Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03630

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03625 and CA264_03630 are separated by 387 nucleotidesCA264_03630 and CA264_03635 are separated by 212 nucleotidesCA264_03635 and CA264_03640 are separated by 195 nucleotides CA264_03625: CA264_03625 - proline iminopeptidase, at 844,594 to 845,655 _03625 CA264_03630: CA264_03630 - PAS domain-containing sensor histidine kinase, at 846,043 to 848,001 _03630 CA264_03635: CA264_03635 - DoxX family protein, at 848,214 to 848,666 _03635 CA264_03640: CA264_03640 - TetR family transcriptional regulator, at 848,862 to 849,434 _03640 Position (kb) 846 847 848 849Strain fitness (log2 ratio) -2 -1 0 1 2at 845.099 kb on + strand, within CA264_03625at 845.161 kb on + strand, within CA264_03625at 845.162 kb on - strand, within CA264_03625at 845.168 kb on + strand, within CA264_03625at 845.182 kb on + strand, within CA264_03625at 845.313 kb on - strand, within CA264_03625at 845.333 kb on + strand, within CA264_03625at 845.334 kb on - strand, within CA264_03625at 845.340 kb on - strand, within CA264_03625at 845.340 kb on - strand, within CA264_03625at 845.340 kb on - strand, within CA264_03625at 845.342 kb on + strand, within CA264_03625at 845.343 kb on - strand, within CA264_03625at 845.366 kb on + strand, within CA264_03625at 845.417 kb on - strand, within CA264_03625at 845.437 kb on - strand, within CA264_03625at 845.633 kb on - strandat 845.647 kb on + strandat 845.647 kb on + strandat 845.692 kb on - strandat 845.695 kb on + strandat 845.696 kb on - strandat 845.699 kb on + strandat 845.702 kb on - strandat 845.728 kb on + strandat 845.846 kb on - strandat 845.846 kb on - strandat 845.846 kb on - strandat 845.846 kb on - strandat 845.846 kb on - strandat 845.863 kb on + strandat 845.940 kb on - strandat 845.959 kb on - strandat 845.959 kb on - strandat 845.978 kb on + strandat 845.982 kb on + strandat 845.983 kb on - strandat 845.992 kb on - strandat 846.028 kb on - strandat 846.042 kb on + strandat 846.043 kb on - strandat 846.051 kb on - strandat 846.073 kb on + strandat 846.114 kb on - strandat 846.114 kb on - strandat 846.133 kb on + strandat 846.134 kb on - strandat 846.138 kb on + strandat 846.247 kb on + strand, within CA264_03630at 846.247 kb on + strand, within CA264_03630at 846.247 kb on + strand, within CA264_03630at 846.247 kb on + strand, within CA264_03630at 846.248 kb on - strand, within CA264_03630at 846.248 kb on - strand, within CA264_03630at 846.388 kb on + strand, within CA264_03630at 846.388 kb on + strand, within CA264_03630at 846.389 kb on - strand, within CA264_03630at 846.429 kb on - strand, within CA264_03630at 846.538 kb on + strand, within CA264_03630at 846.538 kb on + strand, within CA264_03630at 846.538 kb on + strand, within CA264_03630at 846.543 kb on + strand, within CA264_03630at 846.544 kb on - strand, within CA264_03630at 846.549 kb on + strand, within CA264_03630at 846.550 kb on - strand, within CA264_03630at 846.637 kb on + strand, within CA264_03630at 846.638 kb on - strand, within CA264_03630at 846.653 kb on - strand, within CA264_03630at 846.655 kb on - strand, within CA264_03630at 846.793 kb on + strand, within CA264_03630at 846.816 kb on - strand, within CA264_03630at 846.816 kb on - strand, within CA264_03630at 846.927 kb on - strand, within CA264_03630at 846.943 kb on + strand, within CA264_03630at 846.943 kb on + strand, within CA264_03630at 846.943 kb on + strand, within CA264_03630at 846.943 kb on + strand, within CA264_03630at 846.944 kb on - strand, within CA264_03630at 846.944 kb on - strand, within CA264_03630at 846.944 kb on - strand, within CA264_03630at 846.944 kb on - strand, within CA264_03630at 846.944 kb on - strand, within CA264_03630at 847.050 kb on + strand, within CA264_03630at 847.093 kb on + strand, within CA264_03630at 847.198 kb on + strand, within CA264_03630at 847.199 kb on - strand, within CA264_03630at 847.506 kb on + strand, within CA264_03630at 847.726 kb on - strand, within CA264_03630at 847.734 kb on - strand, within CA264_03630at 847.746 kb on + strand, within CA264_03630at 847.746 kb on + strand, within CA264_03630at 847.763 kb on - strand, within CA264_03630at 847.763 kb on - strand, within CA264_03630at 847.834 kb on - strandat 847.854 kb on - strandat 847.914 kb on + strandat 847.915 kb on - strandat 847.918 kb on - strandat 847.918 kb on - strandat 847.929 kb on + strandat 847.960 kb on + strandat 847.961 kb on - strandat 847.961 kb on - strandat 848.089 kb on - strandat 848.105 kb on + strandat 848.128 kb on + strandat 848.147 kb on - strandat 848.150 kb on + strandat 848.150 kb on + strandat 848.151 kb on - strandat 848.198 kb on - strandat 848.282 kb on + strand, within CA264_03635at 848.438 kb on + strand, within CA264_03635at 848.552 kb on + strand, within CA264_03635at 848.552 kb on + strand, within CA264_03635at 848.553 kb on - strand, within CA264_03635at 848.553 kb on - strand, within CA264_03635at 848.553 kb on - strand, within CA264_03635at 848.553 kb on - strand, within CA264_03635at 848.562 kb on + strand, within CA264_03635at 848.562 kb on + strand, within CA264_03635at 848.692 kb on - strandat 848.695 kb on + strandat 848.696 kb on - strandat 848.696 kb on - strandat 848.696 kb on - strandat 848.699 kb on + strandat 848.700 kb on - strandat 848.700 kb on - strandat 848.700 kb on - strandat 848.700 kb on - strandat 848.707 kb on + strandat 848.707 kb on + strandat 848.809 kb on + strandat 848.810 kb on - strandat 848.810 kb on - strandat 848.818 kb on - strandat 848.939 kb on + strand, within CA264_03640at 848.939 kb on + strand, within CA264_03640at 848.940 kb on - strand, within CA264_03640at 848.940 kb on - strand, within CA264_03640

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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845,099 + CA264_03625 0.48 +0.0
845,161 + CA264_03625 0.53 +0.6
845,162 - CA264_03625 0.53 -1.3
845,168 + CA264_03625 0.54 +1.6
845,182 + CA264_03625 0.55 +1.0
845,313 - CA264_03625 0.68 +1.1
845,333 + CA264_03625 0.70 +0.4
845,334 - CA264_03625 0.70 +1.5
845,340 - CA264_03625 0.70 -0.6
845,340 - CA264_03625 0.70 -0.5
845,340 - CA264_03625 0.70 +1.0
845,342 + CA264_03625 0.70 +0.7
845,343 - CA264_03625 0.71 -0.3
845,366 + CA264_03625 0.73 +0.6
845,417 - CA264_03625 0.77 -0.4
845,437 - CA264_03625 0.79 -0.1
845,633 - -0.7
845,647 + +1.5
845,647 + +0.5
845,692 - +0.5
845,695 + +1.3
845,696 - +1.3
845,699 + +1.3
845,702 - -1.8
845,728 + +0.0
845,846 - -0.3
845,846 - -0.8
845,846 - -0.3
845,846 - -0.5
845,846 - +0.5
845,863 + +0.3
845,940 - -1.4
845,959 - -0.5
845,959 - +1.0
845,978 + -0.0
845,982 + +0.8
845,983 - -0.2
845,992 - +0.5
846,028 - +0.7
846,042 + +0.8
846,043 - -1.2
846,051 - +0.7
846,073 + +1.2
846,114 - +0.1
846,114 - -0.6
846,133 + +0.4
846,134 - +0.5
846,138 + +0.5
846,247 + CA264_03630 0.10 +0.7
846,247 + CA264_03630 0.10 +0.9
846,247 + CA264_03630 0.10 +1.4
846,247 + CA264_03630 0.10 +1.1
846,248 - CA264_03630 0.10 +0.1
846,248 - CA264_03630 0.10 -0.1
846,388 + CA264_03630 0.18 +1.1
846,388 + CA264_03630 0.18 +0.3
846,389 - CA264_03630 0.18 +0.6
846,429 - CA264_03630 0.20 -0.4
846,538 + CA264_03630 0.25 +0.8
846,538 + CA264_03630 0.25 +0.7
846,538 + CA264_03630 0.25 +1.4
846,543 + CA264_03630 0.26 +0.9
846,544 - CA264_03630 0.26 -0.7
846,549 + CA264_03630 0.26 +1.0
846,550 - CA264_03630 0.26 +0.7
846,637 + CA264_03630 0.30 +1.0
846,638 - CA264_03630 0.30 +0.7
846,653 - CA264_03630 0.31 -0.4
846,655 - CA264_03630 0.31 -0.5
846,793 + CA264_03630 0.38 +0.3
846,816 - CA264_03630 0.39 +0.4
846,816 - CA264_03630 0.39 +1.1
846,927 - CA264_03630 0.45 +1.1
846,943 + CA264_03630 0.46 +0.7
846,943 + CA264_03630 0.46 +0.4
846,943 + CA264_03630 0.46 +1.7
846,943 + CA264_03630 0.46 +1.8
846,944 - CA264_03630 0.46 -0.3
846,944 - CA264_03630 0.46 +0.9
846,944 - CA264_03630 0.46 -0.3
846,944 - CA264_03630 0.46 -0.4
846,944 - CA264_03630 0.46 +0.2
847,050 + CA264_03630 0.51 -0.3
847,093 + CA264_03630 0.54 +2.1
847,198 + CA264_03630 0.59 +1.7
847,199 - CA264_03630 0.59 -0.2
847,506 + CA264_03630 0.75 +1.2
847,726 - CA264_03630 0.86 +0.4
847,734 - CA264_03630 0.86 +0.9
847,746 + CA264_03630 0.87 +1.8
847,746 + CA264_03630 0.87 +1.5
847,763 - CA264_03630 0.88 +0.2
847,763 - CA264_03630 0.88 +0.6
847,834 - +0.2
847,854 - +0.5
847,914 + +1.6
847,915 - +1.0
847,918 - +0.9
847,918 - +1.8
847,929 + +1.9
847,960 + +0.5
847,961 - +1.7
847,961 - -0.5
848,089 - +2.4
848,105 + +1.4
848,128 + +2.5
848,147 - +0.5
848,150 + +1.4
848,150 + +0.9
848,151 - +1.6
848,198 - +1.4
848,282 + CA264_03635 0.15 +1.1
848,438 + CA264_03635 0.49 +0.7
848,552 + CA264_03635 0.75 -0.1
848,552 + CA264_03635 0.75 +0.9
848,553 - CA264_03635 0.75 +2.3
848,553 - CA264_03635 0.75 +2.2
848,553 - CA264_03635 0.75 +2.4
848,553 - CA264_03635 0.75 +2.1
848,562 + CA264_03635 0.77 -0.4
848,562 + CA264_03635 0.77 +0.4
848,692 - +2.3
848,695 + +0.3
848,696 - +1.7
848,696 - +2.0
848,696 - +2.4
848,699 + +0.1
848,700 - +1.6
848,700 - +0.9
848,700 - +1.8
848,700 - +2.0
848,707 + +1.4
848,707 + +0.4
848,809 + +1.3
848,810 - +1.6
848,810 - +1.9
848,818 - +1.4
848,939 + CA264_03640 0.13 -0.2
848,939 + CA264_03640 0.13 -1.3
848,940 - CA264_03640 0.14 +2.0
848,940 - CA264_03640 0.14 +2.0

Or see this region's nucleotide sequence