Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19780

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19770 and CA264_19775 are separated by 10 nucleotidesCA264_19775 and CA264_19780 are separated by 87 nucleotidesCA264_19780 and CA264_19785 are separated by 388 nucleotides CA264_19770: CA264_19770 - ATPase, at 4,563,164 to 4,563,688 _19770 CA264_19775: CA264_19775 - aldose epimerase, at 4,563,699 to 4,564,574 _19775 CA264_19780: CA264_19780 - hypothetical protein, at 4,564,662 to 4,564,910 _19780 CA264_19785: CA264_19785 - TonB-dependent receptor, at 4,565,299 to 4,567,731 _19785 Position (kb) 4564 4565Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4563.686 kb on + strandat 4563.703 kb on + strandat 4563.704 kb on - strandat 4563.704 kb on - strandat 4563.704 kb on - strandat 4563.704 kb on - strandat 4563.705 kb on + strandat 4563.706 kb on - strandat 4563.706 kb on - strandat 4563.706 kb on - strandat 4563.854 kb on - strand, within CA264_19775at 4563.854 kb on - strand, within CA264_19775at 4563.857 kb on - strand, within CA264_19775at 4563.879 kb on + strand, within CA264_19775at 4563.880 kb on - strand, within CA264_19775at 4563.882 kb on - strand, within CA264_19775at 4563.900 kb on + strand, within CA264_19775at 4563.941 kb on + strand, within CA264_19775at 4563.941 kb on + strand, within CA264_19775at 4563.942 kb on - strand, within CA264_19775at 4564.043 kb on + strand, within CA264_19775at 4564.043 kb on + strand, within CA264_19775at 4564.136 kb on + strand, within CA264_19775at 4564.165 kb on - strand, within CA264_19775at 4564.178 kb on + strand, within CA264_19775at 4564.303 kb on - strand, within CA264_19775at 4564.315 kb on + strand, within CA264_19775at 4564.315 kb on + strand, within CA264_19775at 4564.316 kb on - strand, within CA264_19775at 4564.316 kb on - strand, within CA264_19775at 4564.316 kb on - strand, within CA264_19775at 4564.316 kb on - strand, within CA264_19775at 4564.557 kb on - strandat 4564.589 kb on - strandat 4564.612 kb on + strandat 4564.613 kb on - strandat 4564.613 kb on - strandat 4564.663 kb on + strandat 4564.699 kb on - strand, within CA264_19780at 4564.714 kb on + strand, within CA264_19780at 4564.726 kb on + strand, within CA264_19780at 4564.726 kb on + strand, within CA264_19780at 4564.726 kb on + strand, within CA264_19780at 4564.858 kb on + strand, within CA264_19780at 4564.858 kb on + strand, within CA264_19780at 4564.859 kb on - strand, within CA264_19780at 4564.861 kb on + strand, within CA264_19780at 4564.861 kb on + strand, within CA264_19780at 4564.862 kb on - strand, within CA264_19780at 4564.862 kb on - strand, within CA264_19780at 4564.871 kb on + strand, within CA264_19780at 4564.871 kb on + strand, within CA264_19780at 4564.871 kb on + strand, within CA264_19780at 4564.871 kb on + strand, within CA264_19780at 4564.872 kb on - strand, within CA264_19780at 4564.872 kb on - strand, within CA264_19780at 4564.872 kb on - strand, within CA264_19780at 4564.876 kb on - strand, within CA264_19780at 4564.891 kb on + strandat 4564.891 kb on + strandat 4564.892 kb on - strandat 4564.892 kb on - strandat 4564.892 kb on - strandat 4564.892 kb on - strandat 4564.894 kb on - strandat 4564.894 kb on - strandat 4564.894 kb on - strandat 4564.896 kb on + strandat 4564.896 kb on + strandat 4564.896 kb on + strandat 4564.896 kb on + strandat 4564.897 kb on - strandat 4564.897 kb on - strandat 4564.903 kb on - strandat 4564.927 kb on + strandat 4564.988 kb on + strandat 4564.988 kb on + strandat 4564.988 kb on + strandat 4564.988 kb on + strandat 4564.998 kb on + strandat 4564.998 kb on + strandat 4564.999 kb on - strandat 4564.999 kb on - strandat 4565.008 kb on + strandat 4565.009 kb on - strandat 4565.009 kb on - strandat 4565.102 kb on - strandat 4565.120 kb on - strandat 4565.133 kb on + strandat 4565.145 kb on + strandat 4565.160 kb on + strandat 4565.160 kb on + strandat 4565.182 kb on - strandat 4565.225 kb on - strandat 4565.268 kb on + strandat 4565.279 kb on + strandat 4565.282 kb on + strandat 4565.309 kb on + strandat 4565.309 kb on + strandat 4565.333 kb on + strandat 4565.471 kb on - strandat 4565.501 kb on - strandat 4565.513 kb on + strandat 4565.513 kb on + strandat 4565.519 kb on - strandat 4565.527 kb on + strandat 4565.581 kb on - strand, within CA264_19785at 4565.655 kb on + strand, within CA264_19785

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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4,563,686 + +1.0
4,563,703 + -0.9
4,563,704 - +0.7
4,563,704 - +0.8
4,563,704 - +0.6
4,563,704 - -1.2
4,563,705 + +0.1
4,563,706 - -0.2
4,563,706 - -0.2
4,563,706 - -2.0
4,563,854 - CA264_19775 0.18 +0.2
4,563,854 - CA264_19775 0.18 -0.3
4,563,857 - CA264_19775 0.18 -0.6
4,563,879 + CA264_19775 0.21 -1.3
4,563,880 - CA264_19775 0.21 +0.2
4,563,882 - CA264_19775 0.21 -0.6
4,563,900 + CA264_19775 0.23 -0.3
4,563,941 + CA264_19775 0.28 -0.4
4,563,941 + CA264_19775 0.28 +0.4
4,563,942 - CA264_19775 0.28 -1.8
4,564,043 + CA264_19775 0.39 -1.0
4,564,043 + CA264_19775 0.39 +0.4
4,564,136 + CA264_19775 0.50 +0.8
4,564,165 - CA264_19775 0.53 +0.3
4,564,178 + CA264_19775 0.55 +0.3
4,564,303 - CA264_19775 0.69 -1.4
4,564,315 + CA264_19775 0.70 -0.3
4,564,315 + CA264_19775 0.70 +1.8
4,564,316 - CA264_19775 0.70 +0.1
4,564,316 - CA264_19775 0.70 -0.2
4,564,316 - CA264_19775 0.70 -0.7
4,564,316 - CA264_19775 0.70 -0.2
4,564,557 - -0.8
4,564,589 - -0.1
4,564,612 + -1.3
4,564,613 - -0.0
4,564,613 - +0.3
4,564,663 + +0.0
4,564,699 - CA264_19780 0.15 -1.2
4,564,714 + CA264_19780 0.21 -0.3
4,564,726 + CA264_19780 0.26 +1.2
4,564,726 + CA264_19780 0.26 +0.1
4,564,726 + CA264_19780 0.26 -0.1
4,564,858 + CA264_19780 0.79 -0.4
4,564,858 + CA264_19780 0.79 +0.6
4,564,859 - CA264_19780 0.79 +0.1
4,564,861 + CA264_19780 0.80 +0.5
4,564,861 + CA264_19780 0.80 -0.2
4,564,862 - CA264_19780 0.80 +0.4
4,564,862 - CA264_19780 0.80 -0.3
4,564,871 + CA264_19780 0.84 -2.0
4,564,871 + CA264_19780 0.84 -0.8
4,564,871 + CA264_19780 0.84 +0.6
4,564,871 + CA264_19780 0.84 +0.5
4,564,872 - CA264_19780 0.84 -0.5
4,564,872 - CA264_19780 0.84 +0.7
4,564,872 - CA264_19780 0.84 +0.1
4,564,876 - CA264_19780 0.86 +0.3
4,564,891 + -0.6
4,564,891 + +0.1
4,564,892 - +0.1
4,564,892 - -0.3
4,564,892 - +0.9
4,564,892 - +0.0
4,564,894 - -0.3
4,564,894 - -0.4
4,564,894 - -1.3
4,564,896 + +1.3
4,564,896 + +0.7
4,564,896 + -1.0
4,564,896 + -0.0
4,564,897 - +0.4
4,564,897 - -1.3
4,564,903 - -0.2
4,564,927 + -0.1
4,564,988 + -1.4
4,564,988 + +1.1
4,564,988 + +0.2
4,564,988 + -0.2
4,564,998 + -0.6
4,564,998 + -1.2
4,564,999 - +1.0
4,564,999 - +1.0
4,565,008 + +0.4
4,565,009 - +0.5
4,565,009 - +0.4
4,565,102 - -0.3
4,565,120 - -0.2
4,565,133 + +0.0
4,565,145 + -1.2
4,565,160 + -0.9
4,565,160 + +0.8
4,565,182 - -0.1
4,565,225 - +0.7
4,565,268 + -0.2
4,565,279 + +0.2
4,565,282 + -0.4
4,565,309 + +0.9
4,565,309 + -2.9
4,565,333 + +0.3
4,565,471 - +0.0
4,565,501 - +0.5
4,565,513 + -0.4
4,565,513 + +0.7
4,565,519 - +0.7
4,565,527 + +0.4
4,565,581 - CA264_19785 0.12 +0.2
4,565,655 + CA264_19785 0.15 -0.0

Or see this region's nucleotide sequence