Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13045 and CA264_13050 are separated by 101 nucleotides CA264_13050 and CA264_13055 are separated by 328 nucleotides
CA264_13045: CA264_13045 - transporter, at 3,040,261 to 3,041,607
_13045
CA264_13050: CA264_13050 - hypothetical protein, at 3,041,709 to 3,042,986
_13050
CA264_13055: CA264_13055 - alpha-glucosidase, at 3,043,315 to 3,045,450
_13055
Position (kb)
3041
3042
3043 Strain fitness (log2 ratio)
-2
-1
0
1 at 3040.711 kb on + strand, within CA264_13045 at 3040.714 kb on + strand, within CA264_13045 at 3040.804 kb on + strand, within CA264_13045 at 3040.812 kb on - strand, within CA264_13045 at 3040.855 kb on + strand, within CA264_13045 at 3040.920 kb on - strand, within CA264_13045 at 3041.167 kb on + strand, within CA264_13045 at 3041.167 kb on + strand, within CA264_13045 at 3041.172 kb on + strand, within CA264_13045 at 3041.172 kb on + strand, within CA264_13045 at 3041.211 kb on + strand, within CA264_13045 at 3041.238 kb on + strand, within CA264_13045 at 3041.270 kb on + strand, within CA264_13045 at 3041.292 kb on - strand, within CA264_13045 at 3041.292 kb on - strand, within CA264_13045 at 3041.532 kb on + strand at 3041.533 kb on - strand at 3041.533 kb on - strand at 3041.564 kb on + strand at 3041.565 kb on - strand at 3041.633 kb on - strand at 3041.642 kb on + strand at 3041.661 kb on - strand at 3041.662 kb on + strand at 3041.676 kb on + strand at 3041.677 kb on - strand at 3041.677 kb on - strand at 3041.708 kb on + strand at 3041.709 kb on - strand at 3041.753 kb on - strand at 3041.882 kb on - strand, within CA264_13050 at 3041.903 kb on - strand, within CA264_13050 at 3041.928 kb on + strand, within CA264_13050 at 3041.928 kb on + strand, within CA264_13050 at 3041.929 kb on - strand, within CA264_13050 at 3041.995 kb on - strand, within CA264_13050 at 3041.995 kb on - strand, within CA264_13050 at 3041.995 kb on - strand, within CA264_13050 at 3042.027 kb on - strand, within CA264_13050 at 3042.047 kb on - strand, within CA264_13050 at 3042.076 kb on + strand, within CA264_13050 at 3042.160 kb on + strand, within CA264_13050 at 3042.319 kb on + strand, within CA264_13050 at 3042.411 kb on - strand, within CA264_13050 at 3042.411 kb on - strand, within CA264_13050 at 3042.423 kb on - strand, within CA264_13050 at 3042.452 kb on + strand, within CA264_13050 at 3042.452 kb on + strand, within CA264_13050 at 3042.454 kb on + strand, within CA264_13050 at 3042.454 kb on + strand, within CA264_13050 at 3042.454 kb on + strand, within CA264_13050 at 3042.552 kb on + strand, within CA264_13050 at 3042.553 kb on - strand, within CA264_13050 at 3042.638 kb on - strand, within CA264_13050 at 3042.639 kb on + strand, within CA264_13050 at 3042.640 kb on - strand, within CA264_13050 at 3042.679 kb on - strand, within CA264_13050 at 3042.726 kb on - strand, within CA264_13050 at 3042.808 kb on + strand, within CA264_13050 at 3042.808 kb on + strand, within CA264_13050 at 3042.808 kb on + strand, within CA264_13050 at 3042.808 kb on + strand, within CA264_13050 at 3042.808 kb on + strand, within CA264_13050 at 3042.809 kb on - strand, within CA264_13050 at 3042.812 kb on + strand, within CA264_13050 at 3042.813 kb on - strand, within CA264_13050 at 3042.813 kb on - strand, within CA264_13050 at 3042.813 kb on - strand, within CA264_13050 at 3042.839 kb on + strand, within CA264_13050 at 3042.985 kb on - strand at 3042.985 kb on - strand at 3043.155 kb on + strand at 3043.195 kb on + strand at 3043.195 kb on + strand at 3043.244 kb on - strand at 3043.244 kb on - strand at 3043.362 kb on + strand at 3043.366 kb on + strand at 3043.366 kb on + strand at 3043.366 kb on + strand at 3043.414 kb on - strand at 3043.443 kb on - strand at 3043.443 kb on - strand at 3043.487 kb on + strand at 3043.488 kb on - strand at 3043.502 kb on + strand at 3043.574 kb on - strand, within CA264_13055 at 3043.577 kb on + strand, within CA264_13055 at 3043.578 kb on - strand, within CA264_13055 at 3043.578 kb on - strand, within CA264_13055 at 3043.616 kb on - strand, within CA264_13055 at 3043.620 kb on - strand, within CA264_13055 at 3043.647 kb on - strand, within CA264_13055 at 3043.650 kb on + strand, within CA264_13055 at 3043.650 kb on + strand, within CA264_13055 at 3043.651 kb on - strand, within CA264_13055 at 3043.651 kb on - strand, within CA264_13055 at 3043.709 kb on + strand, within CA264_13055 at 3043.710 kb on - strand, within CA264_13055 at 3043.710 kb on - strand, within CA264_13055 at 3043.710 kb on - strand, within CA264_13055 at 3043.748 kb on + strand, within CA264_13055 at 3043.748 kb on + strand, within CA264_13055 at 3043.749 kb on - strand, within CA264_13055 at 3043.756 kb on + strand, within CA264_13055 at 3043.757 kb on - strand, within CA264_13055 at 3043.760 kb on + strand, within CA264_13055 at 3043.760 kb on + strand, within CA264_13055 at 3043.761 kb on - strand, within CA264_13055 at 3043.761 kb on - strand, within CA264_13055 at 3043.761 kb on - strand, within CA264_13055 at 3043.761 kb on - strand, within CA264_13055 at 3043.761 kb on - strand, within CA264_13055 at 3043.763 kb on + strand, within CA264_13055 at 3043.764 kb on - strand, within CA264_13055 at 3043.788 kb on + strand, within CA264_13055 at 3043.814 kb on + strand, within CA264_13055 at 3043.817 kb on + strand, within CA264_13055 at 3043.818 kb on - strand, within CA264_13055 at 3043.849 kb on - strand, within CA264_13055 at 3043.850 kb on + strand, within CA264_13055 at 3043.850 kb on + strand, within CA264_13055 at 3043.851 kb on - strand, within CA264_13055 at 3043.971 kb on - strand, within CA264_13055
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 3,040,711 + CA264_13045 0.33 -0.5 3,040,714 + CA264_13045 0.34 +0.1 3,040,804 + CA264_13045 0.40 -0.2 3,040,812 - CA264_13045 0.41 -0.7 3,040,855 + CA264_13045 0.44 -0.8 3,040,920 - CA264_13045 0.49 +0.2 3,041,167 + CA264_13045 0.67 -0.8 3,041,167 + CA264_13045 0.67 -1.2 3,041,172 + CA264_13045 0.68 -0.9 3,041,172 + CA264_13045 0.68 -0.6 3,041,211 + CA264_13045 0.71 -0.6 3,041,238 + CA264_13045 0.73 +0.3 3,041,270 + CA264_13045 0.75 +0.0 3,041,292 - CA264_13045 0.77 -0.7 3,041,292 - CA264_13045 0.77 +0.0 3,041,532 + -0.1 3,041,533 - -0.4 3,041,533 - +0.6 3,041,564 + -1.2 3,041,565 - -1.4 3,041,633 - -0.1 3,041,642 + -1.1 3,041,661 - -0.7 3,041,662 + +0.5 3,041,676 + -0.1 3,041,677 - +0.1 3,041,677 - +0.2 3,041,708 + -1.3 3,041,709 - +0.0 3,041,753 - -0.2 3,041,882 - CA264_13050 0.14 +0.2 3,041,903 - CA264_13050 0.15 +0.4 3,041,928 + CA264_13050 0.17 +0.0 3,041,928 + CA264_13050 0.17 +0.3 3,041,929 - CA264_13050 0.17 -0.5 3,041,995 - CA264_13050 0.22 +0.9 3,041,995 - CA264_13050 0.22 -0.4 3,041,995 - CA264_13050 0.22 -0.5 3,042,027 - CA264_13050 0.25 -0.8 3,042,047 - CA264_13050 0.26 -0.6 3,042,076 + CA264_13050 0.29 -1.1 3,042,160 + CA264_13050 0.35 +0.7 3,042,319 + CA264_13050 0.48 +0.9 3,042,411 - CA264_13050 0.55 -0.4 3,042,411 - CA264_13050 0.55 +0.2 3,042,423 - CA264_13050 0.56 -0.8 3,042,452 + CA264_13050 0.58 -0.9 3,042,452 + CA264_13050 0.58 -0.6 3,042,454 + CA264_13050 0.58 -0.2 3,042,454 + CA264_13050 0.58 +0.8 3,042,454 + CA264_13050 0.58 -0.8 3,042,552 + CA264_13050 0.66 +0.2 3,042,553 - CA264_13050 0.66 -0.2 3,042,638 - CA264_13050 0.73 -0.8 3,042,639 + CA264_13050 0.73 -0.7 3,042,640 - CA264_13050 0.73 +0.6 3,042,679 - CA264_13050 0.76 +0.2 3,042,726 - CA264_13050 0.80 -0.4 3,042,808 + CA264_13050 0.86 +0.2 3,042,808 + CA264_13050 0.86 -0.2 3,042,808 + CA264_13050 0.86 -0.1 3,042,808 + CA264_13050 0.86 -1.5 3,042,808 + CA264_13050 0.86 -1.4 3,042,809 - CA264_13050 0.86 -0.5 3,042,812 + CA264_13050 0.86 -0.5 3,042,813 - CA264_13050 0.86 +0.0 3,042,813 - CA264_13050 0.86 +0.2 3,042,813 - CA264_13050 0.86 +0.6 3,042,839 + CA264_13050 0.88 -1.0 3,042,985 - +0.6 3,042,985 - -0.4 3,043,155 + -0.0 3,043,195 + -0.1 3,043,195 + -0.2 3,043,244 - -0.1 3,043,244 - -0.9 3,043,362 + +0.5 3,043,366 + -0.3 3,043,366 + +1.6 3,043,366 + +0.6 3,043,414 - -0.1 3,043,443 - -0.2 3,043,443 - -0.7 3,043,487 + +0.1 3,043,488 - +0.4 3,043,502 + -0.1 3,043,574 - CA264_13055 0.12 -0.7 3,043,577 + CA264_13055 0.12 -0.3 3,043,578 - CA264_13055 0.12 -0.2 3,043,578 - CA264_13055 0.12 +0.6 3,043,616 - CA264_13055 0.14 -0.1 3,043,620 - CA264_13055 0.14 -0.5 3,043,647 - CA264_13055 0.16 -0.3 3,043,650 + CA264_13055 0.16 -0.4 3,043,650 + CA264_13055 0.16 -0.8 3,043,651 - CA264_13055 0.16 +0.1 3,043,651 - CA264_13055 0.16 -0.7 3,043,709 + CA264_13055 0.18 -0.5 3,043,710 - CA264_13055 0.18 +0.9 3,043,710 - CA264_13055 0.18 -2.7 3,043,710 - CA264_13055 0.18 -0.1 3,043,748 + CA264_13055 0.20 -1.1 3,043,748 + CA264_13055 0.20 -0.7 3,043,749 - CA264_13055 0.20 +1.0 3,043,756 + CA264_13055 0.21 +0.4 3,043,757 - CA264_13055 0.21 +0.0 3,043,760 + CA264_13055 0.21 -0.4 3,043,760 + CA264_13055 0.21 +0.4 3,043,761 - CA264_13055 0.21 +0.4 3,043,761 - CA264_13055 0.21 -0.0 3,043,761 - CA264_13055 0.21 +0.0 3,043,761 - CA264_13055 0.21 +0.1 3,043,761 - CA264_13055 0.21 -0.3 3,043,763 + CA264_13055 0.21 +0.3 3,043,764 - CA264_13055 0.21 -1.3 3,043,788 + CA264_13055 0.22 +0.1 3,043,814 + CA264_13055 0.23 +0.3 3,043,817 + CA264_13055 0.24 +0.0 3,043,818 - CA264_13055 0.24 -0.5 3,043,849 - CA264_13055 0.25 +0.5 3,043,850 + CA264_13055 0.25 -0.6 3,043,850 + CA264_13055 0.25 -0.3 3,043,851 - CA264_13055 0.25 +0.8 3,043,971 - CA264_13055 0.31 -0.3
Or see this region's nucleotide sequence