Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20525

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20515 and CA264_20520 are separated by 395 nucleotidesCA264_20520 and CA264_20525 are separated by 46 nucleotidesCA264_20525 and CA264_20530 are separated by 23 nucleotidesCA264_20530 and CA264_20535 are separated by 48 nucleotides CA264_20515: CA264_20515 - transcription termination factor Rho, at 4,726,207 to 4,727,952 _20515 CA264_20520: CA264_20520 - hypothetical protein, at 4,728,348 to 4,728,821 _20520 CA264_20525: CA264_20525 - prenyltransferase, at 4,728,868 to 4,729,776 _20525 CA264_20530: CA264_20530 - hypothetical protein, at 4,729,800 to 4,730,687 _20530 CA264_20535: CA264_20535 - hypothetical protein, at 4,730,736 to 4,731,239 _20535 Position (kb) 4728 4729 4730Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4727.964 kb on - strandat 4727.967 kb on - strandat 4727.971 kb on + strandat 4727.971 kb on + strandat 4727.971 kb on + strandat 4727.971 kb on + strandat 4727.971 kb on + strandat 4727.971 kb on + strandat 4727.977 kb on - strandat 4727.979 kb on - strandat 4728.027 kb on - strandat 4728.027 kb on - strandat 4728.027 kb on - strandat 4728.035 kb on + strandat 4728.035 kb on + strandat 4728.036 kb on - strandat 4728.036 kb on - strandat 4728.081 kb on + strandat 4728.083 kb on + strandat 4728.083 kb on + strandat 4728.083 kb on + strandat 4728.084 kb on - strandat 4728.084 kb on - strandat 4728.084 kb on - strandat 4728.202 kb on + strandat 4728.203 kb on - strandat 4728.204 kb on + strandat 4728.204 kb on + strandat 4728.204 kb on + strandat 4728.204 kb on + strandat 4728.204 kb on + strandat 4728.205 kb on - strandat 4728.205 kb on - strandat 4728.208 kb on + strandat 4728.208 kb on + strandat 4728.208 kb on + strandat 4728.208 kb on + strandat 4728.208 kb on + strandat 4728.208 kb on + strandat 4728.208 kb on + strandat 4728.209 kb on - strandat 4728.209 kb on - strandat 4728.209 kb on - strandat 4728.210 kb on + strandat 4728.211 kb on - strandat 4728.211 kb on - strandat 4728.211 kb on - strandat 4728.349 kb on + strandat 4728.395 kb on - strandat 4728.431 kb on + strand, within CA264_20520at 4728.497 kb on - strand, within CA264_20520at 4728.558 kb on - strand, within CA264_20520at 4728.643 kb on - strand, within CA264_20520at 4728.753 kb on + strand, within CA264_20520at 4728.754 kb on - strand, within CA264_20520at 4728.754 kb on - strand, within CA264_20520at 4728.811 kb on - strandat 4728.841 kb on + strandat 4728.841 kb on + strandat 4728.841 kb on + strandat 4728.841 kb on + strandat 4728.842 kb on - strandat 4728.842 kb on - strandat 4728.842 kb on - strandat 4728.843 kb on + strandat 4728.843 kb on + strandat 4728.843 kb on + strandat 4728.844 kb on - strandat 4728.852 kb on - strandat 4728.920 kb on - strandat 4729.064 kb on + strand, within CA264_20525at 4729.065 kb on - strand, within CA264_20525at 4729.096 kb on + strand, within CA264_20525at 4729.119 kb on - strand, within CA264_20525at 4729.291 kb on + strand, within CA264_20525at 4729.308 kb on - strand, within CA264_20525at 4729.308 kb on - strand, within CA264_20525at 4729.308 kb on - strand, within CA264_20525at 4729.308 kb on - strand, within CA264_20525at 4729.308 kb on - strand, within CA264_20525at 4729.382 kb on + strand, within CA264_20525at 4729.410 kb on - strand, within CA264_20525at 4729.468 kb on + strand, within CA264_20525at 4729.556 kb on + strand, within CA264_20525at 4729.556 kb on + strand, within CA264_20525at 4729.569 kb on - strand, within CA264_20525at 4729.578 kb on + strand, within CA264_20525at 4729.603 kb on + strand, within CA264_20525at 4729.604 kb on - strand, within CA264_20525at 4729.682 kb on + strand, within CA264_20525at 4729.683 kb on - strand, within CA264_20525at 4729.762 kb on - strandat 4729.845 kb on + strandat 4729.914 kb on + strand, within CA264_20530at 4729.915 kb on - strand, within CA264_20530at 4729.977 kb on - strand, within CA264_20530at 4730.005 kb on + strand, within CA264_20530at 4730.061 kb on + strand, within CA264_20530at 4730.061 kb on + strand, within CA264_20530at 4730.269 kb on - strand, within CA264_20530at 4730.269 kb on - strand, within CA264_20530at 4730.270 kb on + strand, within CA264_20530at 4730.306 kb on - strand, within CA264_20530at 4730.311 kb on + strand, within CA264_20530at 4730.346 kb on - strand, within CA264_20530at 4730.488 kb on + strand, within CA264_20530at 4730.715 kb on + strandat 4730.716 kb on - strandat 4730.729 kb on + strandat 4730.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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4,727,964 - -1.6
4,727,967 - -1.7
4,727,971 + +0.6
4,727,971 + -3.2
4,727,971 + +0.0
4,727,971 + -0.0
4,727,971 + +0.0
4,727,971 + -0.4
4,727,977 - +1.2
4,727,979 - -0.8
4,728,027 - -0.7
4,728,027 - +0.4
4,728,027 - +0.1
4,728,035 + +0.6
4,728,035 + -0.2
4,728,036 - +0.9
4,728,036 - -0.2
4,728,081 + +0.1
4,728,083 + -1.1
4,728,083 + +0.5
4,728,083 + -1.0
4,728,084 - +1.7
4,728,084 - +0.1
4,728,084 - +0.2
4,728,202 + +0.6
4,728,203 - -0.3
4,728,204 + -0.5
4,728,204 + -0.8
4,728,204 + -1.2
4,728,204 + +0.5
4,728,204 + +1.3
4,728,205 - +0.0
4,728,205 - +2.0
4,728,208 + -1.6
4,728,208 + -1.0
4,728,208 + -0.2
4,728,208 + -0.9
4,728,208 + -2.1
4,728,208 + -0.9
4,728,208 + -0.3
4,728,209 - -0.1
4,728,209 - -0.5
4,728,209 - -1.4
4,728,210 + -1.5
4,728,211 - -0.5
4,728,211 - -1.7
4,728,211 - -1.3
4,728,349 + -0.7
4,728,395 - +0.2
4,728,431 + CA264_20520 0.18 -0.2
4,728,497 - CA264_20520 0.31 -1.1
4,728,558 - CA264_20520 0.44 -0.2
4,728,643 - CA264_20520 0.62 -0.8
4,728,753 + CA264_20520 0.85 +1.9
4,728,754 - CA264_20520 0.86 +0.3
4,728,754 - CA264_20520 0.86 +0.0
4,728,811 - -0.9
4,728,841 + -1.5
4,728,841 + -1.0
4,728,841 + -0.4
4,728,841 + +0.5
4,728,842 - -0.4
4,728,842 - +1.1
4,728,842 - +0.1
4,728,843 + +0.6
4,728,843 + -1.5
4,728,843 + +1.3
4,728,844 - +0.2
4,728,852 - -0.3
4,728,920 - +1.5
4,729,064 + CA264_20525 0.22 -0.8
4,729,065 - CA264_20525 0.22 +0.0
4,729,096 + CA264_20525 0.25 +0.4
4,729,119 - CA264_20525 0.28 -0.3
4,729,291 + CA264_20525 0.47 -0.0
4,729,308 - CA264_20525 0.48 +0.1
4,729,308 - CA264_20525 0.48 -0.1
4,729,308 - CA264_20525 0.48 -0.4
4,729,308 - CA264_20525 0.48 -1.6
4,729,308 - CA264_20525 0.48 -1.1
4,729,382 + CA264_20525 0.57 -0.9
4,729,410 - CA264_20525 0.60 -0.7
4,729,468 + CA264_20525 0.66 -1.4
4,729,556 + CA264_20525 0.76 -1.4
4,729,556 + CA264_20525 0.76 -0.6
4,729,569 - CA264_20525 0.77 -0.6
4,729,578 + CA264_20525 0.78 -0.6
4,729,603 + CA264_20525 0.81 +0.0
4,729,604 - CA264_20525 0.81 +0.6
4,729,682 + CA264_20525 0.90 -0.8
4,729,683 - CA264_20525 0.90 -0.8
4,729,762 - +0.2
4,729,845 + -0.2
4,729,914 + CA264_20530 0.13 +0.1
4,729,915 - CA264_20530 0.13 -0.3
4,729,977 - CA264_20530 0.20 -0.4
4,730,005 + CA264_20530 0.23 -0.1
4,730,061 + CA264_20530 0.29 +0.5
4,730,061 + CA264_20530 0.29 -0.6
4,730,269 - CA264_20530 0.53 -0.9
4,730,269 - CA264_20530 0.53 -0.3
4,730,270 + CA264_20530 0.53 +0.8
4,730,306 - CA264_20530 0.57 -0.8
4,730,311 + CA264_20530 0.58 -2.1
4,730,346 - CA264_20530 0.61 -2.4
4,730,488 + CA264_20530 0.77 -2.1
4,730,715 + -4.4
4,730,716 - -1.0
4,730,729 + -2.1
4,730,730 - -1.7

Or see this region's nucleotide sequence