Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08820 and CA264_08825 are separated by 59 nucleotides CA264_08825 and CA264_08830 are separated by 37 nucleotides CA264_08830 and CA264_08835 are separated by 82 nucleotides
CA264_08820: CA264_08820 - histidine phosphatase family protein, at 2,060,759 to 2,061,388
_08820
CA264_08825: CA264_08825 - thioesterase, at 2,061,448 to 2,061,867
_08825
CA264_08830: CA264_08830 - isochorismate synthase, at 2,061,905 to 2,063,080
_08830
CA264_08835: CA264_08835 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 2,063,163 to 2,064,866
_08835
Position (kb)
2061
2062
2063
2064 Strain fitness (log2 ratio)
-2
-1
0
1 at 2061.084 kb on + strand, within CA264_08820 at 2061.084 kb on + strand, within CA264_08820 at 2061.084 kb on + strand, within CA264_08820 at 2061.085 kb on - strand, within CA264_08820 at 2061.085 kb on - strand, within CA264_08820 at 2061.181 kb on + strand, within CA264_08820 at 2061.181 kb on + strand, within CA264_08820 at 2061.182 kb on - strand, within CA264_08820 at 2061.200 kb on + strand, within CA264_08820 at 2061.201 kb on - strand, within CA264_08820 at 2061.226 kb on - strand, within CA264_08820 at 2061.226 kb on - strand, within CA264_08820 at 2061.233 kb on - strand, within CA264_08820 at 2061.233 kb on - strand, within CA264_08820 at 2061.251 kb on - strand, within CA264_08820 at 2061.251 kb on - strand, within CA264_08820 at 2061.251 kb on - strand, within CA264_08820 at 2061.251 kb on - strand, within CA264_08820 at 2061.252 kb on + strand, within CA264_08820 at 2061.328 kb on + strand at 2061.329 kb on - strand at 2061.341 kb on - strand at 2061.342 kb on + strand at 2061.343 kb on - strand at 2061.369 kb on + strand at 2061.369 kb on + strand at 2061.371 kb on + strand at 2061.372 kb on - strand at 2061.380 kb on - strand at 2061.411 kb on + strand at 2061.411 kb on + strand at 2061.411 kb on + strand at 2061.416 kb on - strand at 2061.421 kb on + strand at 2061.448 kb on - strand at 2061.671 kb on + strand, within CA264_08825 at 2061.866 kb on - strand at 2061.901 kb on + strand at 2061.901 kb on + strand at 2061.901 kb on + strand at 2061.902 kb on - strand at 2061.902 kb on - strand at 2061.929 kb on - strand at 2061.934 kb on - strand at 2063.090 kb on - strand at 2063.103 kb on - strand at 2063.171 kb on - strand at 2063.183 kb on - strand at 2063.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 2,061,084 + CA264_08820 0.52 -0.1 2,061,084 + CA264_08820 0.52 +0.0 2,061,084 + CA264_08820 0.52 -0.5 2,061,085 - CA264_08820 0.52 +1.2 2,061,085 - CA264_08820 0.52 +0.2 2,061,181 + CA264_08820 0.67 -1.0 2,061,181 + CA264_08820 0.67 -1.7 2,061,182 - CA264_08820 0.67 +0.6 2,061,200 + CA264_08820 0.70 -0.1 2,061,201 - CA264_08820 0.70 +0.2 2,061,226 - CA264_08820 0.74 -0.7 2,061,226 - CA264_08820 0.74 -0.5 2,061,233 - CA264_08820 0.75 +0.3 2,061,233 - CA264_08820 0.75 +0.6 2,061,251 - CA264_08820 0.78 +0.1 2,061,251 - CA264_08820 0.78 +0.9 2,061,251 - CA264_08820 0.78 +0.6 2,061,251 - CA264_08820 0.78 +0.5 2,061,252 + CA264_08820 0.78 +0.5 2,061,328 + -0.6 2,061,329 - +0.3 2,061,341 - -0.6 2,061,342 + +0.5 2,061,343 - +0.5 2,061,369 + +0.0 2,061,369 + +0.2 2,061,371 + -0.4 2,061,372 - +0.1 2,061,380 - +0.4 2,061,411 + +0.3 2,061,411 + +0.1 2,061,411 + -1.4 2,061,416 - -0.1 2,061,421 + -0.5 2,061,448 - +0.0 2,061,671 + CA264_08825 0.53 -1.8 2,061,866 - -1.2 2,061,901 + +0.2 2,061,901 + -0.1 2,061,901 + +0.3 2,061,902 - -0.9 2,061,902 - -0.1 2,061,929 - +0.7 2,061,934 - -0.5 2,063,090 - -0.5 2,063,103 - -1.0 2,063,171 - +0.3 2,063,183 - +0.5 2,063,183 - -0.8
Or see this region's nucleotide sequence