Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13260

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13250 and CA264_13255 are separated by 9 nucleotidesCA264_13255 and CA264_13260 are separated by 12 nucleotidesCA264_13260 and CA264_13265 are separated by 108 nucleotides CA264_13250: CA264_13250 - phosphopantothenoylcysteine decarboxylase, at 3,086,543 to 3,087,746 _13250 CA264_13255: CA264_13255 - DNA-directed RNA polymerase subunit omega, at 3,087,756 to 3,088,085 _13255 CA264_13260: CA264_13260 - outer membrane protein assembly factor BamD, at 3,088,098 to 3,088,892 _13260 CA264_13265: CA264_13265 - hypothetical protein, at 3,089,001 to 3,090,620 _13265 Position (kb) 3088 3089Strain fitness (log2 ratio) -1 0 1at 3088.089 kb on + strandat 3088.092 kb on + strandat 3088.181 kb on - strand, within CA264_13260at 3088.936 kb on + strandat 3089.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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3,088,089 + -1.2
3,088,092 + -1.0
3,088,181 - CA264_13260 0.10 -0.7
3,088,936 + -0.1
3,089,100 - -0.1

Or see this region's nucleotide sequence