264_13065 0.28 +0.1
3,046,565 + CA264_13065 0.28 -0.6
3,046,565 + CA264_13065 0.28 +0.8
3,046,565 + CA264_13065 0.28 +1.0
3,046,565 + CA264_13065 0.28 +0.1
3,046,565 + CA264_13065 0.28 -0.4
3,046,568 + CA264_13065 0.28 -0.0
3,046,820 + CA264_13065 0.42 +1.2
3,046,820 + CA264_13065 0.42 -0.4
3,046,827 + CA264_13065 0.42 +0.3
3,046,829 + CA264_13065 0.42 +0.1
3,046,830 - CA264_13065 0.42 -2.3
3,046,910 - CA264_13065 0.46 +1.4
3,046,910 - CA264_13065 0.46 -1.9
3,046,994 - CA264_13065 0.51 -1.4
3,047,052 + CA264_13065 0.54 -0.6
3,047,053 - CA264_13065 0.54 +0.3
3,047,053 - CA264_13065 0.54 -0.3
3,047,133 + CA264_13065 0.58 +0.4
3,047,136 + CA264_13065 0.58 -0.2
3,047,136 + CA264_13065 0.58 -0.3
3,047,137 - CA264_13065 0.58 -0.1
3,047,137 - CA264_13065 0.58 +2.0
3,047,137 - CA264_13065 0.58 -2.0
3,047,138 + CA264_13065 0.59 +0.0
3,047,152 + CA264_13065 0.59 -0.0
3,047,152 + CA264_13065 0.59 -0.6
3,047,152 + CA264_13065 0.59 +0.0
3,047,153 - CA264_13065 0.59 +0.1
3,047,158 + CA264_13065 0.60 +0.0
3,047,159 - CA264_13065 0.60 -1.0
3,047,173 + CA264_13065 0.60 +0.7
3,047,174 - CA264_13065 0.60 -2.5
3,047,453 + CA264_13065 0.75 +1.0
3,047,539 + CA264_13065 0.80 +0.3
3,047,581 + CA264_13065 0.82 +0.3
3,047,602 - CA264_13065 0.83 -0.7
3,047,651 - CA264_13065 0.86 -2.0
3,047,725 + CA264_13065 0.90 +0.9
3,047,828 + +1.0
3,047,828 + +1.6
3,047,828 + +0.5
3,047,935 + +0.8
3,047,935 + +0.8
3,047,942 - +0.7
3,048,038 + +2.3
3,048,069 + +1.4
3,048,070 - +0.5
3,048,071 + CA264_13070 0.10 +2.0
3,048,071 + CA264_13070 0.10 +1.8
3,048,072 - CA264_13070 0.10 +1.2
3,048,133 + CA264_13070 0.16 +0.9
3,048,134 - CA264_13070 0.17 +1.3
3,048,266 - CA264_13070 0.30 +1.6
3,048,266 - CA264_13070 0.30 +0.9
3,048,268 + CA264_13070 0.30 +0.9
3,048,268 + CA264_13070 0.30 +1.2
3,048,269 - CA264_13070 0.30 +1.5
3,048,272 + CA264_13070 0.31 +1.2
3,048,335 + CA264_13070 0.37 +0.4
3,048,338 - CA264_13070 0.38 +1.9
3,048,338 - CA264_13070 0.38 +2.2
3,048,341 + CA264_13070 0.38 +0.3
3,048,341 + CA264_13070 0.38 +1.9
3,048,341 + CA264_13070 0.38 +1.2
3,048,341 + CA264_13070 0.38 +2.6
3,048,342 - CA264_13070 0.38 +1.4
3,048,342 - CA264_13070 0.38 +0.3
3,048,342 - CA264_13070 0.38 +1.1
3,048,343 + CA264_13070 0.38 +1.3
3,048,343 + CA264_13070 0.38 +0.9
3,048,343 + CA264_13070 0.38 +1.6
3,048,344 - CA264_13070 0.38 +0.5
3,048,344 - CA264_13070 0.38 +1.8
3,048,344 - CA264_13070 0.38 +1.3
3,048,344 - CA264_13070 0.38 +1.0
3,048,365 - CA264_13070 0.40 +1.7
3,048,478 + CA264_13070 0.52 +2.1
3,048,479 - CA264_13070 0.52 +1.2
3,048,498 - CA264_13070 0.54 +1.2
3,048,501 + CA264_13070 0.54 +1.6
3,048,502 + CA264_13070 0.54 +2.2
3,048,502 + CA264_13070 0.54 +1.5
3,048,503 - CA264_13070 0.55 +1.0
3,048,503 - CA264_13070 0.55 +0.3
3,048,604 - CA264_13070 0.65 +1.0
3,048,626 - CA264_13070 0.67 +1.0
3,048,678 - CA264_13070 0.73 +0.4
3,048,711 + CA264_13070 0.76 +1.8
3,048,755 + CA264_13070 0.80 +2.2
3,048,755 + CA264_13070 0.80 +1.9
3,048,782 - CA264_13070 0.83 +1.4
3,048,845 - CA264_13070 0.90 -0.3
3,048,900 - +0.6

Or see this region's nucleotide sequence