Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0161 and Echvi_0162 are separated by 46 nucleotides Echvi_0162 and Echvi_0163 are separated by 122 nucleotides Echvi_0163 and Echvi_0164 are separated by 78 nucleotides
Echvi_0161: Echvi_0161 - Exopolyphosphatase, at 164,514 to 165,479
_0161
Echvi_0162: Echvi_0162 - Malate/L-lactate dehydrogenases, at 165,526 to 166,602
_0162
Echvi_0163: Echvi_0163 - Predicted redox protein, regulator of disulfide bond formation, at 166,725 to 167,219
_0163
Echvi_0164: Echvi_0164 - Mannose-1-phosphate guanylyltransferase, at 167,298 to 168,368
_0164
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2 at 164.569 kb on + strand at 164.575 kb on + strand at 164.746 kb on - strand, within Echvi_0161 at 164.797 kb on + strand, within Echvi_0161 at 164.868 kb on + strand, within Echvi_0161 at 164.868 kb on + strand, within Echvi_0161 at 165.027 kb on + strand, within Echvi_0161 at 165.088 kb on + strand, within Echvi_0161 at 165.088 kb on + strand, within Echvi_0161 at 165.110 kb on + strand, within Echvi_0161 at 165.110 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.177 kb on + strand, within Echvi_0161 at 165.177 kb on + strand, within Echvi_0161 at 165.178 kb on - strand, within Echvi_0161 at 165.178 kb on - strand, within Echvi_0161 at 165.370 kb on + strand, within Echvi_0161 at 165.370 kb on + strand, within Echvi_0161 at 165.371 kb on - strand, within Echvi_0161 at 165.516 kb on - strand at 165.517 kb on + strand at 166.622 kb on - strand at 166.654 kb on - strand at 166.654 kb on - strand at 166.719 kb on - strand at 166.719 kb on - strand at 166.794 kb on + strand, within Echvi_0163 at 166.795 kb on - strand, within Echvi_0163 at 166.919 kb on + strand, within Echvi_0163 at 166.972 kb on + strand, within Echvi_0163 at 166.972 kb on + strand, within Echvi_0163 at 166.972 kb on + strand, within Echvi_0163 at 166.973 kb on - strand, within Echvi_0163 at 166.973 kb on - strand, within Echvi_0163 at 166.976 kb on + strand, within Echvi_0163 at 166.977 kb on - strand, within Echvi_0163 at 166.986 kb on + strand, within Echvi_0163 at 167.059 kb on - strand, within Echvi_0163 at 167.130 kb on + strand, within Echvi_0163 at 167.130 kb on + strand, within Echvi_0163 at 167.208 kb on + strand at 167.209 kb on - strand at 167.209 kb on - strand at 167.209 kb on - strand at 167.275 kb on + strand at 167.275 kb on + strand at 167.276 kb on - strand at 167.412 kb on - strand, within Echvi_0164 at 167.456 kb on + strand, within Echvi_0164 at 167.456 kb on + strand, within Echvi_0164 at 167.457 kb on - strand, within Echvi_0164 at 167.457 kb on - strand, within Echvi_0164 at 167.457 kb on - strand, within Echvi_0164 at 167.458 kb on + strand, within Echvi_0164 at 167.458 kb on + strand, within Echvi_0164 at 167.458 kb on + strand, within Echvi_0164 at 167.458 kb on + strand, within Echvi_0164 at 167.459 kb on - strand, within Echvi_0164 at 167.459 kb on - strand, within Echvi_0164 at 167.459 kb on - strand, within Echvi_0164 at 167.459 kb on - strand, within Echvi_0164 at 167.462 kb on + strand, within Echvi_0164 at 167.463 kb on - strand, within Echvi_0164 at 167.463 kb on - strand, within Echvi_0164 at 167.468 kb on + strand, within Echvi_0164 at 167.468 kb on + strand, within Echvi_0164 at 167.468 kb on + strand, within Echvi_0164 at 167.469 kb on - strand, within Echvi_0164 at 167.472 kb on - strand, within Echvi_0164 at 167.476 kb on + strand, within Echvi_0164 at 167.504 kb on + strand, within Echvi_0164 at 167.505 kb on - strand, within Echvi_0164 at 167.506 kb on - strand, within Echvi_0164 at 167.537 kb on + strand, within Echvi_0164 at 167.538 kb on - strand, within Echvi_0164 at 167.587 kb on + strand, within Echvi_0164
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 164,569 + -1.1 164,575 + -1.2 164,746 - Echvi_0161 0.24 -2.1 164,797 + Echvi_0161 0.29 +0.5 164,868 + Echvi_0161 0.37 +1.9 164,868 + Echvi_0161 0.37 -0.7 165,027 + Echvi_0161 0.53 -0.9 165,088 + Echvi_0161 0.59 -2.2 165,088 + Echvi_0161 0.59 +0.1 165,110 + Echvi_0161 0.62 +0.3 165,110 + Echvi_0161 0.62 +0.1 165,174 + Echvi_0161 0.68 -1.6 165,174 + Echvi_0161 0.68 -2.2 165,174 + Echvi_0161 0.68 -0.9 165,175 - Echvi_0161 0.68 -2.5 165,175 - Echvi_0161 0.68 -2.5 165,175 - Echvi_0161 0.68 -0.6 165,177 + Echvi_0161 0.69 -0.1 165,177 + Echvi_0161 0.69 -0.9 165,178 - Echvi_0161 0.69 -2.1 165,178 - Echvi_0161 0.69 +0.9 165,370 + Echvi_0161 0.89 -1.6 165,370 + Echvi_0161 0.89 +0.2 165,371 - Echvi_0161 0.89 +0.1 165,516 - +1.9 165,517 + -0.3 166,622 - +1.2 166,654 - +0.3 166,654 - +0.2 166,719 - -1.4 166,719 - -0.7 166,794 + Echvi_0163 0.14 +1.0 166,795 - Echvi_0163 0.14 -0.5 166,919 + Echvi_0163 0.39 +0.9 166,972 + Echvi_0163 0.50 +1.0 166,972 + Echvi_0163 0.50 -0.2 166,972 + Echvi_0163 0.50 +0.3 166,973 - Echvi_0163 0.50 +0.1 166,973 - Echvi_0163 0.50 +1.6 166,976 + Echvi_0163 0.51 +1.3 166,977 - Echvi_0163 0.51 -1.7 166,986 + Echvi_0163 0.53 -0.9 167,059 - Echvi_0163 0.67 -0.1 167,130 + Echvi_0163 0.82 +0.3 167,130 + Echvi_0163 0.82 +0.5 167,208 + +0.3 167,209 - -1.8 167,209 - -0.7 167,209 - +1.4 167,275 + +1.8 167,275 + -1.2 167,276 - +0.4 167,412 - Echvi_0164 0.11 +1.0 167,456 + Echvi_0164 0.15 -0.5 167,456 + Echvi_0164 0.15 +1.8 167,457 - Echvi_0164 0.15 +0.4 167,457 - Echvi_0164 0.15 +0.1 167,457 - Echvi_0164 0.15 -0.4 167,458 + Echvi_0164 0.15 +0.9 167,458 + Echvi_0164 0.15 +0.4 167,458 + Echvi_0164 0.15 +1.0 167,458 + Echvi_0164 0.15 +0.3 167,459 - Echvi_0164 0.15 +0.1 167,459 - Echvi_0164 0.15 +0.4 167,459 - Echvi_0164 0.15 +0.7 167,459 - Echvi_0164 0.15 -1.2 167,462 + Echvi_0164 0.15 +1.3 167,463 - Echvi_0164 0.15 +1.9 167,463 - Echvi_0164 0.15 +1.9 167,468 + Echvi_0164 0.16 +1.0 167,468 + Echvi_0164 0.16 +0.1 167,468 + Echvi_0164 0.16 +1.6 167,469 - Echvi_0164 0.16 -0.0 167,472 - Echvi_0164 0.16 +0.4 167,476 + Echvi_0164 0.17 +0.7 167,504 + Echvi_0164 0.19 +0.9 167,505 - Echvi_0164 0.19 -0.3 167,506 - Echvi_0164 0.19 +0.5 167,537 + Echvi_0164 0.22 +0.2 167,538 - Echvi_0164 0.22 +0.6 167,587 + Echvi_0164 0.27 -0.7
Or see this region's nucleotide sequence