Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04670

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04665 and CA264_04670 are separated by 123 nucleotidesCA264_04670 and CA264_04675 are separated by 0 nucleotidesCA264_04675 and CA264_04680 are separated by 184 nucleotides CA264_04665: CA264_04665 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,081,153 to 1,082,160 _04665 CA264_04670: CA264_04670 - hypothetical protein, at 1,082,284 to 1,082,670 _04670 CA264_04675: CA264_04675 - SsrA-binding protein, at 1,082,671 to 1,083,138 _04675 CA264_04680: CA264_04680 - hypothetical protein, at 1,083,323 to 1,084,081 _04680 Position (kb) 1082 1083Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1082.151 kb on - strandat 1082.162 kb on - strandat 1082.162 kb on - strandat 1082.288 kb on + strandat 1082.312 kb on - strandat 1082.315 kb on + strandat 1082.316 kb on - strandat 1082.436 kb on - strand, within CA264_04670at 1082.520 kb on + strand, within CA264_04670at 1082.523 kb on - strand, within CA264_04670at 1082.562 kb on + strand, within CA264_04670at 1082.562 kb on + strand, within CA264_04670at 1082.563 kb on - strand, within CA264_04670at 1082.667 kb on - strandat 1082.668 kb on + strandat 1082.669 kb on - strandat 1082.706 kb on - strandat 1083.136 kb on + strandat 1083.142 kb on + strandat 1083.142 kb on + strandat 1083.143 kb on - strandat 1083.176 kb on + strandat 1083.201 kb on - strandat 1083.224 kb on + strandat 1083.225 kb on - strandat 1083.251 kb on + strandat 1083.259 kb on + strandat 1083.260 kb on - strandat 1083.261 kb on + strandat 1083.261 kb on + strandat 1083.262 kb on - strandat 1083.318 kb on + strandat 1083.318 kb on + strandat 1083.322 kb on + strandat 1083.322 kb on + strandat 1083.322 kb on + strandat 1083.323 kb on - strandat 1083.375 kb on + strandat 1083.424 kb on + strand, within CA264_04680at 1083.487 kb on + strand, within CA264_04680at 1083.487 kb on + strand, within CA264_04680at 1083.487 kb on + strand, within CA264_04680at 1083.488 kb on - strand, within CA264_04680at 1083.488 kb on - strand, within CA264_04680at 1083.506 kb on + strand, within CA264_04680at 1083.507 kb on - strand, within CA264_04680at 1083.510 kb on - strand, within CA264_04680at 1083.565 kb on + strand, within CA264_04680at 1083.605 kb on + strand, within CA264_04680at 1083.606 kb on - strand, within CA264_04680at 1083.633 kb on + strand, within CA264_04680at 1083.640 kb on - strand, within CA264_04680

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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1,082,151 - +1.5
1,082,162 - +0.8
1,082,162 - +0.4
1,082,288 + -0.9
1,082,312 - -0.2
1,082,315 + -0.1
1,082,316 - +0.1
1,082,436 - CA264_04670 0.39 +0.3
1,082,520 + CA264_04670 0.61 -1.4
1,082,523 - CA264_04670 0.62 -0.4
1,082,562 + CA264_04670 0.72 -0.5
1,082,562 + CA264_04670 0.72 +0.0
1,082,563 - CA264_04670 0.72 -1.1
1,082,667 - +0.2
1,082,668 + +0.4
1,082,669 - -0.2
1,082,706 - +0.9
1,083,136 + +0.1
1,083,142 + +0.6
1,083,142 + -0.6
1,083,143 - +1.9
1,083,176 + +0.9
1,083,201 - +0.5
1,083,224 + +0.1
1,083,225 - +1.1
1,083,251 + +0.2
1,083,259 + +0.4
1,083,260 - +0.1
1,083,261 + +0.3
1,083,261 + +1.4
1,083,262 - +0.1
1,083,318 + +0.5
1,083,318 + -2.3
1,083,322 + -2.1
1,083,322 + -0.1
1,083,322 + -1.3
1,083,323 - -0.2
1,083,375 + -2.9
1,083,424 + CA264_04680 0.13 -1.2
1,083,487 + CA264_04680 0.22 -2.8
1,083,487 + CA264_04680 0.22 -2.2
1,083,487 + CA264_04680 0.22 -3.6
1,083,488 - CA264_04680 0.22 -2.5
1,083,488 - CA264_04680 0.22 -1.8
1,083,506 + CA264_04680 0.24 -2.3
1,083,507 - CA264_04680 0.24 -3.1
1,083,510 - CA264_04680 0.25 -3.0
1,083,565 + CA264_04680 0.32 -1.4
1,083,605 + CA264_04680 0.37 -3.2
1,083,606 - CA264_04680 0.37 -2.7
1,083,633 + CA264_04680 0.41 -2.3
1,083,640 - CA264_04680 0.42 -1.9

Or see this region's nucleotide sequence