Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0399 and Echvi_0400 are separated by 11 nucleotides Echvi_0400 and Echvi_0401 are separated by 80 nucleotides
Echvi_0399: Echvi_0399 - Lysophospholipase L1 and related esterases, at 425,115 to 425,825
_0399
Echvi_0400: Echvi_0400 - hypothetical protein, at 425,837 to 428,392
_0400
Echvi_0401: Echvi_0401 - SusD family., at 428,473 to 429,894
_0401
Position (kb) 425
426
427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 424.843 kb on + strand at 424.862 kb on + strand at 424.862 kb on + strand at 424.862 kb on + strand at 424.862 kb on + strand at 424.862 kb on + strand at 425.012 kb on + strand at 425.041 kb on + strand at 425.041 kb on + strand at 425.051 kb on + strand at 425.051 kb on + strand at 425.186 kb on + strand, within Echvi_0399 at 425.186 kb on + strand, within Echvi_0399 at 425.186 kb on + strand, within Echvi_0399 at 425.186 kb on + strand, within Echvi_0399 at 425.186 kb on + strand, within Echvi_0399 at 425.186 kb on + strand, within Echvi_0399 at 425.186 kb on + strand, within Echvi_0399 at 425.186 kb on + strand, within Echvi_0399 at 425.187 kb on - strand, within Echvi_0399 at 425.187 kb on - strand, within Echvi_0399 at 425.187 kb on - strand, within Echvi_0399 at 425.187 kb on - strand, within Echvi_0399 at 425.188 kb on + strand, within Echvi_0399 at 425.188 kb on + strand, within Echvi_0399 at 425.189 kb on - strand, within Echvi_0399 at 425.195 kb on + strand, within Echvi_0399 at 425.195 kb on + strand, within Echvi_0399 at 425.196 kb on - strand, within Echvi_0399 at 425.196 kb on - strand, within Echvi_0399 at 425.198 kb on + strand, within Echvi_0399 at 425.199 kb on - strand, within Echvi_0399 at 425.199 kb on - strand, within Echvi_0399 at 425.199 kb on - strand, within Echvi_0399 at 425.367 kb on + strand, within Echvi_0399 at 425.367 kb on + strand, within Echvi_0399 at 425.524 kb on + strand, within Echvi_0399 at 425.588 kb on + strand, within Echvi_0399 at 425.589 kb on - strand, within Echvi_0399 at 425.596 kb on - strand, within Echvi_0399 at 425.600 kb on + strand, within Echvi_0399 at 425.601 kb on - strand, within Echvi_0399 at 425.601 kb on - strand, within Echvi_0399 at 425.603 kb on + strand, within Echvi_0399 at 425.608 kb on + strand, within Echvi_0399 at 425.738 kb on - strand, within Echvi_0399 at 425.738 kb on - strand, within Echvi_0399 at 425.747 kb on + strand, within Echvi_0399 at 425.834 kb on + strand at 425.834 kb on + strand at 425.876 kb on + strand at 425.876 kb on + strand at 425.880 kb on + strand at 425.880 kb on + strand at 425.880 kb on + strand at 425.880 kb on + strand at 425.918 kb on + strand at 425.919 kb on - strand at 425.994 kb on + strand at 425.995 kb on - strand at 425.996 kb on + strand at 425.996 kb on + strand at 425.996 kb on + strand at 426.002 kb on + strand at 426.002 kb on + strand at 426.003 kb on - strand at 426.003 kb on - strand at 426.003 kb on - strand at 426.003 kb on - strand at 426.080 kb on + strand at 426.081 kb on - strand at 426.081 kb on - strand at 426.084 kb on - strand at 426.107 kb on + strand, within Echvi_0400 at 426.144 kb on + strand, within Echvi_0400 at 426.144 kb on + strand, within Echvi_0400 at 426.144 kb on + strand, within Echvi_0400 at 426.144 kb on + strand, within Echvi_0400 at 426.144 kb on + strand, within Echvi_0400 at 426.229 kb on + strand, within Echvi_0400 at 426.364 kb on - strand, within Echvi_0400 at 426.451 kb on - strand, within Echvi_0400 at 426.546 kb on + strand, within Echvi_0400 at 426.546 kb on + strand, within Echvi_0400 at 426.547 kb on - strand, within Echvi_0400 at 426.547 kb on - strand, within Echvi_0400 at 426.641 kb on - strand, within Echvi_0400 at 426.652 kb on - strand, within Echvi_0400 at 426.668 kb on - strand, within Echvi_0400 at 426.703 kb on + strand, within Echvi_0400 at 426.708 kb on - strand, within Echvi_0400 at 426.747 kb on + strand, within Echvi_0400 at 426.747 kb on + strand, within Echvi_0400 at 426.747 kb on + strand, within Echvi_0400 at 426.748 kb on - strand, within Echvi_0400 at 426.848 kb on + strand, within Echvi_0400 at 426.901 kb on + strand, within Echvi_0400 at 426.902 kb on - strand, within Echvi_0400 at 426.902 kb on - strand, within Echvi_0400 at 426.954 kb on + strand, within Echvi_0400 at 426.983 kb on - strand, within Echvi_0400 at 426.999 kb on + strand, within Echvi_0400 at 427.014 kb on + strand, within Echvi_0400 at 427.015 kb on - strand, within Echvi_0400 at 427.053 kb on + strand, within Echvi_0400 at 427.054 kb on - strand, within Echvi_0400 at 427.079 kb on + strand, within Echvi_0400 at 427.080 kb on - strand, within Echvi_0400 at 427.105 kb on + strand, within Echvi_0400 at 427.224 kb on + strand, within Echvi_0400 at 427.267 kb on + strand, within Echvi_0400 at 427.268 kb on - strand, within Echvi_0400 at 427.268 kb on - strand, within Echvi_0400 at 427.268 kb on - strand, within Echvi_0400 at 427.268 kb on - strand, within Echvi_0400 at 427.268 kb on - strand, within Echvi_0400 at 427.269 kb on + strand, within Echvi_0400 at 427.269 kb on + strand, within Echvi_0400 at 427.269 kb on + strand, within Echvi_0400 at 427.270 kb on - strand, within Echvi_0400 at 427.270 kb on - strand, within Echvi_0400 at 427.273 kb on - strand, within Echvi_0400 at 427.283 kb on - strand, within Echvi_0400 at 427.283 kb on - strand, within Echvi_0400 at 427.386 kb on - strand, within Echvi_0400 at 427.386 kb on - strand, within Echvi_0400 at 427.404 kb on + strand, within Echvi_0400 at 427.405 kb on - strand, within Echvi_0400 at 427.405 kb on - strand, within Echvi_0400 at 427.580 kb on - strand, within Echvi_0400 at 427.588 kb on + strand, within Echvi_0400 at 427.636 kb on + strand, within Echvi_0400 at 427.638 kb on + strand, within Echvi_0400 at 427.638 kb on + strand, within Echvi_0400 at 427.764 kb on + strand, within Echvi_0400 at 427.764 kb on + strand, within Echvi_0400 at 427.764 kb on + strand, within Echvi_0400 at 427.765 kb on - strand, within Echvi_0400 at 427.769 kb on - strand, within Echvi_0400 at 427.870 kb on + strand, within Echvi_0400 at 427.925 kb on - strand, within Echvi_0400 at 427.939 kb on + strand, within Echvi_0400 at 427.950 kb on + strand, within Echvi_0400 at 427.977 kb on + strand, within Echvi_0400 at 427.978 kb on - strand, within Echvi_0400 at 428.056 kb on - strand, within Echvi_0400 at 428.056 kb on - strand, within Echvi_0400 at 428.056 kb on - strand, within Echvi_0400 at 428.103 kb on - strand, within Echvi_0400 at 428.205 kb on + strand at 428.251 kb on + strand at 428.252 kb on - strand at 428.252 kb on - strand at 428.277 kb on - strand at 428.277 kb on - strand at 428.320 kb on + strand at 428.393 kb on - strand at 428.393 kb on - strand at 428.396 kb on + strand at 428.396 kb on + strand at 428.397 kb on - strand at 428.397 kb on - strand at 428.397 kb on - strand at 428.461 kb on - strand at 428.466 kb on + strand at 428.467 kb on - strand at 428.474 kb on + strand at 428.474 kb on + strand at 428.580 kb on + strand at 428.581 kb on - strand at 428.585 kb on + strand at 428.586 kb on - strand at 428.723 kb on - strand, within Echvi_0401 at 428.749 kb on + strand, within Echvi_0401 at 428.754 kb on - strand, within Echvi_0401 at 428.754 kb on - strand, within Echvi_0401 at 428.801 kb on + strand, within Echvi_0401 at 428.972 kb on + strand, within Echvi_0401 at 429.054 kb on + strand, within Echvi_0401 at 429.068 kb on + strand, within Echvi_0401 at 429.166 kb on + strand, within Echvi_0401 at 429.166 kb on + strand, within Echvi_0401 at 429.176 kb on + strand, within Echvi_0401 at 429.177 kb on - strand, within Echvi_0401 at 429.177 kb on - strand, within Echvi_0401 at 429.243 kb on - strand, within Echvi_0401 at 429.285 kb on - strand, within Echvi_0401
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 424,843 + +0.9 424,862 + -0.9 424,862 + -1.1 424,862 + +1.5 424,862 + +0.6 424,862 + -0.5 425,012 + +0.7 425,041 + +2.0 425,041 + -1.7 425,051 + -1.1 425,051 + -0.3 425,186 + Echvi_0399 0.10 -0.6 425,186 + Echvi_0399 0.10 +0.3 425,186 + Echvi_0399 0.10 -1.1 425,186 + Echvi_0399 0.10 -0.6 425,186 + Echvi_0399 0.10 -2.0 425,186 + Echvi_0399 0.10 +0.3 425,186 + Echvi_0399 0.10 -0.5 425,186 + Echvi_0399 0.10 +1.8 425,187 - Echvi_0399 0.10 +5.3 425,187 - Echvi_0399 0.10 +5.7 425,187 - Echvi_0399 0.10 +6.0 425,187 - Echvi_0399 0.10 +6.4 425,188 + Echvi_0399 0.10 -1.5 425,188 + Echvi_0399 0.10 -0.0 425,189 - Echvi_0399 0.10 +5.2 425,195 + Echvi_0399 0.11 -2.9 425,195 + Echvi_0399 0.11 +0.1 425,196 - Echvi_0399 0.11 +4.7 425,196 - Echvi_0399 0.11 +5.2 425,198 + Echvi_0399 0.12 -0.8 425,199 - Echvi_0399 0.12 +5.3 425,199 - Echvi_0399 0.12 +5.3 425,199 - Echvi_0399 0.12 +5.3 425,367 + Echvi_0399 0.35 -2.8 425,367 + Echvi_0399 0.35 +0.1 425,524 + Echvi_0399 0.58 -0.5 425,588 + Echvi_0399 0.67 +0.3 425,589 - Echvi_0399 0.67 +5.8 425,596 - Echvi_0399 0.68 +5.1 425,600 + Echvi_0399 0.68 -0.7 425,601 - Echvi_0399 0.68 +4.9 425,601 - Echvi_0399 0.68 +5.4 425,603 + Echvi_0399 0.69 -1.1 425,608 + Echvi_0399 0.69 +0.6 425,738 - Echvi_0399 0.88 +2.6 425,738 - Echvi_0399 0.88 +6.1 425,747 + Echvi_0399 0.89 -2.2 425,834 + -0.9 425,834 + -0.1 425,876 + +0.0 425,876 + -1.3 425,880 + +0.1 425,880 + +1.9 425,880 + -2.0 425,880 + -0.4 425,918 + -0.1 425,919 - +6.0 425,994 + -1.7 425,995 - +5.4 425,996 + -0.2 425,996 + -0.9 425,996 + -1.8 426,002 + +1.1 426,002 + +0.7 426,003 - +5.5 426,003 - +5.7 426,003 - +4.9 426,003 - +6.0 426,080 + -1.6 426,081 - +4.8 426,081 - +4.1 426,084 - +5.5 426,107 + Echvi_0400 0.11 -0.6 426,144 + Echvi_0400 0.12 +0.0 426,144 + Echvi_0400 0.12 +0.6 426,144 + Echvi_0400 0.12 +1.1 426,144 + Echvi_0400 0.12 +0.6 426,144 + Echvi_0400 0.12 +1.1 426,229 + Echvi_0400 0.15 +2.3 426,364 - Echvi_0400 0.21 +4.5 426,451 - Echvi_0400 0.24 +4.9 426,546 + Echvi_0400 0.28 +1.7 426,546 + Echvi_0400 0.28 -1.3 426,547 - Echvi_0400 0.28 +6.1 426,547 - Echvi_0400 0.28 +5.7 426,641 - Echvi_0400 0.31 +6.0 426,652 - Echvi_0400 0.32 +5.5 426,668 - Echvi_0400 0.33 +6.0 426,703 + Echvi_0400 0.34 -0.9 426,708 - Echvi_0400 0.34 +4.7 426,747 + Echvi_0400 0.36 +0.3 426,747 + Echvi_0400 0.36 -1.3 426,747 + Echvi_0400 0.36 -0.8 426,748 - Echvi_0400 0.36 +5.1 426,848 + Echvi_0400 0.40 -0.4 426,901 + Echvi_0400 0.42 -0.3 426,902 - Echvi_0400 0.42 +5.1 426,902 - Echvi_0400 0.42 +5.8 426,954 + Echvi_0400 0.44 -1.2 426,983 - Echvi_0400 0.45 +4.9 426,999 + Echvi_0400 0.45 -1.0 427,014 + Echvi_0400 0.46 -0.4 427,015 - Echvi_0400 0.46 +4.5 427,053 + Echvi_0400 0.48 -0.3 427,054 - Echvi_0400 0.48 +4.8 427,079 + Echvi_0400 0.49 -1.8 427,080 - Echvi_0400 0.49 +4.8 427,105 + Echvi_0400 0.50 -0.1 427,224 + Echvi_0400 0.54 -0.1 427,267 + Echvi_0400 0.56 -1.7 427,268 - Echvi_0400 0.56 +4.9 427,268 - Echvi_0400 0.56 +4.3 427,268 - Echvi_0400 0.56 +6.0 427,268 - Echvi_0400 0.56 +4.3 427,268 - Echvi_0400 0.56 +4.8 427,269 + Echvi_0400 0.56 -1.1 427,269 + Echvi_0400 0.56 -0.3 427,269 + Echvi_0400 0.56 -1.9 427,270 - Echvi_0400 0.56 +4.1 427,270 - Echvi_0400 0.56 +4.8 427,273 - Echvi_0400 0.56 +4.1 427,283 - Echvi_0400 0.57 +3.6 427,283 - Echvi_0400 0.57 +3.4 427,386 - Echvi_0400 0.61 +3.7 427,386 - Echvi_0400 0.61 +4.7 427,404 + Echvi_0400 0.61 -1.5 427,405 - Echvi_0400 0.61 +5.7 427,405 - Echvi_0400 0.61 +3.8 427,580 - Echvi_0400 0.68 +1.4 427,588 + Echvi_0400 0.69 +0.5 427,636 + Echvi_0400 0.70 -1.3 427,638 + Echvi_0400 0.70 -1.7 427,638 + Echvi_0400 0.70 -1.1 427,764 + Echvi_0400 0.75 -2.1 427,764 + Echvi_0400 0.75 -1.3 427,764 + Echvi_0400 0.75 -0.1 427,765 - Echvi_0400 0.75 +3.5 427,769 - Echvi_0400 0.76 +1.7 427,870 + Echvi_0400 0.80 +0.5 427,925 - Echvi_0400 0.82 +2.3 427,939 + Echvi_0400 0.82 -1.6 427,950 + Echvi_0400 0.83 -2.4 427,977 + Echvi_0400 0.84 -0.0 427,978 - Echvi_0400 0.84 +2.4 428,056 - Echvi_0400 0.87 +3.2 428,056 - Echvi_0400 0.87 +2.6 428,056 - Echvi_0400 0.87 +3.8 428,103 - Echvi_0400 0.89 +2.8 428,205 + -1.4 428,251 + +0.4 428,252 - +0.3 428,252 - +2.6 428,277 - +3.1 428,277 - +2.5 428,320 + -2.0 428,393 - +4.3 428,393 - +4.0 428,396 + +0.4 428,396 + -1.5 428,397 - +5.0 428,397 - +5.3 428,397 - +4.3 428,461 - +5.5 428,466 + -2.4 428,467 - +5.2 428,474 + -0.6 428,474 + -0.5 428,580 + -1.6 428,581 - +7.0 428,585 + -0.8 428,586 - +5.6 428,723 - Echvi_0401 0.18 +5.9 428,749 + Echvi_0401 0.19 +1.1 428,754 - Echvi_0401 0.20 +5.7 428,754 - Echvi_0401 0.20 +3.9 428,801 + Echvi_0401 0.23 -0.6 428,972 + Echvi_0401 0.35 -0.3 429,054 + Echvi_0401 0.41 -0.5 429,068 + Echvi_0401 0.42 -0.4 429,166 + Echvi_0401 0.49 -1.6 429,166 + Echvi_0401 0.49 +1.1 429,176 + Echvi_0401 0.49 +0.1 429,177 - Echvi_0401 0.50 +5.4 429,177 - Echvi_0401 0.50 +5.1 429,243 - Echvi_0401 0.54 +4.9 429,285 - Echvi_0401 0.57 +5.5
Or see this region's nucleotide sequence