Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00030

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00025 and CA264_00030 are separated by 15 nucleotidesCA264_00030 and CA264_00035 are separated by 59 nucleotidesCA264_00035 and CA264_00040 are separated by 428 nucleotides CA264_00025: CA264_00025 - RIP metalloprotease RseP, at 5,599 to 6,912 _00025 CA264_00030: CA264_00030 - peptidoglycan-binding protein, at 6,928 to 8,055 _00030 CA264_00035: CA264_00035 - hypothetical protein, at 8,115 to 8,621 _00035 CA264_00040: CA264_00040 - hypothetical protein, at 9,050 to 11,023 _00040 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6.011 kb on - strand, within CA264_00025at 6.149 kb on - strand, within CA264_00025at 6.149 kb on - strand, within CA264_00025at 6.436 kb on - strand, within CA264_00025at 6.443 kb on + strand, within CA264_00025at 6.893 kb on + strandat 6.910 kb on + strandat 6.910 kb on + strandat 6.954 kb on - strandat 7.086 kb on + strand, within CA264_00030at 7.090 kb on + strand, within CA264_00030at 7.090 kb on + strand, within CA264_00030at 7.090 kb on + strand, within CA264_00030at 7.090 kb on + strand, within CA264_00030at 7.090 kb on + strand, within CA264_00030at 7.091 kb on - strand, within CA264_00030at 7.091 kb on - strand, within CA264_00030at 7.093 kb on + strand, within CA264_00030at 7.093 kb on + strand, within CA264_00030at 7.146 kb on + strand, within CA264_00030at 7.146 kb on + strand, within CA264_00030at 7.178 kb on - strand, within CA264_00030at 7.352 kb on - strand, within CA264_00030at 7.397 kb on + strand, within CA264_00030at 7.397 kb on + strand, within CA264_00030at 7.398 kb on - strand, within CA264_00030at 7.399 kb on + strand, within CA264_00030at 7.400 kb on - strand, within CA264_00030at 7.400 kb on - strand, within CA264_00030at 7.400 kb on - strand, within CA264_00030at 7.400 kb on - strand, within CA264_00030at 7.437 kb on + strand, within CA264_00030at 7.592 kb on - strand, within CA264_00030at 7.599 kb on + strand, within CA264_00030at 7.668 kb on - strand, within CA264_00030at 7.807 kb on + strand, within CA264_00030at 7.811 kb on - strand, within CA264_00030at 7.811 kb on - strand, within CA264_00030at 7.880 kb on - strand, within CA264_00030at 7.903 kb on + strand, within CA264_00030at 7.913 kb on - strand, within CA264_00030at 7.956 kb on - strandat 8.014 kb on - strandat 8.014 kb on - strandat 8.053 kb on + strandat 8.054 kb on - strandat 8.121 kb on + strandat 8.123 kb on + strandat 8.124 kb on - strandat 8.252 kb on + strand, within CA264_00035at 8.417 kb on - strand, within CA264_00035at 8.451 kb on + strand, within CA264_00035at 8.451 kb on + strand, within CA264_00035at 8.451 kb on + strand, within CA264_00035at 8.467 kb on + strand, within CA264_00035at 8.493 kb on + strand, within CA264_00035at 8.493 kb on + strand, within CA264_00035at 8.540 kb on + strand, within CA264_00035at 8.540 kb on + strand, within CA264_00035at 8.549 kb on + strand, within CA264_00035at 8.550 kb on - strand, within CA264_00035at 8.584 kb on + strandat 8.585 kb on - strandat 8.639 kb on + strandat 8.699 kb on - strandat 8.699 kb on - strandat 8.742 kb on + strandat 8.742 kb on + strandat 8.742 kb on + strandat 8.749 kb on - strandat 8.782 kb on + strandat 8.782 kb on + strandat 8.783 kb on - strandat 8.783 kb on - strandat 8.783 kb on - strandat 8.783 kb on - strandat 8.830 kb on - strandat 8.831 kb on + strandat 8.832 kb on - strandat 8.914 kb on + strandat 8.914 kb on + strandat 8.914 kb on + strandat 8.914 kb on + strandat 8.914 kb on + strandat 8.915 kb on - strandat 8.917 kb on + strandat 8.917 kb on + strandat 8.943 kb on - strandat 8.950 kb on - strandat 8.974 kb on + strandat 9.034 kb on + strandat 9.047 kb on + strandat 9.048 kb on - strandat 9.052 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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6,011 - CA264_00025 0.31 -1.0
6,149 - CA264_00025 0.42 -1.0
6,149 - CA264_00025 0.42 -0.6
6,436 - CA264_00025 0.64 -0.1
6,443 + CA264_00025 0.64 -1.4
6,893 + -0.1
6,910 + -0.2
6,910 + -1.3
6,954 - -1.7
7,086 + CA264_00030 0.14 -2.0
7,090 + CA264_00030 0.14 -2.1
7,090 + CA264_00030 0.14 -0.6
7,090 + CA264_00030 0.14 -1.0
7,090 + CA264_00030 0.14 -1.3
7,090 + CA264_00030 0.14 -3.0
7,091 - CA264_00030 0.14 -0.8
7,091 - CA264_00030 0.14 -3.8
7,093 + CA264_00030 0.15 -1.1
7,093 + CA264_00030 0.15 +0.7
7,146 + CA264_00030 0.19 -1.1
7,146 + CA264_00030 0.19 -1.2
7,178 - CA264_00030 0.22 -1.3
7,352 - CA264_00030 0.38 -1.9
7,397 + CA264_00030 0.42 +0.0
7,397 + CA264_00030 0.42 -0.5
7,398 - CA264_00030 0.42 -0.6
7,399 + CA264_00030 0.42 -1.4
7,400 - CA264_00030 0.42 -1.5
7,400 - CA264_00030 0.42 +0.7
7,400 - CA264_00030 0.42 -1.9
7,400 - CA264_00030 0.42 -1.9
7,437 + CA264_00030 0.45 -1.4
7,592 - CA264_00030 0.59 -1.3
7,599 + CA264_00030 0.59 -1.3
7,668 - CA264_00030 0.66 -2.3
7,807 + CA264_00030 0.78 -1.0
7,811 - CA264_00030 0.78 -1.6
7,811 - CA264_00030 0.78 -1.6
7,880 - CA264_00030 0.84 -1.7
7,903 + CA264_00030 0.86 -0.8
7,913 - CA264_00030 0.87 -2.1
7,956 - -0.6
8,014 - -1.0
8,014 - -2.5
8,053 + +0.3
8,054 - -1.0
8,121 + -0.9
8,123 + -1.2
8,124 - -2.2
8,252 + CA264_00035 0.27 -0.7
8,417 - CA264_00035 0.60 -0.8
8,451 + CA264_00035 0.66 -1.6
8,451 + CA264_00035 0.66 -0.1
8,451 + CA264_00035 0.66 -0.4
8,467 + CA264_00035 0.69 -0.3
8,493 + CA264_00035 0.75 -0.6
8,493 + CA264_00035 0.75 -0.2
8,540 + CA264_00035 0.84 -1.0
8,540 + CA264_00035 0.84 +0.7
8,549 + CA264_00035 0.86 +0.1
8,550 - CA264_00035 0.86 -0.6
8,584 + +0.5
8,585 - -2.4
8,639 + +0.9
8,699 - +0.4
8,699 - -0.3
8,742 + +0.6
8,742 + +0.7
8,742 + +0.5
8,749 - -0.6
8,782 + +0.7
8,782 + -0.2
8,783 - +0.9
8,783 - -0.5
8,783 - +0.0
8,783 - +0.7
8,830 - -0.9
8,831 + +0.5
8,832 - +0.0
8,914 + -0.5
8,914 + +0.7
8,914 + +2.1
8,914 + +0.7
8,914 + -0.3
8,915 - +1.1
8,917 + +0.8
8,917 + +1.1
8,943 - -0.9
8,950 - -0.9
8,974 + +0.4
9,034 + +1.9
9,047 + +2.0
9,048 - -0.3
9,052 - +0.6

Or see this region's nucleotide sequence