Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14920 and CA264_14925 are separated by 331 nucleotides CA264_14925 and CA264_14930 are separated by 231 nucleotides CA264_14930 and CA264_14935 are separated by 4 nucleotides CA264_14935 and CA264_14940 are separated by 97 nucleotides CA264_14940 and CA264_14945 are separated by 200 nucleotides
CA264_14920: CA264_14920 - hypothetical protein, at 3,507,384 to 3,507,815
_14920
CA264_14925: CA264_14925 - hypothetical protein, at 3,508,147 to 3,508,485
_14925
CA264_14930: CA264_14930 - hypothetical protein, at 3,508,717 to 3,509,040
_14930
CA264_14935: CA264_14935 - sec-independent protein translocase TatC, at 3,509,045 to 3,509,437
_14935
CA264_14940: CA264_14940 - hypothetical protein, at 3,509,535 to 3,509,795
_14940
CA264_14945: CA264_14945 - RNA polymerase subunit sigma-24, at 3,509,996 to 3,510,598
_14945
Position (kb)
3508
3509
3510 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3507.895 kb on + strand at 3507.899 kb on + strand at 3507.899 kb on + strand at 3507.900 kb on - strand at 3507.900 kb on - strand at 3507.999 kb on - strand at 3508.006 kb on - strand at 3508.033 kb on + strand at 3508.123 kb on + strand at 3508.237 kb on + strand, within CA264_14925 at 3508.242 kb on - strand, within CA264_14925 at 3508.278 kb on + strand, within CA264_14925 at 3508.342 kb on + strand, within CA264_14925 at 3508.431 kb on + strand, within CA264_14925 at 3508.498 kb on + strand at 3508.499 kb on - strand at 3508.563 kb on + strand at 3508.641 kb on + strand at 3508.641 kb on + strand at 3508.641 kb on + strand at 3508.641 kb on + strand at 3508.642 kb on - strand at 3508.642 kb on - strand at 3508.642 kb on - strand at 3508.642 kb on - strand at 3508.642 kb on - strand at 3508.691 kb on - strand at 3508.695 kb on + strand at 3508.696 kb on - strand at 3508.739 kb on + strand at 3508.778 kb on - strand, within CA264_14930 at 3508.778 kb on - strand, within CA264_14930 at 3508.806 kb on + strand, within CA264_14930 at 3508.867 kb on - strand, within CA264_14930 at 3508.934 kb on - strand, within CA264_14930 at 3509.038 kb on + strand at 3509.039 kb on - strand at 3509.092 kb on + strand, within CA264_14935 at 3509.092 kb on + strand, within CA264_14935 at 3509.093 kb on - strand, within CA264_14935 at 3509.099 kb on + strand, within CA264_14935 at 3509.099 kb on + strand, within CA264_14935 at 3509.100 kb on - strand, within CA264_14935 at 3509.187 kb on - strand, within CA264_14935 at 3509.226 kb on - strand, within CA264_14935 at 3509.435 kb on + strand at 3509.618 kb on + strand, within CA264_14940 at 3509.722 kb on + strand, within CA264_14940 at 3509.735 kb on + strand, within CA264_14940 at 3509.736 kb on - strand, within CA264_14940 at 3509.748 kb on - strand, within CA264_14940 at 3509.787 kb on + strand at 3509.788 kb on - strand at 3509.788 kb on - strand at 3509.791 kb on + strand at 3509.792 kb on - strand at 3509.792 kb on - strand at 3509.793 kb on + strand at 3509.794 kb on - strand at 3509.802 kb on + strand at 3509.865 kb on - strand at 3509.889 kb on - strand at 3509.900 kb on + strand at 3509.900 kb on + strand at 3509.956 kb on + strand at 3509.956 kb on + strand at 3509.956 kb on + strand at 3509.957 kb on - strand at 3509.963 kb on + strand at 3509.971 kb on + strand at 3509.972 kb on - strand at 3510.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 3,507,895 + -1.7 3,507,899 + +0.0 3,507,899 + +0.3 3,507,900 - +0.3 3,507,900 - -0.2 3,507,999 - -1.0 3,508,006 - +0.4 3,508,033 + +1.0 3,508,123 + +0.2 3,508,237 + CA264_14925 0.27 -1.0 3,508,242 - CA264_14925 0.28 +0.9 3,508,278 + CA264_14925 0.39 -3.3 3,508,342 + CA264_14925 0.58 -1.7 3,508,431 + CA264_14925 0.84 +2.4 3,508,498 + -0.5 3,508,499 - -0.1 3,508,563 + -0.3 3,508,641 + +0.6 3,508,641 + -2.9 3,508,641 + -0.4 3,508,641 + +0.2 3,508,642 - +0.6 3,508,642 - -1.1 3,508,642 - +0.1 3,508,642 - -0.3 3,508,642 - +0.1 3,508,691 - +0.9 3,508,695 + -0.3 3,508,696 - -0.9 3,508,739 + -0.4 3,508,778 - CA264_14930 0.19 +0.4 3,508,778 - CA264_14930 0.19 +0.0 3,508,806 + CA264_14930 0.27 -0.5 3,508,867 - CA264_14930 0.46 -1.0 3,508,934 - CA264_14930 0.67 -2.1 3,509,038 + +0.6 3,509,039 - -1.7 3,509,092 + CA264_14935 0.12 +0.1 3,509,092 + CA264_14935 0.12 +1.4 3,509,093 - CA264_14935 0.12 -2.0 3,509,099 + CA264_14935 0.14 -0.2 3,509,099 + CA264_14935 0.14 +0.3 3,509,100 - CA264_14935 0.14 -0.8 3,509,187 - CA264_14935 0.36 -1.5 3,509,226 - CA264_14935 0.46 -0.5 3,509,435 + +0.5 3,509,618 + CA264_14940 0.32 -0.9 3,509,722 + CA264_14940 0.72 -0.7 3,509,735 + CA264_14940 0.77 -0.2 3,509,736 - CA264_14940 0.77 +0.1 3,509,748 - CA264_14940 0.82 -0.1 3,509,787 + +0.2 3,509,788 - -0.2 3,509,788 - +0.6 3,509,791 + -0.4 3,509,792 - -0.8 3,509,792 - -1.4 3,509,793 + -2.0 3,509,794 - -2.4 3,509,802 + -0.4 3,509,865 - -0.7 3,509,889 - -0.5 3,509,900 + -1.0 3,509,900 + +0.7 3,509,956 + -0.9 3,509,956 + -0.4 3,509,956 + -2.1 3,509,957 - -0.5 3,509,963 + +1.1 3,509,971 + +0.9 3,509,972 - -1.6 3,510,031 - +0.4
Or see this region's nucleotide sequence