Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10970 and CA264_10975 are separated by 266 nucleotides CA264_10975 and CA264_10980 are separated by 54 nucleotides CA264_10980 and CA264_10985 are separated by 79 nucleotides
CA264_10970: CA264_10970 - ferredoxin, at 2,530,188 to 2,531,276
_10970
CA264_10975: CA264_10975 - Pathogenesis-related transcriptional factor and ERF protein, at 2,531,543 to 2,532,112
_10975
CA264_10980: CA264_10980 - peptidase M23, at 2,532,167 to 2,532,883
_10980
CA264_10985: CA264_10985 - mechanosensitive ion channel protein MscS, at 2,532,963 to 2,533,805
_10985
Position (kb)
2531
2532
2533 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2530.636 kb on + strand, within CA264_10970 at 2530.636 kb on + strand, within CA264_10970 at 2530.637 kb on - strand, within CA264_10970 at 2530.639 kb on + strand, within CA264_10970 at 2530.639 kb on + strand, within CA264_10970 at 2530.639 kb on + strand, within CA264_10970 at 2530.640 kb on - strand, within CA264_10970 at 2530.695 kb on - strand, within CA264_10970 at 2530.695 kb on - strand, within CA264_10970 at 2530.744 kb on + strand, within CA264_10970 at 2530.745 kb on - strand, within CA264_10970 at 2530.745 kb on - strand, within CA264_10970 at 2530.751 kb on - strand, within CA264_10970 at 2530.774 kb on + strand, within CA264_10970 at 2530.811 kb on + strand, within CA264_10970 at 2530.811 kb on + strand, within CA264_10970 at 2530.837 kb on + strand, within CA264_10970 at 2531.008 kb on - strand, within CA264_10970 at 2531.029 kb on + strand, within CA264_10970 at 2531.029 kb on + strand, within CA264_10970 at 2531.030 kb on - strand, within CA264_10970 at 2531.061 kb on + strand, within CA264_10970 at 2531.062 kb on - strand, within CA264_10970 at 2531.149 kb on - strand, within CA264_10970 at 2531.244 kb on + strand at 2531.258 kb on + strand at 2531.259 kb on - strand at 2531.270 kb on + strand at 2531.271 kb on - strand at 2531.301 kb on - strand at 2531.301 kb on - strand at 2531.301 kb on - strand at 2531.311 kb on - strand at 2531.341 kb on - strand at 2531.364 kb on - strand at 2531.469 kb on + strand at 2531.498 kb on + strand at 2531.498 kb on + strand at 2531.509 kb on - strand at 2531.511 kb on + strand at 2531.529 kb on - strand at 2531.599 kb on + strand at 2531.609 kb on + strand, within CA264_10975 at 2531.738 kb on + strand, within CA264_10975 at 2531.802 kb on + strand, within CA264_10975 at 2531.803 kb on - strand, within CA264_10975 at 2531.939 kb on + strand, within CA264_10975 at 2531.957 kb on + strand, within CA264_10975 at 2531.958 kb on - strand, within CA264_10975 at 2531.997 kb on + strand, within CA264_10975 at 2532.018 kb on - strand, within CA264_10975 at 2532.166 kb on + strand at 2532.166 kb on + strand at 2532.167 kb on - strand at 2532.568 kb on + strand, within CA264_10980 at 2532.602 kb on + strand, within CA264_10980 at 2532.603 kb on - strand, within CA264_10980 at 2532.611 kb on + strand, within CA264_10980 at 2532.612 kb on - strand, within CA264_10980 at 2532.742 kb on + strand, within CA264_10980 at 2532.744 kb on + strand, within CA264_10980 at 2532.744 kb on + strand, within CA264_10980 at 2532.809 kb on + strand, within CA264_10980 at 2532.809 kb on + strand, within CA264_10980 at 2532.810 kb on - strand, within CA264_10980 at 2532.881 kb on + strand at 2532.951 kb on + strand at 2532.957 kb on - strand at 2533.015 kb on - strand at 2533.015 kb on - strand at 2533.079 kb on - strand, within CA264_10985 at 2533.079 kb on - strand, within CA264_10985 at 2533.091 kb on - strand, within CA264_10985
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 2,530,636 + CA264_10970 0.41 +0.4 2,530,636 + CA264_10970 0.41 +0.9 2,530,637 - CA264_10970 0.41 +0.7 2,530,639 + CA264_10970 0.41 +1.3 2,530,639 + CA264_10970 0.41 -1.3 2,530,639 + CA264_10970 0.41 +0.8 2,530,640 - CA264_10970 0.42 -0.3 2,530,695 - CA264_10970 0.47 +1.6 2,530,695 - CA264_10970 0.47 +1.3 2,530,744 + CA264_10970 0.51 +0.3 2,530,745 - CA264_10970 0.51 +1.4 2,530,745 - CA264_10970 0.51 +1.1 2,530,751 - CA264_10970 0.52 +1.4 2,530,774 + CA264_10970 0.54 +0.3 2,530,811 + CA264_10970 0.57 +1.6 2,530,811 + CA264_10970 0.57 +0.3 2,530,837 + CA264_10970 0.60 -1.3 2,531,008 - CA264_10970 0.75 +1.3 2,531,029 + CA264_10970 0.77 +0.6 2,531,029 + CA264_10970 0.77 +0.1 2,531,030 - CA264_10970 0.77 +1.8 2,531,061 + CA264_10970 0.80 +0.3 2,531,062 - CA264_10970 0.80 +0.9 2,531,149 - CA264_10970 0.88 +1.4 2,531,244 + -0.1 2,531,258 + +0.4 2,531,259 - +1.0 2,531,270 + +0.1 2,531,271 - +0.8 2,531,301 - +0.4 2,531,301 - +0.8 2,531,301 - +0.7 2,531,311 - +0.7 2,531,341 - +1.1 2,531,364 - +1.3 2,531,469 + +0.6 2,531,498 + +1.4 2,531,498 + +0.7 2,531,509 - +0.7 2,531,511 + -0.7 2,531,529 - +0.3 2,531,599 + -1.8 2,531,609 + CA264_10975 0.12 -2.1 2,531,738 + CA264_10975 0.34 -1.0 2,531,802 + CA264_10975 0.45 -0.7 2,531,803 - CA264_10975 0.46 -1.1 2,531,939 + CA264_10975 0.69 -0.6 2,531,957 + CA264_10975 0.73 -0.9 2,531,958 - CA264_10975 0.73 -0.3 2,531,997 + CA264_10975 0.80 -2.0 2,532,018 - CA264_10975 0.83 -0.9 2,532,166 + -0.9 2,532,166 + -0.6 2,532,167 - +0.3 2,532,568 + CA264_10980 0.56 +0.7 2,532,602 + CA264_10980 0.61 +1.0 2,532,603 - CA264_10980 0.61 +0.7 2,532,611 + CA264_10980 0.62 +0.0 2,532,612 - CA264_10980 0.62 -1.7 2,532,742 + CA264_10980 0.80 -0.6 2,532,744 + CA264_10980 0.80 -0.0 2,532,744 + CA264_10980 0.80 -1.3 2,532,809 + CA264_10980 0.90 +0.1 2,532,809 + CA264_10980 0.90 -0.5 2,532,810 - CA264_10980 0.90 -0.2 2,532,881 + -0.0 2,532,951 + -0.2 2,532,957 - +0.3 2,533,015 - -0.8 2,533,015 - -1.4 2,533,079 - CA264_10985 0.14 +0.2 2,533,079 - CA264_10985 0.14 +1.2 2,533,091 - CA264_10985 0.15 -0.4
Or see this region's nucleotide sequence