Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01805 and CA264_01810 are separated by 86 nucleotides CA264_01810 and CA264_01815 are separated by 16 nucleotides CA264_01815 and CA264_01820 are separated by 2 nucleotides
CA264_01805: CA264_01805 - 6-phosphogluconate dehydrogenase (decarboxylating), at 425,299 to 426,198
_01805
CA264_01810: CA264_01810 - hypothetical protein, at 426,285 to 426,956
_01810
CA264_01815: CA264_01815 - N-acetyltransferase, at 426,973 to 427,254
_01815
CA264_01820: CA264_01820 - hypothetical protein, at 427,257 to 427,988
_01820
Position (kb) 426
427 Strain fitness (log2 ratio) -2
-1
0
1
2 at 425.336 kb on - strand at 425.478 kb on + strand, within CA264_01805 at 425.550 kb on - strand, within CA264_01805 at 425.833 kb on + strand, within CA264_01805 at 425.878 kb on - strand, within CA264_01805 at 426.126 kb on + strand at 426.126 kb on + strand at 426.127 kb on - strand at 426.236 kb on + strand at 426.236 kb on + strand at 426.240 kb on + strand at 426.262 kb on + strand at 426.263 kb on - strand at 426.281 kb on + strand at 426.281 kb on + strand at 426.287 kb on - strand at 426.287 kb on - strand at 426.295 kb on + strand at 426.296 kb on - strand at 426.307 kb on - strand at 426.380 kb on + strand, within CA264_01810 at 426.396 kb on + strand, within CA264_01810 at 426.420 kb on + strand, within CA264_01810 at 426.432 kb on - strand, within CA264_01810 at 426.495 kb on + strand, within CA264_01810 at 426.496 kb on - strand, within CA264_01810 at 426.496 kb on - strand, within CA264_01810 at 426.599 kb on - strand, within CA264_01810 at 426.599 kb on - strand, within CA264_01810 at 426.602 kb on - strand, within CA264_01810 at 426.602 kb on - strand, within CA264_01810 at 426.772 kb on - strand, within CA264_01810 at 426.943 kb on - strand at 426.943 kb on - strand at 426.943 kb on - strand at 426.945 kb on - strand at 426.967 kb on - strand at 426.968 kb on + strand at 426.969 kb on - strand at 426.993 kb on - strand at 427.049 kb on + strand, within CA264_01815 at 427.050 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815 at 427.274 kb on - strand at 427.274 kb on - strand at 427.351 kb on + strand, within CA264_01820 at 427.351 kb on + strand, within CA264_01820 at 427.366 kb on - strand, within CA264_01820 at 427.467 kb on - strand, within CA264_01820 at 427.474 kb on + strand, within CA264_01820 at 427.532 kb on + strand, within CA264_01820 at 427.532 kb on + strand, within CA264_01820 at 427.689 kb on + strand, within CA264_01820 at 427.689 kb on + strand, within CA264_01820 at 427.690 kb on - strand, within CA264_01820 at 427.690 kb on - strand, within CA264_01820 at 427.723 kb on + strand, within CA264_01820 at 427.814 kb on + strand, within CA264_01820 at 427.899 kb on - strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 425,336 - -1.8 425,478 + CA264_01805 0.20 -1.8 425,550 - CA264_01805 0.28 -1.4 425,833 + CA264_01805 0.59 +0.9 425,878 - CA264_01805 0.64 -1.3 426,126 + -0.8 426,126 + -0.7 426,127 - -0.4 426,236 + +0.1 426,236 + -0.2 426,240 + +0.1 426,262 + +1.4 426,263 - +2.0 426,281 + -0.2 426,281 + +0.8 426,287 - -0.4 426,287 - -0.1 426,295 + -0.4 426,296 - -0.4 426,307 - -0.5 426,380 + CA264_01810 0.14 +1.3 426,396 + CA264_01810 0.17 -0.2 426,420 + CA264_01810 0.20 +0.9 426,432 - CA264_01810 0.22 -1.0 426,495 + CA264_01810 0.31 -0.2 426,496 - CA264_01810 0.31 +1.4 426,496 - CA264_01810 0.31 +0.8 426,599 - CA264_01810 0.47 -0.2 426,599 - CA264_01810 0.47 +0.1 426,602 - CA264_01810 0.47 -0.1 426,602 - CA264_01810 0.47 -0.3 426,772 - CA264_01810 0.72 +0.7 426,943 - -0.5 426,943 - +0.5 426,943 - -0.8 426,945 - -0.7 426,967 - +0.6 426,968 + -1.2 426,969 - +0.6 426,993 - -0.1 427,049 + CA264_01815 0.27 +0.3 427,050 - CA264_01815 0.27 +0.5 427,131 - CA264_01815 0.56 -1.8 427,131 - CA264_01815 0.56 -1.1 427,131 - CA264_01815 0.56 -1.1 427,274 - -1.6 427,274 - +1.2 427,351 + CA264_01820 0.13 +1.6 427,351 + CA264_01820 0.13 +0.1 427,366 - CA264_01820 0.15 -1.2 427,467 - CA264_01820 0.29 -1.6 427,474 + CA264_01820 0.30 +1.3 427,532 + CA264_01820 0.38 +0.4 427,532 + CA264_01820 0.38 +0.8 427,689 + CA264_01820 0.59 +1.6 427,689 + CA264_01820 0.59 +0.6 427,690 - CA264_01820 0.59 -0.3 427,690 - CA264_01820 0.59 -1.7 427,723 + CA264_01820 0.64 +1.0 427,814 + CA264_01820 0.76 +0.8 427,899 - CA264_01820 0.88 +2.4 427,900 + CA264_01820 0.88 +0.0 427,900 + CA264_01820 0.88 -0.7 427,900 + CA264_01820 0.88 +2.6 427,900 + CA264_01820 0.88 +1.0 427,942 - -0.3
Or see this region's nucleotide sequence