Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17775 and CA264_17780 are separated by 15 nucleotides CA264_17780 and CA264_17785 are separated by 26 nucleotides CA264_17785 and CA264_17790 are separated by 41 nucleotides CA264_17790 and CA264_17795 overlap by 1 nucleotides CA264_17795 and CA264_17800 are separated by 185 nucleotides CA264_17800 and CA264_17805 are separated by 137 nucleotides
CA264_17775: CA264_17775 - isocitrate dehydrogenase, at 4,135,204 to 4,136,202
_17775
CA264_17780: CA264_17780 - hypothetical protein, at 4,136,218 to 4,136,754
_17780
CA264_17785: CA264_17785 - preprotein translocase subunit YajC, at 4,136,781 to 4,137,086
_17785
CA264_17790: CA264_17790 - hypothetical protein, at 4,137,128 to 4,138,066
_17790
CA264_17795: CA264_17795 - dephospho-CoA kinase, at 4,138,066 to 4,138,662
_17795
CA264_17800: CA264_17800 - tRNA-Val, at 4,138,848 to 4,138,922
_17800
CA264_17805: CA264_17805 - tRNA-Val, at 4,139,060 to 4,139,137
_17805
Position (kb)
4137
4138
4139 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4136.204 kb on + strand at 4136.210 kb on - strand at 4136.215 kb on - strand at 4136.215 kb on - strand at 4136.215 kb on - strand at 4136.255 kb on + strand at 4136.429 kb on - strand, within CA264_17780 at 4136.429 kb on - strand, within CA264_17780 at 4136.462 kb on + strand, within CA264_17780 at 4136.637 kb on + strand, within CA264_17780 at 4136.644 kb on - strand, within CA264_17780 at 4136.682 kb on - strand, within CA264_17780 at 4136.773 kb on + strand at 4136.786 kb on + strand at 4136.860 kb on - strand, within CA264_17785 at 4136.951 kb on - strand, within CA264_17785 at 4136.951 kb on - strand, within CA264_17785 at 4136.996 kb on + strand, within CA264_17785 at 4136.997 kb on - strand, within CA264_17785 at 4136.997 kb on - strand, within CA264_17785 at 4137.079 kb on + strand at 4137.084 kb on + strand at 4137.121 kb on - strand at 4137.169 kb on - strand at 4137.729 kb on - strand, within CA264_17790 at 4137.935 kb on - strand, within CA264_17790 at 4137.960 kb on - strand, within CA264_17790 at 4137.960 kb on - strand, within CA264_17790 at 4138.023 kb on + strand at 4138.024 kb on - strand at 4138.024 kb on - strand at 4138.024 kb on - strand at 4138.024 kb on - strand at 4138.066 kb on - strand at 4138.077 kb on - strand at 4138.732 kb on + strand at 4138.732 kb on + strand at 4138.732 kb on + strand at 4138.732 kb on + strand at 4138.741 kb on - strand at 4138.760 kb on + strand at 4138.760 kb on + strand at 4138.762 kb on + strand at 4138.762 kb on + strand at 4138.763 kb on - strand at 4138.763 kb on - strand at 4138.886 kb on + strand, within CA264_17800 at 4138.887 kb on - strand, within CA264_17800 at 4138.915 kb on - strand at 4138.915 kb on - strand at 4139.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 4,136,204 + +0.2 4,136,210 - -2.7 4,136,215 - +0.3 4,136,215 - +0.1 4,136,215 - -1.3 4,136,255 + -0.0 4,136,429 - CA264_17780 0.39 -0.7 4,136,429 - CA264_17780 0.39 -0.7 4,136,462 + CA264_17780 0.45 -1.3 4,136,637 + CA264_17780 0.78 -2.5 4,136,644 - CA264_17780 0.79 -0.7 4,136,682 - CA264_17780 0.86 -0.2 4,136,773 + +0.2 4,136,786 + -1.6 4,136,860 - CA264_17785 0.26 -0.8 4,136,951 - CA264_17785 0.56 -1.2 4,136,951 - CA264_17785 0.56 -0.4 4,136,996 + CA264_17785 0.70 +0.0 4,136,997 - CA264_17785 0.71 -0.4 4,136,997 - CA264_17785 0.71 +0.6 4,137,079 + -1.0 4,137,084 + +2.0 4,137,121 - -0.4 4,137,169 - +0.6 4,137,729 - CA264_17790 0.64 -1.0 4,137,935 - CA264_17790 0.86 -0.8 4,137,960 - CA264_17790 0.89 -0.5 4,137,960 - CA264_17790 0.89 -2.5 4,138,023 + -0.2 4,138,024 - -1.6 4,138,024 - -1.8 4,138,024 - -1.3 4,138,024 - -0.9 4,138,066 - -0.9 4,138,077 - -1.4 4,138,732 + -0.2 4,138,732 + -0.9 4,138,732 + +0.1 4,138,732 + -0.8 4,138,741 - +0.9 4,138,760 + -0.2 4,138,760 + +1.0 4,138,762 + -0.2 4,138,762 + +0.5 4,138,763 - -0.4 4,138,763 - -1.1 4,138,886 + CA264_17800 0.51 +0.4 4,138,887 - CA264_17800 0.52 +1.5 4,138,915 - +0.1 4,138,915 - -0.5 4,139,025 - -0.4
Or see this region's nucleotide sequence