Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04280 and CA264_04285 are separated by 77 nucleotides CA264_04285 and CA264_04290 are separated by 202 nucleotides
CA264_04280: CA264_04280 - hypothetical protein, at 988,711 to 989,112
_04280
CA264_04285: CA264_04285 - hypothetical protein, at 989,190 to 989,453
_04285
CA264_04290: CA264_04290 - ABC transporter permease, at 989,656 to 990,741
_04290
Position (kb)
989
990 Strain fitness (log2 ratio)
-1
0
1
2
3 at 988.210 kb on + strand at 988.250 kb on + strand at 988.307 kb on + strand at 988.342 kb on + strand at 988.343 kb on - strand at 988.343 kb on - strand at 988.344 kb on + strand at 988.345 kb on - strand at 988.348 kb on + strand at 988.348 kb on + strand at 988.349 kb on - strand at 988.391 kb on - strand at 988.448 kb on - strand at 988.451 kb on + strand at 988.468 kb on - strand at 988.468 kb on - strand at 988.529 kb on + strand at 988.530 kb on - strand at 988.532 kb on + strand at 988.564 kb on - strand at 988.615 kb on + strand at 988.620 kb on + strand at 988.620 kb on + strand at 988.620 kb on + strand at 988.627 kb on + strand at 988.629 kb on + strand at 988.629 kb on + strand at 988.630 kb on - strand at 988.630 kb on - strand at 988.630 kb on - strand at 988.630 kb on - strand at 988.656 kb on + strand at 988.657 kb on - strand at 988.663 kb on - strand at 988.672 kb on - strand at 988.674 kb on + strand at 988.674 kb on + strand at 988.674 kb on + strand at 988.674 kb on + strand at 988.681 kb on + strand at 988.681 kb on + strand at 988.682 kb on - strand at 988.683 kb on + strand at 988.683 kb on + strand at 988.684 kb on - strand at 988.684 kb on - strand at 988.684 kb on - strand at 988.686 kb on + strand at 988.687 kb on - strand at 988.693 kb on + strand at 988.706 kb on + strand at 988.707 kb on - strand at 988.707 kb on - strand at 988.711 kb on - strand at 988.842 kb on + strand, within CA264_04280 at 989.090 kb on - strand at 989.110 kb on + strand at 989.152 kb on + strand at 989.161 kb on - strand at 989.172 kb on + strand at 989.172 kb on + strand at 989.182 kb on - strand at 989.191 kb on + strand at 989.191 kb on + strand at 989.191 kb on + strand at 989.192 kb on - strand at 989.211 kb on + strand at 989.212 kb on - strand at 989.213 kb on + strand at 989.213 kb on + strand at 989.213 kb on + strand at 989.217 kb on + strand at 989.227 kb on + strand, within CA264_04285 at 989.336 kb on - strand, within CA264_04285 at 989.371 kb on - strand, within CA264_04285 at 989.388 kb on + strand, within CA264_04285 at 989.447 kb on + strand at 989.447 kb on + strand at 989.479 kb on + strand at 989.493 kb on + strand at 989.495 kb on + strand at 989.612 kb on + strand at 989.612 kb on + strand at 989.612 kb on + strand at 989.612 kb on + strand at 989.654 kb on + strand at 989.707 kb on - strand at 989.707 kb on - strand at 989.707 kb on - strand at 989.809 kb on - strand, within CA264_04290 at 989.821 kb on - strand, within CA264_04290 at 989.835 kb on + strand, within CA264_04290 at 989.886 kb on + strand, within CA264_04290 at 989.886 kb on + strand, within CA264_04290 at 990.127 kb on - strand, within CA264_04290 at 990.283 kb on + strand, within CA264_04290 at 990.308 kb on + strand, within CA264_04290 at 990.309 kb on - strand, within CA264_04290 at 990.320 kb on + strand, within CA264_04290 at 990.329 kb on + strand, within CA264_04290 at 990.330 kb on - strand, within CA264_04290 at 990.405 kb on - strand, within CA264_04290 at 990.439 kb on + strand, within CA264_04290 at 990.439 kb on + strand, within CA264_04290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 988,210 + +0.8 988,250 + +0.8 988,307 + +1.2 988,342 + +0.9 988,343 - -0.4 988,343 - -0.6 988,344 + +2.2 988,345 - +0.6 988,348 + +2.0 988,348 + +0.4 988,349 - +0.1 988,391 - -1.4 988,448 - +0.5 988,451 + +1.9 988,468 - -0.2 988,468 - -0.3 988,529 + +1.2 988,530 - -0.6 988,532 + +1.0 988,564 - +0.9 988,615 + +0.9 988,620 + +2.1 988,620 + +1.0 988,620 + +0.7 988,627 + +1.2 988,629 + +1.2 988,629 + +0.9 988,630 - -0.3 988,630 - -0.4 988,630 - +1.0 988,630 - -0.6 988,656 + +1.1 988,657 - +0.1 988,663 - -1.1 988,672 - +0.1 988,674 + +1.8 988,674 + +2.5 988,674 + +1.4 988,674 + +1.3 988,681 + +1.2 988,681 + +1.1 988,682 - +0.1 988,683 + +0.9 988,683 + +0.5 988,684 - -0.6 988,684 - +0.1 988,684 - -0.6 988,686 + +2.5 988,687 - +0.1 988,693 + +1.2 988,706 + +0.1 988,707 - -0.2 988,707 - +0.0 988,711 - -0.2 988,842 + CA264_04280 0.33 +1.3 989,090 - +1.9 989,110 + +2.9 989,152 + +0.9 989,161 - +0.7 989,172 + +1.4 989,172 + +2.0 989,182 - +0.2 989,191 + +0.7 989,191 + +1.3 989,191 + +0.8 989,192 - +0.4 989,211 + +0.6 989,212 - +2.2 989,213 + +2.0 989,213 + +2.5 989,213 + +1.7 989,217 + +1.9 989,227 + CA264_04285 0.14 +1.4 989,336 - CA264_04285 0.55 +2.0 989,371 - CA264_04285 0.69 +3.0 989,388 + CA264_04285 0.75 +1.2 989,447 + +1.4 989,447 + +1.5 989,479 + +1.7 989,493 + +1.2 989,495 + +2.2 989,612 + +1.2 989,612 + +0.0 989,612 + +0.8 989,612 + +1.5 989,654 + +2.4 989,707 - +1.0 989,707 - +1.2 989,707 - +0.9 989,809 - CA264_04290 0.14 +0.8 989,821 - CA264_04290 0.15 +1.5 989,835 + CA264_04290 0.16 +1.3 989,886 + CA264_04290 0.21 +1.1 989,886 + CA264_04290 0.21 +1.2 990,127 - CA264_04290 0.43 +1.4 990,283 + CA264_04290 0.58 +1.0 990,308 + CA264_04290 0.60 +1.5 990,309 - CA264_04290 0.60 +0.8 990,320 + CA264_04290 0.61 +1.2 990,329 + CA264_04290 0.62 +1.0 990,330 - CA264_04290 0.62 +1.1 990,405 - CA264_04290 0.69 +1.2 990,439 + CA264_04290 0.72 +1.9 990,439 + CA264_04290 0.72 +0.8
Or see this region's nucleotide sequence