Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01095 and CA264_01100 are separated by 244 nucleotides CA264_01100 and CA264_01105 are separated by 18 nucleotides CA264_01105 and CA264_01110 are separated by 228 nucleotides
CA264_01095: CA264_01095 - S9 family peptidase, at 239,599 to 241,761
_01095
CA264_01100: CA264_01100 - Clp protease ClpS, at 242,006 to 242,293
_01100
CA264_01105: CA264_01105 - recombination protein RecR, at 242,312 to 242,920
_01105
CA264_01110: CA264_01110 - hypothetical protein, at 243,149 to 245,215
_01110
Position (kb) 242
243 Strain fitness (log2 ratio) -1
0
1
2
3 at 241.050 kb on + strand, within CA264_01095 at 241.050 kb on + strand, within CA264_01095 at 241.051 kb on - strand, within CA264_01095 at 241.127 kb on + strand, within CA264_01095 at 241.128 kb on - strand, within CA264_01095 at 241.128 kb on - strand, within CA264_01095 at 241.208 kb on + strand, within CA264_01095 at 241.326 kb on + strand, within CA264_01095 at 241.327 kb on - strand, within CA264_01095 at 241.346 kb on + strand, within CA264_01095 at 241.346 kb on + strand, within CA264_01095 at 241.465 kb on - strand, within CA264_01095 at 241.583 kb on + strand at 241.583 kb on + strand at 241.714 kb on + strand at 241.714 kb on + strand at 241.715 kb on - strand at 241.762 kb on - strand at 241.773 kb on - strand at 241.775 kb on - strand at 241.775 kb on - strand at 241.813 kb on - strand at 241.814 kb on + strand at 241.869 kb on - strand at 241.878 kb on + strand at 241.898 kb on + strand at 241.899 kb on - strand at 241.900 kb on + strand at 241.901 kb on - strand at 241.901 kb on - strand at 241.925 kb on + strand at 241.925 kb on + strand at 241.927 kb on + strand at 241.928 kb on - strand at 241.954 kb on + strand at 241.954 kb on + strand at 241.954 kb on + strand at 241.955 kb on - strand at 241.955 kb on - strand at 241.955 kb on - strand at 241.956 kb on + strand at 241.957 kb on - strand at 241.967 kb on + strand at 241.968 kb on - strand at 241.968 kb on - strand at 241.968 kb on - strand at 242.003 kb on - strand at 242.023 kb on + strand at 242.023 kb on + strand at 242.093 kb on + strand, within CA264_01100 at 242.095 kb on + strand, within CA264_01100 at 242.125 kb on - strand, within CA264_01100 at 242.125 kb on - strand, within CA264_01100 at 242.125 kb on - strand, within CA264_01100 at 242.145 kb on + strand, within CA264_01100 at 242.145 kb on + strand, within CA264_01100 at 242.146 kb on - strand, within CA264_01100 at 242.179 kb on + strand, within CA264_01100 at 242.210 kb on - strand, within CA264_01100 at 242.214 kb on + strand, within CA264_01100 at 242.229 kb on - strand, within CA264_01100 at 242.246 kb on - strand, within CA264_01100 at 242.285 kb on - strand at 242.286 kb on + strand at 242.287 kb on - strand at 242.291 kb on + strand at 242.292 kb on - strand at 242.292 kb on - strand at 242.305 kb on - strand at 242.305 kb on - strand at 242.612 kb on + strand, within CA264_01105 at 242.624 kb on + strand, within CA264_01105 at 242.664 kb on + strand, within CA264_01105 at 242.665 kb on - strand, within CA264_01105 at 242.665 kb on - strand, within CA264_01105 at 242.736 kb on + strand, within CA264_01105 at 242.938 kb on + strand at 243.072 kb on - strand at 243.149 kb on - strand at 243.184 kb on + strand at 243.184 kb on + strand at 243.184 kb on + strand at 243.184 kb on + strand at 243.185 kb on - strand at 243.185 kb on - strand at 243.213 kb on + strand at 243.214 kb on - strand at 243.234 kb on + strand at 243.234 kb on + strand at 243.235 kb on - strand at 243.239 kb on - strand at 243.254 kb on + strand at 243.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 241,050 + CA264_01095 0.67 -1.1 241,050 + CA264_01095 0.67 -0.3 241,051 - CA264_01095 0.67 -0.1 241,127 + CA264_01095 0.71 +0.1 241,128 - CA264_01095 0.71 -0.1 241,128 - CA264_01095 0.71 +1.7 241,208 + CA264_01095 0.74 -0.6 241,326 + CA264_01095 0.80 +0.4 241,327 - CA264_01095 0.80 +0.6 241,346 + CA264_01095 0.81 +0.1 241,346 + CA264_01095 0.81 +0.7 241,465 - CA264_01095 0.86 -0.6 241,583 + +0.3 241,583 + -0.7 241,714 + +0.4 241,714 + +0.3 241,715 - -1.0 241,762 - +0.3 241,773 - -0.1 241,775 - -0.9 241,775 - +0.3 241,813 - +0.3 241,814 + -0.0 241,869 - +0.2 241,878 + +1.7 241,898 + +2.1 241,899 - +1.4 241,900 + -0.3 241,901 - -0.7 241,901 - +0.2 241,925 + +1.2 241,925 + +0.3 241,927 + +0.2 241,928 - +0.8 241,954 + +0.0 241,954 + +1.7 241,954 + -0.3 241,955 - +1.8 241,955 - -1.4 241,955 - -1.1 241,956 + -0.6 241,957 - -0.3 241,967 + +1.2 241,968 - +0.4 241,968 - +0.5 241,968 - -0.7 242,003 - +1.4 242,023 + +0.7 242,023 + +0.1 242,093 + CA264_01100 0.30 -1.1 242,095 + CA264_01100 0.31 +0.3 242,125 - CA264_01100 0.41 +0.5 242,125 - CA264_01100 0.41 +1.0 242,125 - CA264_01100 0.41 -0.1 242,145 + CA264_01100 0.48 +1.7 242,145 + CA264_01100 0.48 -0.1 242,146 - CA264_01100 0.49 -0.0 242,179 + CA264_01100 0.60 +0.4 242,210 - CA264_01100 0.71 -0.4 242,214 + CA264_01100 0.72 +0.5 242,229 - CA264_01100 0.77 -0.8 242,246 - CA264_01100 0.83 +3.4 242,285 - +0.3 242,286 + +1.5 242,287 - -1.0 242,291 + -0.3 242,292 - -0.3 242,292 - -1.5 242,305 - -0.6 242,305 - -0.2 242,612 + CA264_01105 0.49 +1.1 242,624 + CA264_01105 0.51 +0.3 242,664 + CA264_01105 0.58 +0.4 242,665 - CA264_01105 0.58 -0.4 242,665 - CA264_01105 0.58 +0.5 242,736 + CA264_01105 0.70 +2.2 242,938 + +0.2 243,072 - +0.2 243,149 - -0.0 243,184 + +0.7 243,184 + +1.3 243,184 + +0.2 243,184 + -0.5 243,185 - -0.3 243,185 - -0.4 243,213 + +0.5 243,214 - +1.4 243,234 + +0.3 243,234 + +0.2 243,235 - +0.4 243,239 - +0.3 243,254 + -0.1 243,257 - +0.0
Or see this region's nucleotide sequence