Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10825

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10815 and CA264_10820 are separated by 13 nucleotidesCA264_10820 and CA264_10825 overlap by 14 nucleotidesCA264_10825 and CA264_10830 overlap by 4 nucleotides CA264_10815: CA264_10815 - cell division protein FtsA, at 2,499,637 to 2,500,944 _10815 CA264_10820: CA264_10820 - hypothetical protein, at 2,500,958 to 2,501,719 _10820 CA264_10825: CA264_10825 - UDP-N-acetylmuramate--L-alanine ligase, at 2,501,706 to 2,503,115 _10825 CA264_10830: CA264_10830 - undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase, at 2,503,112 to 2,504,224 _10830 Position (kb) 2501 2502 2503 2504Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2500.927 kb on + strandat 2500.945 kb on - strandat 2500.951 kb on + strandat 2500.951 kb on + strandat 2500.952 kb on - strandat 2500.952 kb on - strandat 2500.952 kb on - strandat 2500.952 kb on - strandat 2500.954 kb on - strandat 2501.734 kb on - strandat 2502.353 kb on - strand, within CA264_10825at 2502.515 kb on - strand, within CA264_10825at 2502.515 kb on - strand, within CA264_10825at 2502.517 kb on - strand, within CA264_10825at 2502.604 kb on - strand, within CA264_10825at 2502.773 kb on + strand, within CA264_10825at 2503.088 kb on - strandat 2503.093 kb on + strandat 2503.093 kb on + strandat 2503.094 kb on - strandat 2503.097 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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2,500,927 + -0.5
2,500,945 - -1.2
2,500,951 + +0.5
2,500,951 + -0.4
2,500,952 - +0.8
2,500,952 - +1.6
2,500,952 - +1.0
2,500,952 - +1.0
2,500,954 - +1.5
2,501,734 - -1.9
2,502,353 - CA264_10825 0.46 +0.5
2,502,515 - CA264_10825 0.57 -1.0
2,502,515 - CA264_10825 0.57 -1.4
2,502,517 - CA264_10825 0.58 -1.7
2,502,604 - CA264_10825 0.64 -1.7
2,502,773 + CA264_10825 0.76 -3.1
2,503,088 - -3.4
2,503,093 + -2.4
2,503,093 + -4.1
2,503,094 - -2.1
2,503,097 + -4.7

Or see this region's nucleotide sequence