Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14120 and CA264_14125 are separated by 133 nucleotides CA264_14125 and CA264_14130 are separated by 84 nucleotides CA264_14130 and CA264_14135 are separated by 201 nucleotides
CA264_14120: CA264_14120 - hypothetical protein, at 3,316,095 to 3,316,766
_14120
CA264_14125: CA264_14125 - endonuclease V, at 3,316,900 to 3,317,583
_14125
CA264_14130: CA264_14130 - GxxExxY protein, at 3,317,668 to 3,318,048
_14130
CA264_14135: CA264_14135 - ATP-dependent chaperone ClpB, at 3,318,250 to 3,320,868
_14135
Position (kb)
3317
3318
3319 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3316.780 kb on + strand at 3316.780 kb on + strand at 3316.819 kb on + strand at 3316.820 kb on - strand at 3316.832 kb on + strand at 3316.842 kb on + strand at 3316.843 kb on - strand at 3316.843 kb on - strand at 3316.893 kb on + strand at 3316.907 kb on - strand at 3316.909 kb on + strand at 3316.910 kb on - strand at 3316.989 kb on + strand, within CA264_14125 at 3316.990 kb on - strand, within CA264_14125 at 3317.050 kb on - strand, within CA264_14125 at 3317.079 kb on + strand, within CA264_14125 at 3317.079 kb on + strand, within CA264_14125 at 3317.082 kb on - strand, within CA264_14125 at 3317.150 kb on - strand, within CA264_14125 at 3317.237 kb on + strand, within CA264_14125 at 3317.333 kb on + strand, within CA264_14125 at 3317.439 kb on + strand, within CA264_14125 at 3317.439 kb on + strand, within CA264_14125 at 3317.440 kb on - strand, within CA264_14125 at 3317.468 kb on + strand, within CA264_14125 at 3317.519 kb on - strand at 3317.521 kb on - strand at 3317.554 kb on + strand at 3317.555 kb on - strand at 3317.611 kb on - strand at 3317.657 kb on - strand at 3317.666 kb on + strand at 3317.689 kb on + strand at 3317.690 kb on - strand at 3317.699 kb on + strand at 3317.700 kb on - strand at 3317.700 kb on - strand at 3317.700 kb on - strand at 3317.700 kb on - strand at 3317.721 kb on + strand, within CA264_14130 at 3317.721 kb on + strand, within CA264_14130 at 3317.825 kb on + strand, within CA264_14130 at 3317.830 kb on + strand, within CA264_14130 at 3317.830 kb on + strand, within CA264_14130 at 3317.830 kb on + strand, within CA264_14130 at 3317.831 kb on - strand, within CA264_14130 at 3317.832 kb on + strand, within CA264_14130 at 3317.832 kb on + strand, within CA264_14130 at 3317.832 kb on + strand, within CA264_14130 at 3317.833 kb on - strand, within CA264_14130 at 3317.833 kb on - strand, within CA264_14130 at 3317.833 kb on - strand, within CA264_14130 at 3317.833 kb on - strand, within CA264_14130 at 3317.841 kb on - strand, within CA264_14130 at 3317.907 kb on - strand, within CA264_14130 at 3317.930 kb on + strand, within CA264_14130 at 3318.157 kb on + strand at 3318.193 kb on + strand at 3318.204 kb on - strand at 3318.206 kb on - strand at 3318.215 kb on - strand at 3318.220 kb on + strand at 3318.249 kb on + strand at 3318.250 kb on - strand at 3318.259 kb on - strand at 3318.261 kb on + strand at 3318.261 kb on + strand at 3318.261 kb on + strand at 3318.261 kb on + strand at 3318.262 kb on - strand at 3318.266 kb on - strand at 3318.266 kb on - strand at 3318.266 kb on - strand at 3318.268 kb on - strand at 3318.268 kb on - strand at 3318.268 kb on - strand at 3318.308 kb on + strand at 3318.384 kb on - strand at 3318.384 kb on - strand at 3318.452 kb on + strand at 3318.515 kb on + strand, within CA264_14135 at 3318.556 kb on + strand, within CA264_14135 at 3318.557 kb on - strand, within CA264_14135 at 3318.557 kb on - strand, within CA264_14135 at 3318.717 kb on + strand, within CA264_14135 at 3318.717 kb on + strand, within CA264_14135 at 3318.877 kb on - strand, within CA264_14135 at 3318.996 kb on + strand, within CA264_14135 at 3318.996 kb on + strand, within CA264_14135 at 3318.997 kb on - strand, within CA264_14135 at 3318.997 kb on - strand, within CA264_14135
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 3,316,780 + -1.1 3,316,780 + -0.7 3,316,819 + -0.5 3,316,820 - +0.1 3,316,832 + -0.1 3,316,842 + -0.1 3,316,843 - +1.0 3,316,843 - -0.2 3,316,893 + +1.3 3,316,907 - +0.4 3,316,909 + -0.5 3,316,910 - -0.8 3,316,989 + CA264_14125 0.13 +0.2 3,316,990 - CA264_14125 0.13 -0.0 3,317,050 - CA264_14125 0.22 -0.6 3,317,079 + CA264_14125 0.26 +1.2 3,317,079 + CA264_14125 0.26 +0.7 3,317,082 - CA264_14125 0.27 -2.2 3,317,150 - CA264_14125 0.37 -0.3 3,317,237 + CA264_14125 0.49 +0.1 3,317,333 + CA264_14125 0.63 +0.3 3,317,439 + CA264_14125 0.79 -0.1 3,317,439 + CA264_14125 0.79 -0.8 3,317,440 - CA264_14125 0.79 +0.1 3,317,468 + CA264_14125 0.83 -0.9 3,317,519 - +0.0 3,317,521 - -0.7 3,317,554 + -0.3 3,317,555 - +0.2 3,317,611 - -0.4 3,317,657 - +0.6 3,317,666 + +0.3 3,317,689 + -0.9 3,317,690 - -1.2 3,317,699 + +0.7 3,317,700 - -0.8 3,317,700 - -0.5 3,317,700 - -1.5 3,317,700 - +0.4 3,317,721 + CA264_14130 0.14 -0.6 3,317,721 + CA264_14130 0.14 -0.3 3,317,825 + CA264_14130 0.41 +0.3 3,317,830 + CA264_14130 0.43 -1.9 3,317,830 + CA264_14130 0.43 -0.0 3,317,830 + CA264_14130 0.43 +0.0 3,317,831 - CA264_14130 0.43 -0.4 3,317,832 + CA264_14130 0.43 -0.2 3,317,832 + CA264_14130 0.43 -1.3 3,317,832 + CA264_14130 0.43 -1.6 3,317,833 - CA264_14130 0.43 -1.4 3,317,833 - CA264_14130 0.43 -0.1 3,317,833 - CA264_14130 0.43 -1.2 3,317,833 - CA264_14130 0.43 +0.4 3,317,841 - CA264_14130 0.45 -2.3 3,317,907 - CA264_14130 0.63 -0.1 3,317,930 + CA264_14130 0.69 -1.1 3,318,157 + +0.2 3,318,193 + +0.5 3,318,204 - +1.1 3,318,206 - -0.2 3,318,215 - -0.9 3,318,220 + +2.1 3,318,249 + +0.2 3,318,250 - -0.1 3,318,259 - -0.1 3,318,261 + +0.5 3,318,261 + -2.4 3,318,261 + -0.7 3,318,261 + -0.1 3,318,262 - +0.0 3,318,266 - -0.3 3,318,266 - -0.1 3,318,266 - -0.3 3,318,268 - -0.2 3,318,268 - -0.9 3,318,268 - +0.4 3,318,308 + -0.1 3,318,384 - +1.0 3,318,384 - +0.6 3,318,452 + -1.2 3,318,515 + CA264_14135 0.10 +0.1 3,318,556 + CA264_14135 0.12 +1.5 3,318,557 - CA264_14135 0.12 -0.1 3,318,557 - CA264_14135 0.12 -0.4 3,318,717 + CA264_14135 0.18 +1.3 3,318,717 + CA264_14135 0.18 +0.6 3,318,877 - CA264_14135 0.24 +1.2 3,318,996 + CA264_14135 0.28 +0.7 3,318,996 + CA264_14135 0.28 +0.4 3,318,997 - CA264_14135 0.29 -0.2 3,318,997 - CA264_14135 0.29 +0.1
Or see this region's nucleotide sequence