Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14500

Experiment: m.b. Vancomycin 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14490 and CA264_14495 are separated by 18 nucleotidesCA264_14495 and CA264_14500 are separated by 157 nucleotidesCA264_14500 and CA264_14505 are separated by 52 nucleotides CA264_14490: CA264_14490 - polysaccharide biosynthesis protein, at 3,400,022 to 3,401,515 _14490 CA264_14495: CA264_14495 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 3,401,534 to 3,401,983 _14495 CA264_14500: CA264_14500 - nucleotidyltransferase, at 3,402,141 to 3,403,148 _14500 CA264_14505: CA264_14505 - hypothetical protein, at 3,403,201 to 3,404,910 _14505 Position (kb) 3402 3403 3404Strain fitness (log2 ratio) -3 -2 -1 0 1at 3401.516 kb on + strandat 3401.518 kb on + strandat 3401.522 kb on + strandat 3401.526 kb on + strandat 3401.530 kb on + strandat 3401.981 kb on + strandat 3402.026 kb on + strandat 3402.086 kb on + strandat 3402.122 kb on + strandat 3403.149 kb on + strandat 3403.149 kb on + strandat 3403.150 kb on - strandat 3403.161 kb on + strandat 3403.162 kb on - strandat 3403.165 kb on + strandat 3403.178 kb on + strandat 3403.178 kb on + strandat 3403.342 kb on + strandat 3403.343 kb on - strandat 3403.348 kb on - strandat 3403.394 kb on - strand, within CA264_14505at 3403.519 kb on + strand, within CA264_14505at 3403.519 kb on + strand, within CA264_14505at 3403.520 kb on - strand, within CA264_14505at 3403.522 kb on + strand, within CA264_14505at 3403.523 kb on - strand, within CA264_14505at 3403.523 kb on - strand, within CA264_14505at 3403.526 kb on - strand, within CA264_14505at 3403.564 kb on + strand, within CA264_14505at 3403.648 kb on + strand, within CA264_14505at 3403.687 kb on + strand, within CA264_14505at 3403.688 kb on - strand, within CA264_14505at 3403.852 kb on + strand, within CA264_14505at 3403.853 kb on - strand, within CA264_14505at 3403.853 kb on - strand, within CA264_14505at 3403.974 kb on + strand, within CA264_14505at 3403.975 kb on - strand, within CA264_14505at 3403.975 kb on - strand, within CA264_14505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
remove
3,401,516 + +0.0
3,401,518 + +1.4
3,401,522 + +0.7
3,401,526 + -0.6
3,401,530 + -0.1
3,401,981 + -0.7
3,402,026 + +1.7
3,402,086 + -1.4
3,402,122 + -0.7
3,403,149 + +0.6
3,403,149 + +0.2
3,403,150 - -3.7
3,403,161 + -0.1
3,403,162 - -2.6
3,403,165 + -0.6
3,403,178 + -0.7
3,403,178 + +0.2
3,403,342 + -0.7
3,403,343 - -1.1
3,403,348 - -2.5
3,403,394 - CA264_14505 0.11 -1.4
3,403,519 + CA264_14505 0.19 -0.4
3,403,519 + CA264_14505 0.19 -0.4
3,403,520 - CA264_14505 0.19 -0.3
3,403,522 + CA264_14505 0.19 -0.9
3,403,523 - CA264_14505 0.19 -2.2
3,403,523 - CA264_14505 0.19 -0.2
3,403,526 - CA264_14505 0.19 +1.4
3,403,564 + CA264_14505 0.21 +0.3
3,403,648 + CA264_14505 0.26 +0.6
3,403,687 + CA264_14505 0.28 -1.3
3,403,688 - CA264_14505 0.28 -1.7
3,403,852 + CA264_14505 0.38 -0.1
3,403,853 - CA264_14505 0.38 +0.9
3,403,853 - CA264_14505 0.38 +0.7
3,403,974 + CA264_14505 0.45 -0.8
3,403,975 - CA264_14505 0.45 -0.9
3,403,975 - CA264_14505 0.45 -1.5

Or see this region's nucleotide sequence