Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0557

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0556 and Echvi_0557 are separated by 263 nucleotidesEchvi_0557 and Echvi_0558 are separated by 208 nucleotides Echvi_0556: Echvi_0556 - Alpha-L-fucosidase, at 627,746 to 629,080 _0556 Echvi_0557: Echvi_0557 - Molecular chaperone (small heat shock protein), at 629,344 to 629,772 _0557 Echvi_0558: Echvi_0558 - periplasmic serine protease, Do/DeqQ family, at 629,981 to 631,468 _0558 Position (kb) 629 630Strain fitness (log2 ratio) -2 -1 0 1 2 3at 628.400 kb on - strand, within Echvi_0556at 628.517 kb on + strand, within Echvi_0556at 628.578 kb on - strand, within Echvi_0556at 628.600 kb on - strand, within Echvi_0556at 628.606 kb on - strand, within Echvi_0556at 628.698 kb on + strand, within Echvi_0556at 628.699 kb on - strand, within Echvi_0556at 628.699 kb on - strand, within Echvi_0556at 628.742 kb on + strand, within Echvi_0556at 628.743 kb on - strand, within Echvi_0556at 628.743 kb on - strand, within Echvi_0556at 628.743 kb on - strand, within Echvi_0556at 628.819 kb on + strand, within Echvi_0556at 628.819 kb on + strand, within Echvi_0556at 628.819 kb on + strand, within Echvi_0556at 628.819 kb on + strand, within Echvi_0556at 628.819 kb on + strand, within Echvi_0556at 628.819 kb on + strand, within Echvi_0556at 628.819 kb on + strand, within Echvi_0556at 628.820 kb on - strand, within Echvi_0556at 628.820 kb on - strand, within Echvi_0556at 628.820 kb on - strand, within Echvi_0556at 628.820 kb on - strand, within Echvi_0556at 628.820 kb on - strand, within Echvi_0556at 628.833 kb on - strand, within Echvi_0556at 628.839 kb on + strand, within Echvi_0556at 628.897 kb on - strand, within Echvi_0556at 628.967 kb on + strandat 628.967 kb on + strandat 628.991 kb on + strandat 629.088 kb on - strandat 629.099 kb on + strandat 629.172 kb on - strandat 629.172 kb on - strandat 629.292 kb on - strandat 629.340 kb on + strandat 629.340 kb on + strandat 629.343 kb on + strandat 629.344 kb on - strandat 629.344 kb on - strandat 629.359 kb on + strandat 629.359 kb on + strandat 629.359 kb on + strandat 629.360 kb on - strandat 629.388 kb on + strand, within Echvi_0557at 629.388 kb on + strand, within Echvi_0557at 629.388 kb on + strand, within Echvi_0557at 629.488 kb on + strand, within Echvi_0557at 629.488 kb on + strand, within Echvi_0557at 629.546 kb on + strand, within Echvi_0557at 629.546 kb on + strand, within Echvi_0557at 629.546 kb on + strand, within Echvi_0557at 629.547 kb on - strand, within Echvi_0557at 629.547 kb on - strand, within Echvi_0557at 629.553 kb on + strand, within Echvi_0557at 629.727 kb on + strand, within Echvi_0557at 629.727 kb on + strand, within Echvi_0557at 629.728 kb on - strand, within Echvi_0557at 629.728 kb on - strand, within Echvi_0557at 629.728 kb on - strand, within Echvi_0557at 629.728 kb on - strand, within Echvi_0557at 629.770 kb on + strandat 629.778 kb on - strandat 629.881 kb on - strandat 629.894 kb on + strandat 629.937 kb on - strandat 630.027 kb on + strandat 630.028 kb on - strandat 630.028 kb on - strandat 630.055 kb on - strandat 630.085 kb on + strandat 630.085 kb on + strandat 630.086 kb on - strandat 630.106 kb on + strandat 630.127 kb on - strandat 630.187 kb on - strand, within Echvi_0558at 630.215 kb on - strand, within Echvi_0558at 630.275 kb on - strand, within Echvi_0558at 630.340 kb on - strand, within Echvi_0558at 630.353 kb on + strand, within Echvi_0558at 630.354 kb on - strand, within Echvi_0558at 630.354 kb on - strand, within Echvi_0558at 630.378 kb on + strandat 630.378 kb on + strand, within Echvi_0558at 630.396 kb on + strand, within Echvi_0558at 630.397 kb on - strand, within Echvi_0558at 630.411 kb on - strand, within Echvi_0558at 630.425 kb on + strand, within Echvi_0558at 630.426 kb on - strand, within Echvi_0558at 630.426 kb on - strand, within Echvi_0558at 630.433 kb on + strand, within Echvi_0558at 630.434 kb on - strand, within Echvi_0558at 630.438 kb on + strand, within Echvi_0558at 630.454 kb on + strand, within Echvi_0558at 630.455 kb on - strand, within Echvi_0558at 630.474 kb on + strand, within Echvi_0558at 630.504 kb on + strand, within Echvi_0558at 630.555 kb on + strand, within Echvi_0558at 630.574 kb on + strand, within Echvi_0558at 630.718 kb on + strand, within Echvi_0558

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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628,400 - Echvi_0556 0.49 +1.8
628,517 + Echvi_0556 0.58 -0.6
628,578 - Echvi_0556 0.62 -1.7
628,600 - Echvi_0556 0.64 +1.1
628,606 - Echvi_0556 0.64 -0.0
628,698 + Echvi_0556 0.71 -0.1
628,699 - Echvi_0556 0.71 -0.3
628,699 - Echvi_0556 0.71 -0.2
628,742 + Echvi_0556 0.75 -0.4
628,743 - Echvi_0556 0.75 -1.2
628,743 - Echvi_0556 0.75 -0.6
628,743 - Echvi_0556 0.75 -0.4
628,819 + Echvi_0556 0.80 -0.9
628,819 + Echvi_0556 0.80 +0.1
628,819 + Echvi_0556 0.80 -0.1
628,819 + Echvi_0556 0.80 +0.5
628,819 + Echvi_0556 0.80 -0.4
628,819 + Echvi_0556 0.80 +0.0
628,819 + Echvi_0556 0.80 -1.7
628,820 - Echvi_0556 0.80 -0.7
628,820 - Echvi_0556 0.80 +0.2
628,820 - Echvi_0556 0.80 -0.6
628,820 - Echvi_0556 0.80 +0.0
628,820 - Echvi_0556 0.80 -1.6
628,833 - Echvi_0556 0.81 -0.5
628,839 + Echvi_0556 0.82 +0.5
628,897 - Echvi_0556 0.86 +0.2
628,967 + -0.6
628,967 + +0.3
628,991 + -2.7
629,088 - -1.6
629,099 + +0.0
629,172 - -1.9
629,172 - -0.0
629,292 - +1.4
629,340 + -0.8
629,340 + +0.1
629,343 + -0.8
629,344 - +0.1
629,344 - +0.1
629,359 + -0.9
629,359 + +0.4
629,359 + -1.7
629,360 - -0.2
629,388 + Echvi_0557 0.10 +0.5
629,388 + Echvi_0557 0.10 +0.1
629,388 + Echvi_0557 0.10 -0.1
629,488 + Echvi_0557 0.34 -0.2
629,488 + Echvi_0557 0.34 -1.3
629,546 + Echvi_0557 0.47 +1.1
629,546 + Echvi_0557 0.47 +0.1
629,546 + Echvi_0557 0.47 -1.0
629,547 - Echvi_0557 0.47 -1.0
629,547 - Echvi_0557 0.47 -0.6
629,553 + Echvi_0557 0.49 -2.6
629,727 + Echvi_0557 0.89 -0.9
629,727 + Echvi_0557 0.89 -1.3
629,728 - Echvi_0557 0.90 -0.8
629,728 - Echvi_0557 0.90 -1.0
629,728 - Echvi_0557 0.90 -0.1
629,728 - Echvi_0557 0.90 -0.4
629,770 + -0.5
629,778 - +0.4
629,881 - +1.7
629,894 + +0.9
629,937 - -1.6
630,027 + -2.3
630,028 - +0.3
630,028 - +0.3
630,055 - +0.5
630,085 + -0.2
630,085 + -0.0
630,086 - +0.1
630,106 + +0.8
630,127 - +0.9
630,187 - Echvi_0558 0.14 +0.6
630,215 - Echvi_0558 0.16 +1.4
630,275 - Echvi_0558 0.20 -0.4
630,340 - Echvi_0558 0.24 +1.2
630,353 + Echvi_0558 0.25 -1.9
630,354 - Echvi_0558 0.25 +1.4
630,354 - Echvi_0558 0.25 +0.7
630,378 + +3.0
630,378 + Echvi_0558 0.27 -0.4
630,396 + Echvi_0558 0.28 +0.1
630,397 - Echvi_0558 0.28 +0.7
630,411 - Echvi_0558 0.29 +0.4
630,425 + Echvi_0558 0.30 +1.0
630,426 - Echvi_0558 0.30 +0.3
630,426 - Echvi_0558 0.30 -0.7
630,433 + Echvi_0558 0.30 +1.3
630,434 - Echvi_0558 0.30 +0.4
630,438 + Echvi_0558 0.31 -0.0
630,454 + Echvi_0558 0.32 -1.9
630,455 - Echvi_0558 0.32 -0.2
630,474 + Echvi_0558 0.33 -1.0
630,504 + Echvi_0558 0.35 +0.1
630,555 + Echvi_0558 0.39 +0.1
630,574 + Echvi_0558 0.40 -1.4
630,718 + Echvi_0558 0.50 +0.0

Or see this region's nucleotide sequence