Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21645 and CA264_21650 are separated by 9 nucleotides CA264_21650 and CA264_21655 are separated by 4 nucleotides
CA264_21645: CA264_21645 - phosphoribosylpyrophosphate synthetase, at 197,431 to 198,324
_21645
CA264_21650: CA264_21650 - thymidine phosphorylase, at 198,334 to 199,827
_21650
CA264_21655: CA264_21655 - MBL fold hydrolase, at 199,832 to 201,199
_21655
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.335 kb on + strand at 197.335 kb on + strand at 197.350 kb on + strand at 197.350 kb on + strand at 197.351 kb on - strand at 197.351 kb on - strand at 197.351 kb on - strand at 197.353 kb on + strand at 197.380 kb on + strand at 197.380 kb on + strand at 197.381 kb on - strand at 197.381 kb on - strand at 197.381 kb on - strand at 197.382 kb on + strand at 197.382 kb on + strand at 197.383 kb on - strand at 197.383 kb on - strand at 197.487 kb on + strand at 197.487 kb on + strand at 197.487 kb on + strand at 197.488 kb on - strand at 197.523 kb on + strand, within CA264_21645 at 197.623 kb on + strand, within CA264_21645 at 197.637 kb on + strand, within CA264_21645 at 197.638 kb on - strand, within CA264_21645 at 197.652 kb on + strand, within CA264_21645 at 197.659 kb on - strand, within CA264_21645 at 197.663 kb on - strand, within CA264_21645 at 197.663 kb on - strand, within CA264_21645 at 197.663 kb on - strand, within CA264_21645 at 197.663 kb on - strand, within CA264_21645 at 197.666 kb on - strand, within CA264_21645 at 197.666 kb on - strand, within CA264_21645 at 197.667 kb on + strand, within CA264_21645 at 197.667 kb on + strand, within CA264_21645 at 197.667 kb on + strand, within CA264_21645 at 197.668 kb on - strand, within CA264_21645 at 197.668 kb on - strand, within CA264_21645 at 197.688 kb on + strand, within CA264_21645 at 197.722 kb on + strand, within CA264_21645 at 197.723 kb on - strand, within CA264_21645 at 197.769 kb on - strand, within CA264_21645 at 197.801 kb on - strand, within CA264_21645 at 197.854 kb on - strand, within CA264_21645 at 197.855 kb on + strand, within CA264_21645 at 197.856 kb on - strand, within CA264_21645 at 197.856 kb on - strand, within CA264_21645 at 197.856 kb on - strand, within CA264_21645 at 197.856 kb on - strand, within CA264_21645 at 197.860 kb on - strand, within CA264_21645 at 197.860 kb on - strand, within CA264_21645 at 197.891 kb on - strand, within CA264_21645 at 197.912 kb on + strand, within CA264_21645 at 197.913 kb on - strand, within CA264_21645 at 197.941 kb on + strand, within CA264_21645 at 197.958 kb on + strand, within CA264_21645 at 197.959 kb on - strand, within CA264_21645 at 197.986 kb on + strand, within CA264_21645 at 198.036 kb on + strand, within CA264_21645 at 198.036 kb on + strand at 198.037 kb on - strand, within CA264_21645 at 198.050 kb on + strand, within CA264_21645 at 198.051 kb on - strand, within CA264_21645 at 198.051 kb on - strand, within CA264_21645 at 198.060 kb on - strand, within CA264_21645 at 198.151 kb on - strand, within CA264_21645 at 198.202 kb on + strand, within CA264_21645 at 198.202 kb on + strand, within CA264_21645 at 198.206 kb on + strand, within CA264_21645 at 198.207 kb on - strand, within CA264_21645 at 198.235 kb on - strand at 198.324 kb on + strand at 198.325 kb on - strand at 198.328 kb on + strand at 198.329 kb on - strand at 198.329 kb on - strand at 198.329 kb on - strand at 198.335 kb on + strand at 198.345 kb on + strand at 198.345 kb on + strand at 198.346 kb on - strand at 198.367 kb on + strand at 198.367 kb on + strand at 198.367 kb on + strand at 198.368 kb on + strand at 198.368 kb on - strand at 198.371 kb on + strand at 198.383 kb on + strand at 198.388 kb on + strand at 198.388 kb on + strand at 198.389 kb on - strand at 198.420 kb on - strand at 198.433 kb on + strand at 198.434 kb on - strand at 198.437 kb on - strand at 198.439 kb on + strand at 198.466 kb on + strand at 198.579 kb on + strand, within CA264_21650 at 198.603 kb on + strand, within CA264_21650 at 198.627 kb on + strand, within CA264_21650 at 198.628 kb on - strand, within CA264_21650 at 198.679 kb on + strand, within CA264_21650 at 198.734 kb on - strand, within CA264_21650 at 198.734 kb on - strand, within CA264_21650 at 198.736 kb on + strand, within CA264_21650 at 198.736 kb on + strand, within CA264_21650 at 198.737 kb on - strand, within CA264_21650 at 198.740 kb on - strand, within CA264_21650 at 198.741 kb on + strand, within CA264_21650 at 198.741 kb on + strand, within CA264_21650 at 198.783 kb on + strand, within CA264_21650 at 198.823 kb on + strand, within CA264_21650 at 198.835 kb on + strand, within CA264_21650 at 198.940 kb on + strand, within CA264_21650 at 198.940 kb on + strand, within CA264_21650 at 199.010 kb on - strand, within CA264_21650 at 199.042 kb on + strand, within CA264_21650 at 199.043 kb on - strand, within CA264_21650 at 199.168 kb on - strand, within CA264_21650 at 199.176 kb on + strand, within CA264_21650 at 199.267 kb on - strand, within CA264_21650 at 199.267 kb on - strand, within CA264_21650 at 199.274 kb on - strand, within CA264_21650 at 199.274 kb on - strand, within CA264_21650 at 199.276 kb on + strand, within CA264_21650 at 199.276 kb on + strand, within CA264_21650 at 199.276 kb on + strand, within CA264_21650 at 199.276 kb on + strand, within CA264_21650 at 199.277 kb on - strand, within CA264_21650 at 199.277 kb on - strand, within CA264_21650 at 199.278 kb on + strand, within CA264_21650 at 199.279 kb on - strand, within CA264_21650 at 199.279 kb on - strand, within CA264_21650 at 199.279 kb on - strand, within CA264_21650 at 199.279 kb on - strand, within CA264_21650 at 199.309 kb on + strand, within CA264_21650 at 199.309 kb on + strand, within CA264_21650 at 199.309 kb on + strand, within CA264_21650 at 199.310 kb on - strand, within CA264_21650 at 199.327 kb on + strand, within CA264_21650 at 199.328 kb on - strand, within CA264_21650 at 199.331 kb on - strand, within CA264_21650 at 199.331 kb on - strand, within CA264_21650 at 199.428 kb on + strand, within CA264_21650 at 199.428 kb on + strand, within CA264_21650 at 199.438 kb on + strand, within CA264_21650 at 199.438 kb on + strand, within CA264_21650 at 199.439 kb on - strand, within CA264_21650 at 199.439 kb on - strand, within CA264_21650 at 199.468 kb on + strand, within CA264_21650 at 199.468 kb on + strand, within CA264_21650 at 199.504 kb on - strand, within CA264_21650 at 199.518 kb on - strand, within CA264_21650 at 199.558 kb on + strand, within CA264_21650 at 199.559 kb on - strand, within CA264_21650 at 199.560 kb on + strand, within CA264_21650 at 199.667 kb on - strand, within CA264_21650 at 199.678 kb on + strand at 199.706 kb on - strand at 199.706 kb on - strand at 199.737 kb on + strand at 199.738 kb on - strand at 199.741 kb on + strand at 199.741 kb on + strand at 199.742 kb on - strand at 199.742 kb on - strand at 199.742 kb on - strand at 199.763 kb on + strand at 199.763 kb on + strand at 199.764 kb on - strand at 199.764 kb on - strand at 199.764 kb on - strand at 199.811 kb on - strand at 199.834 kb on - strand at 199.834 kb on - strand at 199.835 kb on + strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.850 kb on - strand at 199.851 kb on + strand at 199.851 kb on + strand at 199.852 kb on - strand at 199.852 kb on - strand at 199.852 kb on - strand at 199.853 kb on + strand at 199.854 kb on - strand at 199.854 kb on - strand at 199.943 kb on + strand at 199.974 kb on - strand, within CA264_21655 at 200.173 kb on - strand, within CA264_21655 at 200.177 kb on + strand, within CA264_21655 at 200.177 kb on + strand, within CA264_21655 at 200.177 kb on + strand, within CA264_21655 at 200.178 kb on - strand, within CA264_21655 at 200.178 kb on - strand, within CA264_21655 at 200.178 kb on - strand, within CA264_21655 at 200.236 kb on + strand, within CA264_21655 at 200.239 kb on + strand, within CA264_21655 at 200.261 kb on + strand, within CA264_21655 at 200.262 kb on - strand, within CA264_21655 at 200.281 kb on + strand, within CA264_21655 at 200.346 kb on - strand, within CA264_21655 at 200.347 kb on + strand, within CA264_21655 at 200.352 kb on - strand, within CA264_21655 at 200.390 kb on + strand, within CA264_21655 at 200.537 kb on + strand, within CA264_21655 at 200.538 kb on - strand, within CA264_21655 at 200.549 kb on + strand, within CA264_21655 at 200.562 kb on + strand, within CA264_21655 at 200.562 kb on + strand, within CA264_21655 at 200.563 kb on - strand, within CA264_21655 at 200.574 kb on - strand, within CA264_21655 at 200.576 kb on - strand, within CA264_21655 at 200.614 kb on - strand, within CA264_21655 at 200.614 kb on - strand, within CA264_21655 at 200.673 kb on - strand, within CA264_21655 at 200.704 kb on + strand, within CA264_21655 at 200.704 kb on + strand, within CA264_21655 at 200.715 kb on + strand, within CA264_21655 at 200.782 kb on - strand, within CA264_21655 at 200.798 kb on + strand, within CA264_21655
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 197,335 + -0.6 197,335 + +0.2 197,350 + -0.9 197,350 + -0.3 197,351 - -0.7 197,351 - +0.1 197,351 - +0.3 197,353 + -0.3 197,380 + +0.4 197,380 + -0.2 197,381 - -1.5 197,381 - -0.4 197,381 - -1.0 197,382 + -0.9 197,382 + -0.9 197,383 - +0.1 197,383 - -0.4 197,487 + -0.2 197,487 + +1.3 197,487 + +2.2 197,488 - -1.3 197,523 + CA264_21645 0.10 +0.2 197,623 + CA264_21645 0.21 -0.4 197,637 + CA264_21645 0.23 -0.1 197,638 - CA264_21645 0.23 -1.9 197,652 + CA264_21645 0.25 -0.5 197,659 - CA264_21645 0.26 +1.1 197,663 - CA264_21645 0.26 +0.3 197,663 - CA264_21645 0.26 -0.4 197,663 - CA264_21645 0.26 +0.9 197,663 - CA264_21645 0.26 -0.2 197,666 - CA264_21645 0.26 -1.8 197,666 - CA264_21645 0.26 -1.9 197,667 + CA264_21645 0.26 -0.0 197,667 + CA264_21645 0.26 +0.7 197,667 + CA264_21645 0.26 -0.0 197,668 - CA264_21645 0.27 +1.2 197,668 - CA264_21645 0.27 -0.5 197,688 + CA264_21645 0.29 -0.3 197,722 + CA264_21645 0.33 -0.9 197,723 - CA264_21645 0.33 +0.3 197,769 - CA264_21645 0.38 -0.0 197,801 - CA264_21645 0.41 -0.1 197,854 - CA264_21645 0.47 -1.1 197,855 + CA264_21645 0.47 +0.0 197,856 - CA264_21645 0.48 +1.1 197,856 - CA264_21645 0.48 -0.2 197,856 - CA264_21645 0.48 -0.8 197,856 - CA264_21645 0.48 -0.4 197,860 - CA264_21645 0.48 +0.5 197,860 - CA264_21645 0.48 +0.4 197,891 - CA264_21645 0.51 -0.6 197,912 + CA264_21645 0.54 +0.1 197,913 - CA264_21645 0.54 -0.5 197,941 + CA264_21645 0.57 -2.0 197,958 + CA264_21645 0.59 +0.8 197,959 - CA264_21645 0.59 +0.7 197,986 + CA264_21645 0.62 -0.3 198,036 + CA264_21645 0.68 -1.1 198,036 + +1.7 198,037 - CA264_21645 0.68 +0.2 198,050 + CA264_21645 0.69 -1.2 198,051 - CA264_21645 0.69 +0.4 198,051 - CA264_21645 0.69 -1.4 198,060 - CA264_21645 0.70 -0.1 198,151 - CA264_21645 0.81 +0.7 198,202 + CA264_21645 0.86 -0.5 198,202 + CA264_21645 0.86 -1.4 198,206 + CA264_21645 0.87 -1.5 198,207 - CA264_21645 0.87 -1.3 198,235 - -1.3 198,324 + -0.7 198,325 - +0.5 198,328 + -0.6 198,329 - -0.0 198,329 - +0.2 198,329 - +0.1 198,335 + +0.6 198,345 + -0.1 198,345 + -2.3 198,346 - -0.4 198,367 + -3.3 198,367 + -0.5 198,367 + -0.3 198,368 + -0.1 198,368 - +0.2 198,371 + -0.2 198,383 + -2.0 198,388 + -1.2 198,388 + +0.2 198,389 - +1.2 198,420 - +0.0 198,433 + +0.4 198,434 - +0.4 198,437 - +0.4 198,439 + +0.4 198,466 + -0.3 198,579 + CA264_21650 0.16 -1.6 198,603 + CA264_21650 0.18 -0.5 198,627 + CA264_21650 0.20 -0.7 198,628 - CA264_21650 0.20 +0.3 198,679 + CA264_21650 0.23 -0.5 198,734 - CA264_21650 0.27 +0.7 198,734 - CA264_21650 0.27 -0.0 198,736 + CA264_21650 0.27 +0.5 198,736 + CA264_21650 0.27 -0.3 198,737 - CA264_21650 0.27 -0.3 198,740 - CA264_21650 0.27 -0.6 198,741 + CA264_21650 0.27 -0.3 198,741 + CA264_21650 0.27 -1.0 198,783 + CA264_21650 0.30 -0.3 198,823 + CA264_21650 0.33 +0.0 198,835 + CA264_21650 0.34 -0.9 198,940 + CA264_21650 0.41 +0.3 198,940 + CA264_21650 0.41 -0.6 199,010 - CA264_21650 0.45 +0.0 199,042 + CA264_21650 0.47 -0.3 199,043 - CA264_21650 0.47 +0.5 199,168 - CA264_21650 0.56 -1.2 199,176 + CA264_21650 0.56 -0.3 199,267 - CA264_21650 0.62 +0.1 199,267 - CA264_21650 0.62 +0.5 199,274 - CA264_21650 0.63 +0.7 199,274 - CA264_21650 0.63 +0.2 199,276 + CA264_21650 0.63 -0.3 199,276 + CA264_21650 0.63 +0.2 199,276 + CA264_21650 0.63 -0.5 199,276 + CA264_21650 0.63 -1.2 199,277 - CA264_21650 0.63 -0.5 199,277 - CA264_21650 0.63 +0.1 199,278 + CA264_21650 0.63 -1.1 199,279 - CA264_21650 0.63 -0.7 199,279 - CA264_21650 0.63 -1.0 199,279 - CA264_21650 0.63 -0.8 199,279 - CA264_21650 0.63 -2.9 199,309 + CA264_21650 0.65 -0.4 199,309 + CA264_21650 0.65 -0.4 199,309 + CA264_21650 0.65 +1.2 199,310 - CA264_21650 0.65 -1.4 199,327 + CA264_21650 0.66 -0.5 199,328 - CA264_21650 0.67 -0.2 199,331 - CA264_21650 0.67 +0.8 199,331 - CA264_21650 0.67 -0.1 199,428 + CA264_21650 0.73 +0.0 199,428 + CA264_21650 0.73 -0.2 199,438 + CA264_21650 0.74 +0.4 199,438 + CA264_21650 0.74 -0.8 199,439 - CA264_21650 0.74 +0.9 199,439 - CA264_21650 0.74 +0.5 199,468 + CA264_21650 0.76 -0.9 199,468 + CA264_21650 0.76 -0.1 199,504 - CA264_21650 0.78 +0.3 199,518 - CA264_21650 0.79 +0.1 199,558 + CA264_21650 0.82 -1.1 199,559 - CA264_21650 0.82 -0.6 199,560 + CA264_21650 0.82 -0.1 199,667 - CA264_21650 0.89 +0.6 199,678 + -1.7 199,706 - -0.7 199,706 - -0.6 199,737 + +0.3 199,738 - -1.6 199,741 + +0.2 199,741 + -0.4 199,742 - +0.5 199,742 - +0.3 199,742 - -2.9 199,763 + -1.7 199,763 + -0.3 199,764 - -0.6 199,764 - +0.2 199,764 - +0.3 199,811 - -0.4 199,834 - -0.8 199,834 - +1.2 199,835 + -1.1 199,849 + -0.2 199,849 + -0.2 199,850 - +0.1 199,851 + -1.3 199,851 + +0.8 199,852 - -0.7 199,852 - +1.0 199,852 - +0.7 199,853 + -0.3 199,854 - +0.1 199,854 - +0.5 199,943 + +0.3 199,974 - CA264_21655 0.10 +0.0 200,173 - CA264_21655 0.25 -0.3 200,177 + CA264_21655 0.25 +0.5 200,177 + CA264_21655 0.25 +0.5 200,177 + CA264_21655 0.25 -0.6 200,178 - CA264_21655 0.25 -0.1 200,178 - CA264_21655 0.25 -0.2 200,178 - CA264_21655 0.25 -0.3 200,236 + CA264_21655 0.30 +0.0 200,239 + CA264_21655 0.30 -1.1 200,261 + CA264_21655 0.31 -0.1 200,262 - CA264_21655 0.31 +0.9 200,281 + CA264_21655 0.33 -0.4 200,346 - CA264_21655 0.38 -0.1 200,347 + CA264_21655 0.38 -1.1 200,352 - CA264_21655 0.38 -1.5 200,390 + CA264_21655 0.41 +1.3 200,537 + CA264_21655 0.52 +0.3 200,538 - CA264_21655 0.52 +0.0 200,549 + CA264_21655 0.52 +0.3 200,562 + CA264_21655 0.53 -0.5 200,562 + CA264_21655 0.53 -0.2 200,563 - CA264_21655 0.53 +0.3 200,574 - CA264_21655 0.54 +0.2 200,576 - CA264_21655 0.54 -0.5 200,614 - CA264_21655 0.57 -1.1 200,614 - CA264_21655 0.57 -0.3 200,673 - CA264_21655 0.61 -0.2 200,704 + CA264_21655 0.64 -0.5 200,704 + CA264_21655 0.64 +1.0 200,715 + CA264_21655 0.65 -0.5 200,782 - CA264_21655 0.69 -0.5 200,798 + CA264_21655 0.71 +0.0
Or see this region's nucleotide sequence