Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11905

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11895 and CA264_11900 are separated by 120 nucleotidesCA264_11900 and CA264_11905 are separated by 100 nucleotidesCA264_11905 and CA264_11910 are separated by 306 nucleotides CA264_11895: CA264_11895 - T9SS C-terminal target domain-containing protein, at 2,762,567 to 2,764,378 _11895 CA264_11900: CA264_11900 - penicillin-binding protein, at 2,764,499 to 2,765,275 _11900 CA264_11905: CA264_11905 - D-alanine--D-alanine ligase, at 2,765,376 to 2,768,078 _11905 CA264_11910: CA264_11910 - replicative DNA helicase, at 2,768,385 to 2,769,953 _11910 Position (kb) 2765 2766 2767 2768 2769Strain fitness (log2 ratio) -3 -2 -1 0 1at 2764.441 kb on + strandat 2764.500 kb on + strandat 2764.506 kb on - strandat 2765.327 kb on + strandat 2765.361 kb on - strandat 2765.361 kb on - strandat 2765.377 kb on + strandat 2765.377 kb on + strandat 2765.378 kb on - strandat 2768.106 kb on + strandat 2768.138 kb on + strandat 2768.138 kb on + strandat 2768.146 kb on - strandat 2768.147 kb on + strandat 2768.325 kb on + strandat 2768.342 kb on - strandat 2768.368 kb on + strandat 2768.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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2,764,441 + +0.5
2,764,500 + -3.2
2,764,506 - -0.5
2,765,327 + -3.2
2,765,361 - -0.3
2,765,361 - -2.2
2,765,377 + -3.3
2,765,377 + -3.4
2,765,378 - -0.7
2,768,106 + -0.1
2,768,138 + -0.4
2,768,138 + -0.7
2,768,146 - -1.6
2,768,147 + -0.6
2,768,325 + -1.3
2,768,342 - -0.6
2,768,368 + +0.4
2,768,369 - -0.5

Or see this region's nucleotide sequence