Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04660

Experiment: m.b. Cephalothin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_04655 and CA264_04660 are separated by 103 nucleotidesCA264_04660 and CA264_04665 are separated by 2 nucleotides CA264_04655: CA264_04655 - cell division protein, at 1,075,612 to 1,076,508 _04655 CA264_04660: CA264_04660 - hypothetical protein, at 1,076,612 to 1,081,150 _04660 CA264_04665: CA264_04665 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,081,153 to 1,082,160 _04665 Position (kb) 1076 1077 1078 1079 1080 1081 1082Strain fitness (log2 ratio) -1 0 1 2 3at 1075.683 kb on + strandat 1075.719 kb on - strand, within CA264_04655at 1075.766 kb on + strand, within CA264_04655at 1075.767 kb on - strand, within CA264_04655at 1075.890 kb on + strand, within CA264_04655at 1075.891 kb on - strand, within CA264_04655at 1075.917 kb on - strand, within CA264_04655at 1076.046 kb on - strand, within CA264_04655at 1076.046 kb on - strand, within CA264_04655at 1076.234 kb on + strand, within CA264_04655at 1076.270 kb on + strand, within CA264_04655at 1076.270 kb on + strand, within CA264_04655at 1076.271 kb on - strand, within CA264_04655at 1076.336 kb on + strand, within CA264_04655at 1076.336 kb on + strand, within CA264_04655at 1076.336 kb on + strand, within CA264_04655at 1076.337 kb on - strand, within CA264_04655at 1076.398 kb on + strand, within CA264_04655at 1076.514 kb on - strandat 1076.514 kb on - strandat 1076.516 kb on - strandat 1076.540 kb on - strandat 1076.542 kb on - strandat 1076.608 kb on + strandat 1076.609 kb on - strandat 1076.614 kb on - strandat 1078.233 kb on - strand, within CA264_04660at 1080.984 kb on - strandat 1081.114 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
remove
1,075,683 + +1.7
1,075,719 - CA264_04655 0.12 +2.0
1,075,766 + CA264_04655 0.17 +1.9
1,075,767 - CA264_04655 0.17 +0.6
1,075,890 + CA264_04655 0.31 +1.8
1,075,891 - CA264_04655 0.31 +2.2
1,075,917 - CA264_04655 0.34 +0.8
1,076,046 - CA264_04655 0.48 +1.4
1,076,046 - CA264_04655 0.48 +1.8
1,076,234 + CA264_04655 0.69 +1.7
1,076,270 + CA264_04655 0.73 -0.3
1,076,270 + CA264_04655 0.73 +2.4
1,076,271 - CA264_04655 0.73 +1.1
1,076,336 + CA264_04655 0.81 +1.9
1,076,336 + CA264_04655 0.81 +2.5
1,076,336 + CA264_04655 0.81 +1.8
1,076,337 - CA264_04655 0.81 +1.6
1,076,398 + CA264_04655 0.88 +2.6
1,076,514 - +2.0
1,076,514 - +3.4
1,076,516 - +1.1
1,076,540 - +0.7
1,076,542 - -0.3
1,076,608 + -1.0
1,076,609 - +0.6
1,076,614 - -0.1
1,078,233 - CA264_04660 0.36 -0.3
1,080,984 - +0.2
1,081,114 + -0.7

Or see this region's nucleotide sequence