Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15625

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15615 and CA264_15620 are separated by 35 nucleotidesCA264_15620 and CA264_15625 are separated by 106 nucleotidesCA264_15625 and CA264_15630 are separated by 204 nucleotidesCA264_15630 and CA264_15635 are separated by 91 nucleotides CA264_15615: CA264_15615 - hypothetical protein, at 3,651,258 to 3,651,884 _15615 CA264_15620: CA264_15620 - hypothetical protein, at 3,651,920 to 3,652,381 _15620 CA264_15625: CA264_15625 - sterol desaturase, at 3,652,488 to 3,653,270 _15625 CA264_15630: CA264_15630 - haloacid dehalogenase, type II, at 3,653,475 to 3,654,173 _15630 CA264_15635: CA264_15635 - hypothetical protein, at 3,654,265 to 3,655,440 _15635 Position (kb) 3652 3653 3654Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3651.670 kb on + strand, within CA264_15615at 3651.714 kb on + strand, within CA264_15615at 3651.724 kb on - strand, within CA264_15615at 3651.838 kb on - strandat 3651.838 kb on - strandat 3651.896 kb on - strandat 3651.914 kb on + strandat 3651.915 kb on - strandat 3651.974 kb on + strand, within CA264_15620at 3652.023 kb on + strand, within CA264_15620at 3652.023 kb on + strand, within CA264_15620at 3652.024 kb on - strand, within CA264_15620at 3652.090 kb on + strand, within CA264_15620at 3652.114 kb on + strand, within CA264_15620at 3652.175 kb on - strand, within CA264_15620at 3652.194 kb on + strand, within CA264_15620at 3652.194 kb on + strand, within CA264_15620at 3652.196 kb on + strand, within CA264_15620at 3652.197 kb on - strand, within CA264_15620at 3652.270 kb on + strand, within CA264_15620at 3652.316 kb on - strand, within CA264_15620at 3652.369 kb on + strandat 3652.370 kb on - strandat 3652.424 kb on - strandat 3652.425 kb on + strandat 3652.425 kb on + strandat 3652.470 kb on + strandat 3652.470 kb on + strandat 3652.491 kb on + strandat 3652.492 kb on - strandat 3652.547 kb on + strandat 3652.556 kb on + strandat 3652.598 kb on - strand, within CA264_15625at 3652.607 kb on - strand, within CA264_15625at 3652.720 kb on + strand, within CA264_15625at 3652.720 kb on + strand, within CA264_15625at 3652.721 kb on - strand, within CA264_15625at 3652.729 kb on + strand, within CA264_15625at 3652.730 kb on - strand, within CA264_15625at 3652.765 kb on + strand, within CA264_15625at 3652.875 kb on - strand, within CA264_15625at 3652.875 kb on - strand, within CA264_15625at 3652.875 kb on - strand, within CA264_15625at 3652.922 kb on + strand, within CA264_15625at 3652.923 kb on - strand, within CA264_15625at 3652.923 kb on - strand, within CA264_15625at 3652.942 kb on + strand, within CA264_15625at 3652.942 kb on + strand, within CA264_15625at 3652.942 kb on + strand, within CA264_15625at 3652.942 kb on + strand, within CA264_15625at 3652.942 kb on + strand, within CA264_15625at 3652.943 kb on - strand, within CA264_15625at 3652.943 kb on - strand, within CA264_15625at 3652.988 kb on - strand, within CA264_15625at 3653.000 kb on - strand, within CA264_15625at 3653.098 kb on + strand, within CA264_15625at 3653.116 kb on + strand, within CA264_15625at 3653.218 kb on + strandat 3653.219 kb on - strandat 3653.219 kb on - strandat 3653.277 kb on - strandat 3653.277 kb on - strandat 3653.283 kb on + strandat 3653.283 kb on + strandat 3653.284 kb on - strandat 3653.284 kb on - strandat 3653.288 kb on - strandat 3653.294 kb on + strandat 3653.294 kb on + strandat 3653.295 kb on - strandat 3653.296 kb on + strandat 3653.300 kb on + strandat 3653.300 kb on + strandat 3653.301 kb on - strandat 3653.301 kb on - strandat 3653.306 kb on + strandat 3653.307 kb on - strandat 3653.307 kb on - strandat 3653.307 kb on - strandat 3653.307 kb on - strandat 3653.312 kb on + strandat 3653.312 kb on + strandat 3653.423 kb on - strandat 3653.426 kb on + strandat 3653.427 kb on - strandat 3653.427 kb on - strandat 3653.454 kb on + strandat 3653.454 kb on + strandat 3653.530 kb on + strandat 3653.530 kb on + strandat 3653.603 kb on + strand, within CA264_15630at 3653.623 kb on + strand, within CA264_15630at 3653.623 kb on + strand, within CA264_15630at 3653.624 kb on - strand, within CA264_15630at 3653.657 kb on + strand, within CA264_15630at 3653.661 kb on + strand, within CA264_15630at 3653.662 kb on - strand, within CA264_15630at 3653.729 kb on - strand, within CA264_15630at 3653.729 kb on - strand, within CA264_15630at 3653.962 kb on - strand, within CA264_15630at 3654.097 kb on - strand, within CA264_15630at 3654.166 kb on + strandat 3654.182 kb on + strandat 3654.183 kb on - strandat 3654.183 kb on - strandat 3654.238 kb on + strandat 3654.239 kb on - strandat 3654.249 kb on + strandat 3654.249 kb on + strandat 3654.249 kb on + strandat 3654.250 kb on - strandat 3654.250 kb on - strandat 3654.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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3,651,670 + CA264_15615 0.66 -1.0
3,651,714 + CA264_15615 0.73 -0.0
3,651,724 - CA264_15615 0.74 +0.4
3,651,838 - +0.2
3,651,838 - +0.3
3,651,896 - -0.3
3,651,914 + -0.1
3,651,915 - -0.8
3,651,974 + CA264_15620 0.12 -1.4
3,652,023 + CA264_15620 0.22 +0.5
3,652,023 + CA264_15620 0.22 +1.1
3,652,024 - CA264_15620 0.23 -2.7
3,652,090 + CA264_15620 0.37 +0.2
3,652,114 + CA264_15620 0.42 +0.7
3,652,175 - CA264_15620 0.55 +1.1
3,652,194 + CA264_15620 0.59 -0.4
3,652,194 + CA264_15620 0.59 -0.5
3,652,196 + CA264_15620 0.60 -1.4
3,652,197 - CA264_15620 0.60 +0.3
3,652,270 + CA264_15620 0.76 -2.2
3,652,316 - CA264_15620 0.86 -1.9
3,652,369 + -0.6
3,652,370 - -0.1
3,652,424 - -0.6
3,652,425 + -0.6
3,652,425 + +1.0
3,652,470 + +0.2
3,652,470 + -0.6
3,652,491 + -1.2
3,652,492 - -1.7
3,652,547 + -0.3
3,652,556 + -0.9
3,652,598 - CA264_15625 0.14 -0.2
3,652,607 - CA264_15625 0.15 +0.1
3,652,720 + CA264_15625 0.30 -0.2
3,652,720 + CA264_15625 0.30 -0.2
3,652,721 - CA264_15625 0.30 +0.2
3,652,729 + CA264_15625 0.31 -1.3
3,652,730 - CA264_15625 0.31 +0.6
3,652,765 + CA264_15625 0.35 -0.2
3,652,875 - CA264_15625 0.49 +0.0
3,652,875 - CA264_15625 0.49 -3.2
3,652,875 - CA264_15625 0.49 -1.0
3,652,922 + CA264_15625 0.55 -1.2
3,652,923 - CA264_15625 0.56 -1.5
3,652,923 - CA264_15625 0.56 -0.5
3,652,942 + CA264_15625 0.58 +0.4
3,652,942 + CA264_15625 0.58 +0.8
3,652,942 + CA264_15625 0.58 +0.8
3,652,942 + CA264_15625 0.58 +0.2
3,652,942 + CA264_15625 0.58 -2.1
3,652,943 - CA264_15625 0.58 +0.1
3,652,943 - CA264_15625 0.58 -0.6
3,652,988 - CA264_15625 0.64 +0.5
3,653,000 - CA264_15625 0.65 -0.8
3,653,098 + CA264_15625 0.78 -1.9
3,653,116 + CA264_15625 0.80 -0.3
3,653,218 + -1.3
3,653,219 - +0.3
3,653,219 - -1.5
3,653,277 - -0.3
3,653,277 - +0.8
3,653,283 + -0.7
3,653,283 + -0.0
3,653,284 - -1.9
3,653,284 - -1.2
3,653,288 - -1.2
3,653,294 + +0.1
3,653,294 + -0.3
3,653,295 - +0.1
3,653,296 + -0.3
3,653,300 + +0.2
3,653,300 + +0.1
3,653,301 - +0.7
3,653,301 - -0.8
3,653,306 + +0.4
3,653,307 - +0.6
3,653,307 - -0.2
3,653,307 - +0.1
3,653,307 - +0.0
3,653,312 + +0.0
3,653,312 + -0.4
3,653,423 - -0.6
3,653,426 + +1.2
3,653,427 - -0.2
3,653,427 - +1.5
3,653,454 + +2.2
3,653,454 + -0.6
3,653,530 + +0.4
3,653,530 + +0.2
3,653,603 + CA264_15630 0.18 -0.4
3,653,623 + CA264_15630 0.21 -0.7
3,653,623 + CA264_15630 0.21 -0.2
3,653,624 - CA264_15630 0.21 +0.1
3,653,657 + CA264_15630 0.26 -0.5
3,653,661 + CA264_15630 0.27 -2.5
3,653,662 - CA264_15630 0.27 -0.0
3,653,729 - CA264_15630 0.36 -1.3
3,653,729 - CA264_15630 0.36 -0.6
3,653,962 - CA264_15630 0.70 -0.2
3,654,097 - CA264_15630 0.89 +0.8
3,654,166 + +0.1
3,654,182 + +1.0
3,654,183 - -0.2
3,654,183 - +0.7
3,654,238 + -0.5
3,654,239 - +0.4
3,654,249 + -0.1
3,654,249 + -0.0
3,654,249 + +1.0
3,654,250 - -0.9
3,654,250 - -2.2
3,654,250 - +0.1

Or see this region's nucleotide sequence