Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15375 and CA264_15380 are separated by 242 nucleotides CA264_15380 and CA264_15385 are separated by 119 nucleotides CA264_15385 and CA264_15390 are separated by 93 nucleotides
CA264_15375: CA264_15375 - EamA family transporter, at 3,603,671 to 3,604,540
_15375
CA264_15380: CA264_15380 - RecX family transcriptional regulator, at 3,604,783 to 3,605,268
_15380
CA264_15385: CA264_15385 - TIGR02391 family protein, at 3,605,388 to 3,606,188
_15385
CA264_15390: CA264_15390 - hypothetical protein, at 3,606,282 to 3,606,917
_15390
Position (kb)
3605
3606
3607 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3604.463 kb on + strand at 3604.542 kb on + strand at 3604.542 kb on + strand at 3604.543 kb on - strand at 3604.543 kb on - strand at 3604.543 kb on - strand at 3604.543 kb on - strand at 3604.543 kb on - strand at 3604.543 kb on - strand at 3604.543 kb on - strand at 3604.543 kb on - strand at 3604.544 kb on + strand at 3604.544 kb on + strand at 3604.544 kb on + strand at 3604.545 kb on - strand at 3604.545 kb on - strand at 3604.547 kb on - strand at 3604.559 kb on + strand at 3604.559 kb on + strand at 3604.572 kb on - strand at 3604.668 kb on - strand at 3604.711 kb on + strand at 3604.711 kb on + strand at 3604.714 kb on - strand at 3604.736 kb on + strand at 3604.770 kb on + strand at 3604.777 kb on - strand at 3604.777 kb on - strand at 3604.777 kb on - strand at 3604.811 kb on - strand at 3604.894 kb on + strand, within CA264_15380 at 3604.894 kb on + strand, within CA264_15380 at 3604.987 kb on + strand, within CA264_15380 at 3604.987 kb on + strand, within CA264_15380 at 3604.988 kb on - strand, within CA264_15380 at 3605.002 kb on + strand, within CA264_15380 at 3605.003 kb on - strand, within CA264_15380 at 3605.035 kb on - strand, within CA264_15380 at 3605.047 kb on - strand, within CA264_15380 at 3605.110 kb on + strand, within CA264_15380 at 3605.127 kb on - strand, within CA264_15380 at 3605.127 kb on - strand, within CA264_15380 at 3605.197 kb on + strand, within CA264_15380 at 3605.198 kb on - strand, within CA264_15380 at 3605.280 kb on - strand at 3605.287 kb on - strand at 3605.325 kb on + strand at 3605.325 kb on + strand at 3605.356 kb on + strand at 3605.363 kb on + strand at 3605.367 kb on + strand at 3605.368 kb on - strand at 3605.368 kb on - strand at 3605.377 kb on + strand at 3605.378 kb on - strand at 3605.378 kb on - strand at 3605.378 kb on - strand at 3605.378 kb on - strand at 3605.378 kb on - strand at 3605.378 kb on - strand at 3605.384 kb on + strand at 3605.385 kb on - strand at 3605.401 kb on + strand at 3605.424 kb on - strand at 3605.430 kb on - strand at 3605.430 kb on - strand at 3605.450 kb on - strand at 3605.456 kb on + strand at 3605.503 kb on + strand, within CA264_15385 at 3605.504 kb on - strand, within CA264_15385 at 3605.509 kb on + strand, within CA264_15385 at 3605.510 kb on - strand, within CA264_15385 at 3605.632 kb on + strand, within CA264_15385 at 3605.711 kb on - strand, within CA264_15385 at 3605.733 kb on - strand, within CA264_15385 at 3605.733 kb on - strand, within CA264_15385 at 3605.789 kb on + strand, within CA264_15385 at 3605.789 kb on + strand, within CA264_15385 at 3605.790 kb on - strand, within CA264_15385 at 3605.855 kb on + strand, within CA264_15385 at 3605.855 kb on + strand, within CA264_15385 at 3605.856 kb on - strand, within CA264_15385 at 3605.870 kb on + strand, within CA264_15385 at 3605.876 kb on + strand, within CA264_15385 at 3605.877 kb on - strand, within CA264_15385 at 3605.897 kb on + strand, within CA264_15385 at 3605.909 kb on + strand, within CA264_15385 at 3605.909 kb on + strand, within CA264_15385 at 3605.909 kb on + strand, within CA264_15385 at 3605.910 kb on - strand, within CA264_15385 at 3605.929 kb on + strand, within CA264_15385 at 3605.929 kb on + strand, within CA264_15385 at 3605.933 kb on - strand, within CA264_15385 at 3605.933 kb on - strand, within CA264_15385 at 3605.985 kb on - strand, within CA264_15385 at 3606.053 kb on + strand, within CA264_15385 at 3606.053 kb on + strand, within CA264_15385 at 3606.053 kb on + strand, within CA264_15385 at 3606.053 kb on + strand, within CA264_15385 at 3606.054 kb on - strand, within CA264_15385 at 3606.057 kb on + strand, within CA264_15385 at 3606.057 kb on + strand, within CA264_15385 at 3606.058 kb on - strand, within CA264_15385 at 3606.058 kb on - strand, within CA264_15385 at 3606.060 kb on - strand, within CA264_15385 at 3606.069 kb on - strand, within CA264_15385 at 3606.106 kb on + strand, within CA264_15385 at 3606.107 kb on - strand, within CA264_15385 at 3606.131 kb on - strand at 3606.131 kb on - strand at 3606.133 kb on + strand at 3606.134 kb on - strand at 3606.134 kb on - strand at 3606.142 kb on + strand at 3606.143 kb on - strand at 3606.143 kb on - strand at 3606.216 kb on - strand at 3606.220 kb on + strand at 3606.270 kb on - strand at 3606.270 kb on - strand at 3606.270 kb on - strand at 3606.272 kb on + strand at 3606.272 kb on + strand at 3606.272 kb on + strand at 3606.272 kb on + strand at 3606.273 kb on - strand at 3606.277 kb on - strand at 3606.281 kb on + strand at 3606.281 kb on + strand at 3606.281 kb on + strand at 3606.281 kb on + strand at 3606.282 kb on - strand at 3606.282 kb on - strand at 3606.340 kb on - strand at 3606.407 kb on - strand, within CA264_15390 at 3606.451 kb on - strand, within CA264_15390 at 3606.456 kb on - strand, within CA264_15390 at 3606.562 kb on + strand, within CA264_15390 at 3606.576 kb on - strand, within CA264_15390 at 3606.585 kb on + strand, within CA264_15390 at 3606.607 kb on - strand, within CA264_15390 at 3606.631 kb on + strand, within CA264_15390 at 3606.631 kb on + strand, within CA264_15390 at 3606.641 kb on + strand, within CA264_15390 at 3606.641 kb on + strand, within CA264_15390 at 3606.649 kb on + strand, within CA264_15390 at 3606.649 kb on + strand, within CA264_15390 at 3606.649 kb on + strand, within CA264_15390 at 3606.649 kb on + strand, within CA264_15390 at 3606.650 kb on - strand, within CA264_15390 at 3606.658 kb on - strand, within CA264_15390 at 3606.679 kb on + strand, within CA264_15390 at 3606.679 kb on + strand, within CA264_15390 at 3606.680 kb on - strand, within CA264_15390 at 3606.680 kb on - strand, within CA264_15390 at 3606.683 kb on + strand, within CA264_15390 at 3606.683 kb on + strand, within CA264_15390 at 3606.686 kb on + strand, within CA264_15390 at 3606.820 kb on - strand, within CA264_15390 at 3606.825 kb on + strand, within CA264_15390 at 3606.825 kb on + strand, within CA264_15390 at 3606.826 kb on - strand, within CA264_15390 at 3606.826 kb on - strand, within CA264_15390 at 3606.826 kb on - strand, within CA264_15390 at 3606.826 kb on - strand, within CA264_15390 at 3606.848 kb on - strand, within CA264_15390 at 3606.865 kb on - strand at 3606.865 kb on - strand at 3606.909 kb on - strand at 3606.916 kb on - strand at 3606.916 kb on - strand at 3606.921 kb on + strand at 3606.921 kb on + strand at 3606.922 kb on - strand at 3606.922 kb on - strand at 3607.016 kb on - strand at 3607.023 kb on + strand at 3607.024 kb on - strand at 3607.046 kb on + strand at 3607.046 kb on + strand at 3607.047 kb on - strand at 3607.070 kb on + strand at 3607.090 kb on - strand at 3607.090 kb on - strand at 3607.104 kb on + strand at 3607.116 kb on - strand at 3607.122 kb on + strand at 3607.122 kb on + strand at 3607.123 kb on - strand at 3607.123 kb on - strand at 3607.146 kb on + strand at 3607.146 kb on + strand at 3607.157 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 3,604,463 + -1.3 3,604,542 + -1.4 3,604,542 + -0.5 3,604,543 - -0.2 3,604,543 - -0.1 3,604,543 - -0.4 3,604,543 - -0.4 3,604,543 - -1.3 3,604,543 - -0.3 3,604,543 - -1.2 3,604,543 - -0.8 3,604,544 + -0.1 3,604,544 + -0.0 3,604,544 + +1.7 3,604,545 - +2.0 3,604,545 - -1.2 3,604,547 - +0.6 3,604,559 + -1.0 3,604,559 + +0.2 3,604,572 - -0.4 3,604,668 - +0.6 3,604,711 + -2.2 3,604,711 + -1.3 3,604,714 - -1.4 3,604,736 + -0.6 3,604,770 + +0.1 3,604,777 - +0.6 3,604,777 - -0.2 3,604,777 - -1.1 3,604,811 - -0.0 3,604,894 + CA264_15380 0.23 -1.1 3,604,894 + CA264_15380 0.23 -0.5 3,604,987 + CA264_15380 0.42 +0.4 3,604,987 + CA264_15380 0.42 -0.7 3,604,988 - CA264_15380 0.42 +0.8 3,605,002 + CA264_15380 0.45 +0.2 3,605,003 - CA264_15380 0.45 -0.4 3,605,035 - CA264_15380 0.52 -0.3 3,605,047 - CA264_15380 0.54 +0.9 3,605,110 + CA264_15380 0.67 +0.0 3,605,127 - CA264_15380 0.71 -1.5 3,605,127 - CA264_15380 0.71 +0.1 3,605,197 + CA264_15380 0.85 -0.4 3,605,198 - CA264_15380 0.85 -0.9 3,605,280 - +0.4 3,605,287 - +0.2 3,605,325 + +0.2 3,605,325 + -0.6 3,605,356 + -1.2 3,605,363 + +0.1 3,605,367 + -1.3 3,605,368 - -0.9 3,605,368 - +0.6 3,605,377 + +0.3 3,605,378 - +0.0 3,605,378 - -0.1 3,605,378 - +0.1 3,605,378 - +1.3 3,605,378 - -0.6 3,605,378 - +2.1 3,605,384 + -0.1 3,605,385 - -0.8 3,605,401 + -0.1 3,605,424 - -0.1 3,605,430 - -1.7 3,605,430 - +0.6 3,605,450 - -1.0 3,605,456 + +0.1 3,605,503 + CA264_15385 0.14 -2.7 3,605,504 - CA264_15385 0.14 +1.5 3,605,509 + CA264_15385 0.15 -0.2 3,605,510 - CA264_15385 0.15 -2.2 3,605,632 + CA264_15385 0.30 -0.9 3,605,711 - CA264_15385 0.40 -1.3 3,605,733 - CA264_15385 0.43 -0.6 3,605,733 - CA264_15385 0.43 -0.9 3,605,789 + CA264_15385 0.50 -1.6 3,605,789 + CA264_15385 0.50 +0.0 3,605,790 - CA264_15385 0.50 -0.2 3,605,855 + CA264_15385 0.58 -0.3 3,605,855 + CA264_15385 0.58 -2.5 3,605,856 - CA264_15385 0.58 -0.6 3,605,870 + CA264_15385 0.60 -0.3 3,605,876 + CA264_15385 0.61 -0.0 3,605,877 - CA264_15385 0.61 -0.7 3,605,897 + CA264_15385 0.64 +0.0 3,605,909 + CA264_15385 0.65 -0.5 3,605,909 + CA264_15385 0.65 +0.4 3,605,909 + CA264_15385 0.65 +0.2 3,605,910 - CA264_15385 0.65 -0.3 3,605,929 + CA264_15385 0.68 -0.0 3,605,929 + CA264_15385 0.68 -1.6 3,605,933 - CA264_15385 0.68 -0.2 3,605,933 - CA264_15385 0.68 -0.4 3,605,985 - CA264_15385 0.75 -0.6 3,606,053 + CA264_15385 0.83 -0.4 3,606,053 + CA264_15385 0.83 -1.0 3,606,053 + CA264_15385 0.83 +2.1 3,606,053 + CA264_15385 0.83 -0.7 3,606,054 - CA264_15385 0.83 -1.8 3,606,057 + CA264_15385 0.84 -0.9 3,606,057 + CA264_15385 0.84 +0.4 3,606,058 - CA264_15385 0.84 +0.4 3,606,058 - CA264_15385 0.84 -0.7 3,606,060 - CA264_15385 0.84 +0.4 3,606,069 - CA264_15385 0.85 -0.2 3,606,106 + CA264_15385 0.90 +0.0 3,606,107 - CA264_15385 0.90 -1.5 3,606,131 - -1.0 3,606,131 - -0.5 3,606,133 + -1.6 3,606,134 - -1.0 3,606,134 - -1.3 3,606,142 + -1.4 3,606,143 - -0.3 3,606,143 - +0.5 3,606,216 - -0.3 3,606,220 + -0.9 3,606,270 - -0.6 3,606,270 - +0.0 3,606,270 - -0.6 3,606,272 + +0.8 3,606,272 + +0.2 3,606,272 + -1.0 3,606,272 + +0.1 3,606,273 - -0.1 3,606,277 - +0.7 3,606,281 + -0.1 3,606,281 + -0.4 3,606,281 + -0.1 3,606,281 + +0.6 3,606,282 - -0.1 3,606,282 - -0.3 3,606,340 - -0.1 3,606,407 - CA264_15390 0.20 -1.1 3,606,451 - CA264_15390 0.27 -0.2 3,606,456 - CA264_15390 0.27 +0.0 3,606,562 + CA264_15390 0.44 -0.6 3,606,576 - CA264_15390 0.46 +0.7 3,606,585 + CA264_15390 0.48 -0.3 3,606,607 - CA264_15390 0.51 +0.1 3,606,631 + CA264_15390 0.55 -0.3 3,606,631 + CA264_15390 0.55 -0.8 3,606,641 + CA264_15390 0.56 +0.4 3,606,641 + CA264_15390 0.56 -0.1 3,606,649 + CA264_15390 0.58 -1.4 3,606,649 + CA264_15390 0.58 +0.4 3,606,649 + CA264_15390 0.58 -0.2 3,606,649 + CA264_15390 0.58 +0.0 3,606,650 - CA264_15390 0.58 -0.0 3,606,658 - CA264_15390 0.59 +0.4 3,606,679 + CA264_15390 0.62 -0.1 3,606,679 + CA264_15390 0.62 +0.4 3,606,680 - CA264_15390 0.63 +0.2 3,606,680 - CA264_15390 0.63 -0.4 3,606,683 + CA264_15390 0.63 -0.4 3,606,683 + CA264_15390 0.63 -0.7 3,606,686 + CA264_15390 0.64 -0.6 3,606,820 - CA264_15390 0.85 -1.1 3,606,825 + CA264_15390 0.85 -1.1 3,606,825 + CA264_15390 0.85 +0.0 3,606,826 - CA264_15390 0.86 +0.4 3,606,826 - CA264_15390 0.86 -0.4 3,606,826 - CA264_15390 0.86 +0.5 3,606,826 - CA264_15390 0.86 +0.3 3,606,848 - CA264_15390 0.89 -0.3 3,606,865 - +0.3 3,606,865 - -0.4 3,606,909 - +0.1 3,606,916 - -0.4 3,606,916 - +0.0 3,606,921 + +0.2 3,606,921 + +1.1 3,606,922 - +0.4 3,606,922 - -0.3 3,607,016 - +1.3 3,607,023 + +0.4 3,607,024 - +1.3 3,607,046 + +0.2 3,607,046 + -0.0 3,607,047 - -0.1 3,607,070 + -0.7 3,607,090 - +0.7 3,607,090 - +0.0 3,607,104 + -0.7 3,607,116 - +1.4 3,607,122 + +0.6 3,607,122 + +1.1 3,607,123 - -1.3 3,607,123 - +1.0 3,607,146 + -2.8 3,607,146 + -0.8 3,607,157 + +0.3
Or see this region's nucleotide sequence