Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21125

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21120 and CA264_21125 are separated by 585 nucleotidesCA264_21125 and CA264_21130 are separated by 410 nucleotidesCA264_21130 and CA264_21135 are separated by 50 nucleotides CA264_21120: CA264_21120 - ZIP family zinc transporter, at 89,964 to 90,704 _21120 CA264_21125: CA264_21125 - hypothetical protein, at 91,290 to 91,496 _21125 CA264_21130: CA264_21130 - hypothetical protein, at 91,907 to 92,332 _21130 CA264_21135: CA264_21135 - cation transporter, at 92,383 to 93,279 _21135 Position (kb) 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 90.320 kb on + strand, within CA264_21120at 90.320 kb on + strand, within CA264_21120at 90.321 kb on - strand, within CA264_21120at 90.425 kb on + strand, within CA264_21120at 90.586 kb on + strand, within CA264_21120at 90.586 kb on + strand, within CA264_21120at 90.587 kb on - strand, within CA264_21120at 90.605 kb on - strand, within CA264_21120at 90.674 kb on + strandat 90.679 kb on + strandat 90.680 kb on - strandat 90.680 kb on - strandat 90.680 kb on - strandat 90.702 kb on + strandat 90.710 kb on - strandat 90.743 kb on + strandat 90.829 kb on + strandat 90.866 kb on - strandat 90.907 kb on - strandat 90.939 kb on + strandat 90.939 kb on + strandat 90.940 kb on - strandat 90.940 kb on - strandat 90.941 kb on + strandat 90.941 kb on + strandat 90.941 kb on + strandat 90.942 kb on - strandat 91.010 kb on + strandat 91.016 kb on + strandat 91.028 kb on - strandat 91.028 kb on - strandat 91.092 kb on - strandat 91.130 kb on - strandat 91.132 kb on + strandat 91.133 kb on - strandat 91.133 kb on - strandat 91.180 kb on - strandat 91.180 kb on - strandat 91.180 kb on - strandat 91.184 kb on - strandat 91.210 kb on - strandat 91.221 kb on - strandat 91.221 kb on - strandat 91.223 kb on - strandat 91.253 kb on + strandat 91.254 kb on - strandat 91.258 kb on - strandat 91.259 kb on + strandat 91.332 kb on - strand, within CA264_21125at 91.382 kb on + strand, within CA264_21125at 91.436 kb on + strand, within CA264_21125at 91.446 kb on - strand, within CA264_21125at 91.457 kb on + strand, within CA264_21125at 91.459 kb on + strand, within CA264_21125at 91.460 kb on - strand, within CA264_21125at 91.460 kb on - strand, within CA264_21125at 91.522 kb on + strandat 91.525 kb on + strandat 91.525 kb on + strandat 91.558 kb on - strandat 91.558 kb on - strandat 91.591 kb on - strandat 91.592 kb on + strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.593 kb on - strandat 91.596 kb on + strandat 91.597 kb on - strandat 91.597 kb on - strandat 91.597 kb on - strandat 91.598 kb on + strandat 91.605 kb on + strandat 91.605 kb on + strandat 91.605 kb on + strandat 91.606 kb on - strandat 91.606 kb on - strandat 91.627 kb on + strandat 91.627 kb on + strandat 91.634 kb on - strandat 91.652 kb on - strandat 91.652 kb on - strandat 91.652 kb on - strandat 91.670 kb on - strandat 91.730 kb on + strandat 91.730 kb on + strandat 91.732 kb on + strandat 91.733 kb on - strandat 91.762 kb on + strandat 91.763 kb on - strandat 91.790 kb on + strandat 91.838 kb on - strandat 91.866 kb on - strandat 91.956 kb on + strand, within CA264_21130at 91.956 kb on + strand, within CA264_21130at 91.956 kb on + strand, within CA264_21130at 91.957 kb on - strand, within CA264_21130at 92.071 kb on + strand, within CA264_21130at 92.185 kb on + strand, within CA264_21130at 92.185 kb on + strand, within CA264_21130at 92.185 kb on + strand, within CA264_21130at 92.187 kb on + strand, within CA264_21130at 92.188 kb on - strand, within CA264_21130at 92.188 kb on - strand, within CA264_21130at 92.188 kb on - strand, within CA264_21130at 92.249 kb on + strand, within CA264_21130at 92.251 kb on + strand, within CA264_21130at 92.258 kb on + strand, within CA264_21130at 92.259 kb on - strand, within CA264_21130at 92.259 kb on - strand, within CA264_21130at 92.259 kb on - strand, within CA264_21130at 92.287 kb on + strand, within CA264_21130at 92.287 kb on + strand, within CA264_21130at 92.291 kb on + strandat 92.291 kb on + strandat 92.292 kb on - strandat 92.292 kb on - strandat 92.292 kb on - strandat 92.292 kb on - strandat 92.293 kb on + strandat 92.327 kb on + strandat 92.328 kb on - strandat 92.328 kb on - strandat 92.328 kb on - strandat 92.332 kb on + strandat 92.350 kb on + strandat 92.351 kb on - strandat 92.351 kb on - strandat 92.358 kb on + strandat 92.359 kb on - strandat 92.364 kb on + strandat 92.402 kb on + strandat 92.403 kb on - strandat 92.461 kb on + strandat 92.461 kb on + strandat 92.462 kb on - strandat 92.463 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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90,320 + CA264_21120 0.48 +1.3
90,320 + CA264_21120 0.48 -1.4
90,321 - CA264_21120 0.48 -0.4
90,425 + CA264_21120 0.62 -2.2
90,586 + CA264_21120 0.84 -1.6
90,586 + CA264_21120 0.84 -0.4
90,587 - CA264_21120 0.84 +1.3
90,605 - CA264_21120 0.87 -0.4
90,674 + -1.2
90,679 + -0.2
90,680 - +0.7
90,680 - +0.1
90,680 - +1.9
90,702 + +0.8
90,710 - -3.1
90,743 + +0.1
90,829 + -0.6
90,866 - +0.1
90,907 - -1.5
90,939 + -0.5
90,939 + -1.5
90,940 - -0.5
90,940 - +0.2
90,941 + +1.4
90,941 + +0.2
90,941 + -2.4
90,942 - +1.1
91,010 + -0.8
91,016 + -0.8
91,028 - +0.3
91,028 - -1.0
91,092 - -0.5
91,130 - +0.1
91,132 + +0.5
91,133 - -1.2
91,133 - +0.6
91,180 - +1.7
91,180 - +0.5
91,180 - -0.5
91,184 - +0.2
91,210 - -0.5
91,221 - +0.7
91,221 - -1.2
91,223 - -1.1
91,253 + -0.0
91,254 - +0.6
91,258 - +0.3
91,259 + -0.4
91,332 - CA264_21125 0.20 -1.2
91,382 + CA264_21125 0.44 -0.3
91,436 + CA264_21125 0.71 -0.3
91,446 - CA264_21125 0.75 -0.3
91,457 + CA264_21125 0.81 +0.1
91,459 + CA264_21125 0.82 -0.9
91,460 - CA264_21125 0.82 -0.8
91,460 - CA264_21125 0.82 -0.5
91,522 + +0.3
91,525 + +0.1
91,525 + +0.7
91,558 - +0.5
91,558 - +1.3
91,591 - +0.1
91,592 + -0.5
91,593 - +0.1
91,593 - -1.2
91,593 - +1.2
91,593 - -0.5
91,593 - -0.3
91,593 - -2.2
91,593 - -0.3
91,593 - +0.9
91,593 - +0.4
91,596 + +0.8
91,597 - +0.1
91,597 - +0.5
91,597 - -3.3
91,598 + +0.6
91,605 + +0.4
91,605 + -0.6
91,605 + -0.5
91,606 - -0.1
91,606 - +0.2
91,627 + -2.1
91,627 + +0.1
91,634 - +0.3
91,652 - -0.2
91,652 - +0.6
91,652 - -1.4
91,670 - -0.1
91,730 + -0.7
91,730 + -0.4
91,732 + -1.4
91,733 - +0.1
91,762 + +0.8
91,763 - -0.2
91,790 + +0.0
91,838 - -1.8
91,866 - +0.9
91,956 + CA264_21130 0.12 -0.1
91,956 + CA264_21130 0.12 -0.7
91,956 + CA264_21130 0.12 -0.8
91,957 - CA264_21130 0.12 +1.3
92,071 + CA264_21130 0.38 -1.1
92,185 + CA264_21130 0.65 +1.0
92,185 + CA264_21130 0.65 -1.8
92,185 + CA264_21130 0.65 -1.8
92,187 + CA264_21130 0.66 -0.5
92,188 - CA264_21130 0.66 +0.1
92,188 - CA264_21130 0.66 -1.0
92,188 - CA264_21130 0.66 +0.5
92,249 + CA264_21130 0.80 -0.8
92,251 + CA264_21130 0.81 +0.5
92,258 + CA264_21130 0.82 +0.5
92,259 - CA264_21130 0.83 +0.1
92,259 - CA264_21130 0.83 +0.1
92,259 - CA264_21130 0.83 -0.3
92,287 + CA264_21130 0.89 +0.5
92,287 + CA264_21130 0.89 +0.8
92,291 + +1.0
92,291 + -0.5
92,292 - -0.3
92,292 - -0.7
92,292 - -0.5
92,292 - -0.7
92,293 + +0.8
92,327 + +0.6
92,328 - -0.0
92,328 - +0.1
92,328 - +0.1
92,332 + -0.8
92,350 + -0.2
92,351 - -1.7
92,351 - -2.2
92,358 + +0.5
92,359 - -2.2
92,364 + -0.3
92,402 + +0.2
92,403 - -2.8
92,461 + +0.4
92,461 + +1.1
92,462 - -0.2
92,463 + +1.4

Or see this region's nucleotide sequence