Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10340 and CA264_10345 overlap by 32 nucleotides CA264_10345 and CA264_10350 are separated by 193 nucleotides CA264_10350 and CA264_10355 are separated by 134 nucleotides
CA264_10340: CA264_10340 - recombinase family protein, at 2,404,150 to 2,405,688
_10340
CA264_10345: CA264_10345 - tRNA-Arg, at 2,405,657 to 2,405,733
_10345
CA264_10350: CA264_10350 - hypothetical protein, at 2,405,927 to 2,407,333
_10350
CA264_10355: CA264_10355 - hypothetical protein, at 2,407,468 to 2,408,946
_10355
Position (kb)
2405
2406
2407
2408 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2405.000 kb on - strand, within CA264_10340 at 2405.063 kb on - strand, within CA264_10340 at 2405.066 kb on - strand, within CA264_10340 at 2405.071 kb on + strand, within CA264_10340 at 2405.074 kb on + strand, within CA264_10340 at 2405.075 kb on - strand, within CA264_10340 at 2405.075 kb on - strand, within CA264_10340 at 2405.153 kb on - strand, within CA264_10340 at 2405.153 kb on - strand, within CA264_10340 at 2405.153 kb on - strand, within CA264_10340 at 2405.153 kb on - strand, within CA264_10340 at 2405.182 kb on + strand, within CA264_10340 at 2405.182 kb on + strand, within CA264_10340 at 2405.183 kb on - strand, within CA264_10340 at 2405.183 kb on - strand, within CA264_10340 at 2405.220 kb on + strand, within CA264_10340 at 2405.607 kb on - strand at 2405.757 kb on + strand at 2405.758 kb on - strand at 2405.807 kb on + strand at 2405.835 kb on - strand at 2405.849 kb on + strand at 2405.850 kb on - strand at 2405.851 kb on + strand at 2405.854 kb on + strand at 2405.855 kb on - strand at 2405.855 kb on - strand at 2405.924 kb on + strand at 2405.924 kb on + strand at 2405.925 kb on - strand at 2405.926 kb on + strand at 2405.927 kb on - strand at 2405.991 kb on - strand at 2405.991 kb on - strand at 2406.000 kb on - strand at 2406.039 kb on + strand at 2406.040 kb on - strand at 2406.042 kb on + strand at 2406.043 kb on - strand at 2406.045 kb on + strand at 2406.058 kb on - strand at 2406.058 kb on - strand at 2406.064 kb on + strand at 2406.065 kb on - strand at 2406.067 kb on + strand at 2406.067 kb on + strand at 2406.068 kb on - strand, within CA264_10350 at 2406.121 kb on + strand, within CA264_10350 at 2406.139 kb on + strand, within CA264_10350 at 2406.190 kb on + strand, within CA264_10350 at 2406.214 kb on - strand, within CA264_10350 at 2406.227 kb on - strand, within CA264_10350 at 2406.227 kb on - strand, within CA264_10350 at 2406.255 kb on + strand, within CA264_10350 at 2406.259 kb on + strand, within CA264_10350 at 2406.259 kb on + strand, within CA264_10350 at 2406.260 kb on - strand, within CA264_10350 at 2406.260 kb on - strand, within CA264_10350 at 2406.313 kb on + strand, within CA264_10350 at 2406.327 kb on + strand, within CA264_10350 at 2406.359 kb on + strand, within CA264_10350 at 2406.360 kb on - strand, within CA264_10350 at 2406.360 kb on - strand, within CA264_10350 at 2406.414 kb on + strand, within CA264_10350 at 2406.418 kb on - strand, within CA264_10350 at 2406.426 kb on - strand, within CA264_10350 at 2406.430 kb on + strand, within CA264_10350 at 2406.431 kb on - strand, within CA264_10350 at 2406.431 kb on - strand, within CA264_10350 at 2406.431 kb on - strand, within CA264_10350 at 2406.464 kb on - strand, within CA264_10350 at 2406.517 kb on + strand, within CA264_10350 at 2406.518 kb on - strand, within CA264_10350 at 2406.573 kb on - strand, within CA264_10350 at 2406.576 kb on + strand, within CA264_10350 at 2406.577 kb on - strand, within CA264_10350 at 2406.577 kb on - strand, within CA264_10350 at 2406.581 kb on + strand, within CA264_10350 at 2406.596 kb on - strand, within CA264_10350 at 2406.599 kb on + strand, within CA264_10350 at 2406.600 kb on - strand, within CA264_10350 at 2406.603 kb on - strand, within CA264_10350 at 2406.676 kb on - strand, within CA264_10350 at 2406.692 kb on + strand, within CA264_10350 at 2406.735 kb on - strand, within CA264_10350 at 2406.739 kb on + strand, within CA264_10350 at 2406.739 kb on - strand, within CA264_10350 at 2406.803 kb on + strand, within CA264_10350 at 2406.811 kb on + strand, within CA264_10350 at 2406.811 kb on + strand, within CA264_10350 at 2406.811 kb on + strand, within CA264_10350 at 2406.812 kb on - strand, within CA264_10350 at 2406.812 kb on - strand, within CA264_10350 at 2406.814 kb on - strand, within CA264_10350 at 2406.814 kb on - strand, within CA264_10350 at 2406.841 kb on - strand, within CA264_10350 at 2406.857 kb on - strand, within CA264_10350 at 2406.902 kb on - strand, within CA264_10350 at 2406.923 kb on + strand, within CA264_10350 at 2406.924 kb on - strand, within CA264_10350 at 2406.928 kb on + strand, within CA264_10350 at 2406.929 kb on - strand, within CA264_10350 at 2406.929 kb on - strand, within CA264_10350 at 2406.931 kb on - strand, within CA264_10350 at 2406.931 kb on - strand, within CA264_10350 at 2406.947 kb on - strand, within CA264_10350 at 2406.964 kb on - strand, within CA264_10350 at 2406.968 kb on - strand, within CA264_10350 at 2406.982 kb on + strand, within CA264_10350 at 2407.019 kb on + strand, within CA264_10350 at 2407.019 kb on + strand, within CA264_10350 at 2407.087 kb on + strand, within CA264_10350 at 2407.113 kb on + strand, within CA264_10350 at 2407.113 kb on + strand, within CA264_10350 at 2407.118 kb on + strand, within CA264_10350 at 2407.193 kb on + strand at 2407.194 kb on - strand at 2407.194 kb on - strand at 2407.195 kb on + strand at 2407.196 kb on - strand at 2407.209 kb on + strand at 2407.210 kb on - strand at 2407.210 kb on - strand at 2407.279 kb on - strand at 2407.291 kb on - strand at 2407.331 kb on + strand at 2407.426 kb on - strand at 2407.438 kb on - strand at 2407.445 kb on - strand at 2407.448 kb on + strand at 2407.451 kb on + strand at 2407.530 kb on + strand at 2407.531 kb on - strand at 2407.531 kb on - strand at 2407.567 kb on - strand at 2407.601 kb on + strand at 2407.602 kb on - strand at 2407.647 kb on + strand, within CA264_10355 at 2407.648 kb on - strand, within CA264_10355 at 2407.648 kb on - strand, within CA264_10355 at 2407.655 kb on - strand, within CA264_10355 at 2407.657 kb on + strand, within CA264_10355 at 2407.658 kb on - strand, within CA264_10355 at 2407.672 kb on - strand, within CA264_10355 at 2407.680 kb on + strand, within CA264_10355 at 2407.680 kb on + strand, within CA264_10355 at 2407.681 kb on - strand, within CA264_10355 at 2407.683 kb on + strand, within CA264_10355 at 2407.713 kb on - strand, within CA264_10355 at 2407.713 kb on - strand, within CA264_10355 at 2407.800 kb on + strand, within CA264_10355 at 2407.801 kb on - strand, within CA264_10355 at 2407.855 kb on - strand, within CA264_10355 at 2407.875 kb on - strand, within CA264_10355 at 2407.918 kb on + strand, within CA264_10355 at 2407.933 kb on + strand, within CA264_10355 at 2407.934 kb on - strand, within CA264_10355 at 2407.951 kb on + strand, within CA264_10355 at 2408.011 kb on + strand, within CA264_10355 at 2408.013 kb on + strand, within CA264_10355 at 2408.014 kb on - strand, within CA264_10355 at 2408.033 kb on + strand, within CA264_10355 at 2408.054 kb on + strand, within CA264_10355 at 2408.055 kb on - strand, within CA264_10355 at 2408.055 kb on - strand, within CA264_10355 at 2408.082 kb on + strand, within CA264_10355 at 2408.091 kb on + strand, within CA264_10355 at 2408.150 kb on - strand, within CA264_10355 at 2408.164 kb on - strand, within CA264_10355 at 2408.222 kb on + strand, within CA264_10355 at 2408.296 kb on - strand, within CA264_10355 at 2408.309 kb on + strand, within CA264_10355 at 2408.310 kb on - strand, within CA264_10355 at 2408.310 kb on - strand, within CA264_10355 at 2408.330 kb on + strand, within CA264_10355 at 2408.330 kb on + strand, within CA264_10355 at 2408.331 kb on - strand, within CA264_10355
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 2,405,000 - CA264_10340 0.55 -0.4 2,405,063 - CA264_10340 0.59 -1.2 2,405,066 - CA264_10340 0.60 +0.5 2,405,071 + CA264_10340 0.60 +0.6 2,405,074 + CA264_10340 0.60 +0.9 2,405,075 - CA264_10340 0.60 +0.2 2,405,075 - CA264_10340 0.60 +0.4 2,405,153 - CA264_10340 0.65 -0.5 2,405,153 - CA264_10340 0.65 +0.4 2,405,153 - CA264_10340 0.65 -0.4 2,405,153 - CA264_10340 0.65 -0.1 2,405,182 + CA264_10340 0.67 -0.0 2,405,182 + CA264_10340 0.67 +2.4 2,405,183 - CA264_10340 0.67 -0.3 2,405,183 - CA264_10340 0.67 -0.4 2,405,220 + CA264_10340 0.70 +1.9 2,405,607 - -0.8 2,405,757 + +0.5 2,405,758 - -2.8 2,405,807 + -0.6 2,405,835 - -1.0 2,405,849 + -0.1 2,405,850 - +0.1 2,405,851 + -0.0 2,405,854 + -1.9 2,405,855 - -0.9 2,405,855 - -0.2 2,405,924 + -1.0 2,405,924 + -1.4 2,405,925 - -0.0 2,405,926 + -1.3 2,405,927 - +0.5 2,405,991 - -0.1 2,405,991 - +0.0 2,406,000 - -0.9 2,406,039 + -0.2 2,406,040 - -0.8 2,406,042 + -0.8 2,406,043 - +0.8 2,406,045 + -0.1 2,406,058 - -0.5 2,406,058 - -0.6 2,406,064 + -0.0 2,406,065 - +0.6 2,406,067 + -0.5 2,406,067 + +0.2 2,406,068 - CA264_10350 0.10 -0.5 2,406,121 + CA264_10350 0.14 +1.3 2,406,139 + CA264_10350 0.15 -0.8 2,406,190 + CA264_10350 0.19 +0.7 2,406,214 - CA264_10350 0.20 +0.1 2,406,227 - CA264_10350 0.21 -0.3 2,406,227 - CA264_10350 0.21 -1.2 2,406,255 + CA264_10350 0.23 +0.4 2,406,259 + CA264_10350 0.24 -1.0 2,406,259 + CA264_10350 0.24 -0.0 2,406,260 - CA264_10350 0.24 -1.0 2,406,260 - CA264_10350 0.24 -0.0 2,406,313 + CA264_10350 0.27 +0.5 2,406,327 + CA264_10350 0.28 +2.0 2,406,359 + CA264_10350 0.31 +1.8 2,406,360 - CA264_10350 0.31 +0.6 2,406,360 - CA264_10350 0.31 -0.0 2,406,414 + CA264_10350 0.35 -1.9 2,406,418 - CA264_10350 0.35 +0.4 2,406,426 - CA264_10350 0.35 -0.2 2,406,430 + CA264_10350 0.36 -0.4 2,406,431 - CA264_10350 0.36 -2.6 2,406,431 - CA264_10350 0.36 -1.0 2,406,431 - CA264_10350 0.36 -0.3 2,406,464 - CA264_10350 0.38 -0.4 2,406,517 + CA264_10350 0.42 -0.5 2,406,518 - CA264_10350 0.42 -1.2 2,406,573 - CA264_10350 0.46 +0.1 2,406,576 + CA264_10350 0.46 -0.6 2,406,577 - CA264_10350 0.46 -0.2 2,406,577 - CA264_10350 0.46 -1.3 2,406,581 + CA264_10350 0.46 +0.8 2,406,596 - CA264_10350 0.48 -1.7 2,406,599 + CA264_10350 0.48 -0.0 2,406,600 - CA264_10350 0.48 -1.3 2,406,603 - CA264_10350 0.48 -1.5 2,406,676 - CA264_10350 0.53 -2.4 2,406,692 + CA264_10350 0.54 +0.7 2,406,735 - CA264_10350 0.57 -0.7 2,406,739 + CA264_10350 0.58 +0.1 2,406,739 - CA264_10350 0.58 -0.9 2,406,803 + CA264_10350 0.62 -1.3 2,406,811 + CA264_10350 0.63 +0.2 2,406,811 + CA264_10350 0.63 -0.3 2,406,811 + CA264_10350 0.63 -0.0 2,406,812 - CA264_10350 0.63 +0.5 2,406,812 - CA264_10350 0.63 -0.7 2,406,814 - CA264_10350 0.63 -0.6 2,406,814 - CA264_10350 0.63 +0.6 2,406,841 - CA264_10350 0.65 -0.4 2,406,857 - CA264_10350 0.66 +0.2 2,406,902 - CA264_10350 0.69 -0.5 2,406,923 + CA264_10350 0.71 -0.2 2,406,924 - CA264_10350 0.71 -0.9 2,406,928 + CA264_10350 0.71 -0.7 2,406,929 - CA264_10350 0.71 -0.4 2,406,929 - CA264_10350 0.71 +0.5 2,406,931 - CA264_10350 0.71 -0.4 2,406,931 - CA264_10350 0.71 -0.4 2,406,947 - CA264_10350 0.72 -0.5 2,406,964 - CA264_10350 0.74 -0.4 2,406,968 - CA264_10350 0.74 -2.2 2,406,982 + CA264_10350 0.75 +1.0 2,407,019 + CA264_10350 0.78 -0.0 2,407,019 + CA264_10350 0.78 -0.6 2,407,087 + CA264_10350 0.82 +0.5 2,407,113 + CA264_10350 0.84 +0.2 2,407,113 + CA264_10350 0.84 -0.2 2,407,118 + CA264_10350 0.85 +0.2 2,407,193 + +0.4 2,407,194 - -1.0 2,407,194 - -0.1 2,407,195 + -0.3 2,407,196 - -0.6 2,407,209 + -0.6 2,407,210 - -0.3 2,407,210 - -0.1 2,407,279 - -0.5 2,407,291 - +0.4 2,407,331 + +0.0 2,407,426 - -0.5 2,407,438 - -0.1 2,407,445 - +0.2 2,407,448 + +0.4 2,407,451 + +0.0 2,407,530 + +1.4 2,407,531 - -0.2 2,407,531 - -0.7 2,407,567 - +0.8 2,407,601 + -0.0 2,407,602 - -0.7 2,407,647 + CA264_10355 0.12 +1.3 2,407,648 - CA264_10355 0.12 -0.5 2,407,648 - CA264_10355 0.12 +0.4 2,407,655 - CA264_10355 0.13 -0.2 2,407,657 + CA264_10355 0.13 -0.4 2,407,658 - CA264_10355 0.13 -1.1 2,407,672 - CA264_10355 0.14 +0.7 2,407,680 + CA264_10355 0.14 -0.9 2,407,680 + CA264_10355 0.14 +0.2 2,407,681 - CA264_10355 0.14 +0.8 2,407,683 + CA264_10355 0.15 -0.2 2,407,713 - CA264_10355 0.17 -0.2 2,407,713 - CA264_10355 0.17 -0.3 2,407,800 + CA264_10355 0.22 -0.3 2,407,801 - CA264_10355 0.23 +0.1 2,407,855 - CA264_10355 0.26 +0.5 2,407,875 - CA264_10355 0.28 +0.4 2,407,918 + CA264_10355 0.30 -0.1 2,407,933 + CA264_10355 0.31 +0.8 2,407,934 - CA264_10355 0.32 -1.4 2,407,951 + CA264_10355 0.33 +1.2 2,408,011 + CA264_10355 0.37 +0.3 2,408,013 + CA264_10355 0.37 -0.9 2,408,014 - CA264_10355 0.37 -0.8 2,408,033 + CA264_10355 0.38 +0.4 2,408,054 + CA264_10355 0.40 +0.4 2,408,055 - CA264_10355 0.40 -0.6 2,408,055 - CA264_10355 0.40 +0.5 2,408,082 + CA264_10355 0.42 -0.4 2,408,091 + CA264_10355 0.42 -0.5 2,408,150 - CA264_10355 0.46 -0.7 2,408,164 - CA264_10355 0.47 -0.7 2,408,222 + CA264_10355 0.51 -0.0 2,408,296 - CA264_10355 0.56 -0.9 2,408,309 + CA264_10355 0.57 +0.5 2,408,310 - CA264_10355 0.57 +0.4 2,408,310 - CA264_10355 0.57 -0.2 2,408,330 + CA264_10355 0.58 +0.4 2,408,330 + CA264_10355 0.58 -0.6 2,408,331 - CA264_10355 0.58 -0.5
Or see this region's nucleotide sequence