Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18530

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18525 and CA264_18530 are separated by 681 nucleotidesCA264_18530 and CA264_18535 are separated by 642 nucleotides CA264_18525: CA264_18525 - hypothetical protein, at 4,308,751 to 4,309,296 _18525 CA264_18530: CA264_18530 - MarR family transcriptional regulator, at 4,309,978 to 4,310,463 _18530 CA264_18535: CA264_18535 - TonB dependent receptor, at 4,311,106 to 4,313,583 _18535 Position (kb) 4309 4310 4311Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4309.051 kb on - strand, within CA264_18525at 4309.149 kb on - strand, within CA264_18525at 4309.192 kb on + strand, within CA264_18525at 4309.192 kb on + strand, within CA264_18525at 4309.192 kb on + strand, within CA264_18525at 4309.193 kb on - strand, within CA264_18525at 4309.239 kb on + strand, within CA264_18525at 4309.242 kb on - strandat 4309.242 kb on - strandat 4309.286 kb on - strandat 4309.286 kb on - strandat 4309.286 kb on - strandat 4309.407 kb on + strandat 4309.420 kb on + strandat 4309.421 kb on - strandat 4309.421 kb on - strandat 4309.422 kb on + strandat 4309.514 kb on - strandat 4309.514 kb on - strandat 4309.528 kb on - strandat 4309.556 kb on + strandat 4309.623 kb on + strandat 4309.624 kb on - strandat 4309.629 kb on + strandat 4309.630 kb on - strandat 4309.644 kb on - strandat 4309.677 kb on + strandat 4309.710 kb on + strandat 4309.710 kb on + strandat 4309.711 kb on - strandat 4309.712 kb on + strandat 4309.752 kb on - strandat 4309.858 kb on - strandat 4309.964 kb on + strandat 4309.965 kb on - strandat 4309.990 kb on + strandat 4309.990 kb on + strandat 4309.991 kb on - strandat 4309.991 kb on - strandat 4309.996 kb on - strandat 4310.007 kb on + strandat 4310.050 kb on + strand, within CA264_18530at 4310.077 kb on - strand, within CA264_18530at 4310.153 kb on - strand, within CA264_18530at 4310.301 kb on - strand, within CA264_18530at 4310.333 kb on + strand, within CA264_18530at 4310.336 kb on - strand, within CA264_18530at 4310.436 kb on + strandat 4310.439 kb on + strandat 4310.439 kb on + strandat 4310.439 kb on + strandat 4310.440 kb on - strandat 4310.440 kb on - strandat 4310.457 kb on - strandat 4310.457 kb on - strandat 4310.461 kb on + strandat 4310.464 kb on + strandat 4310.589 kb on + strandat 4310.590 kb on - strandat 4310.594 kb on + strandat 4310.615 kb on - strandat 4310.617 kb on + strandat 4310.655 kb on + strandat 4310.658 kb on + strandat 4310.658 kb on + strandat 4310.659 kb on - strandat 4310.757 kb on + strandat 4310.758 kb on - strandat 4310.980 kb on - strandat 4310.980 kb on - strandat 4311.009 kb on + strandat 4311.009 kb on + strandat 4311.013 kb on + strandat 4311.044 kb on - strandat 4311.268 kb on + strandat 4311.268 kb on + strandat 4311.269 kb on - strandat 4311.269 kb on - strandat 4311.273 kb on - strandat 4311.273 kb on - strandat 4311.291 kb on + strandat 4311.371 kb on - strand, within CA264_18535at 4311.371 kb on - strand, within CA264_18535at 4311.413 kb on + strand, within CA264_18535at 4311.416 kb on + strand, within CA264_18535at 4311.417 kb on - strand, within CA264_18535at 4311.459 kb on + strand, within CA264_18535at 4311.459 kb on + strand, within CA264_18535at 4311.460 kb on - strand, within CA264_18535

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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4,309,051 - CA264_18525 0.55 +0.2
4,309,149 - CA264_18525 0.73 -1.5
4,309,192 + CA264_18525 0.81 -1.3
4,309,192 + CA264_18525 0.81 +0.5
4,309,192 + CA264_18525 0.81 +0.6
4,309,193 - CA264_18525 0.81 +0.4
4,309,239 + CA264_18525 0.89 +0.6
4,309,242 - +0.1
4,309,242 - +0.4
4,309,286 - -0.1
4,309,286 - +0.5
4,309,286 - -0.0
4,309,407 + -0.6
4,309,420 + +0.2
4,309,421 - -1.0
4,309,421 - +0.4
4,309,422 + -1.6
4,309,514 - +0.3
4,309,514 - +0.1
4,309,528 - -0.8
4,309,556 + -0.4
4,309,623 + -0.8
4,309,624 - -0.6
4,309,629 + +0.1
4,309,630 - +2.0
4,309,644 - +0.2
4,309,677 + +0.7
4,309,710 + +0.4
4,309,710 + -0.2
4,309,711 - +0.1
4,309,712 + +0.6
4,309,752 - +0.7
4,309,858 - +0.1
4,309,964 + -0.7
4,309,965 - -0.6
4,309,990 + +0.9
4,309,990 + -1.1
4,309,991 - +0.2
4,309,991 - -0.6
4,309,996 - -1.1
4,310,007 + -0.0
4,310,050 + CA264_18530 0.15 +0.6
4,310,077 - CA264_18530 0.20 +0.0
4,310,153 - CA264_18530 0.36 -0.4
4,310,301 - CA264_18530 0.66 -0.8
4,310,333 + CA264_18530 0.73 -0.5
4,310,336 - CA264_18530 0.74 -1.0
4,310,436 + +0.8
4,310,439 + +0.4
4,310,439 + -0.9
4,310,439 + -1.1
4,310,440 - -0.5
4,310,440 - -0.5
4,310,457 - -1.9
4,310,457 - -1.1
4,310,461 + -1.1
4,310,464 + -2.9
4,310,589 + -0.0
4,310,590 - -0.9
4,310,594 + +0.6
4,310,615 - -0.0
4,310,617 + -1.0
4,310,655 + +0.1
4,310,658 + +0.0
4,310,658 + +1.6
4,310,659 - -0.7
4,310,757 + -1.0
4,310,758 - +0.4
4,310,980 - -0.2
4,310,980 - +0.3
4,311,009 + -0.1
4,311,009 + -0.5
4,311,013 + -0.9
4,311,044 - +0.9
4,311,268 + +0.1
4,311,268 + -0.8
4,311,269 - +0.4
4,311,269 - -0.8
4,311,273 - -0.1
4,311,273 - -0.6
4,311,291 + +0.5
4,311,371 - CA264_18535 0.11 +1.4
4,311,371 - CA264_18535 0.11 +1.7
4,311,413 + CA264_18535 0.12 -0.4
4,311,416 + CA264_18535 0.13 +0.5
4,311,417 - CA264_18535 0.13 +1.6
4,311,459 + CA264_18535 0.14 +0.0
4,311,459 + CA264_18535 0.14 -1.7
4,311,460 - CA264_18535 0.14 -0.9

Or see this region's nucleotide sequence