Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13055 and CA264_13060 are separated by 388 nucleotides CA264_13060 and CA264_13065 are separated by 117 nucleotides CA264_13065 and CA264_13070 are separated by 60 nucleotides
CA264_13055: CA264_13055 - alpha-glucosidase, at 3,043,315 to 3,045,450
_13055
CA264_13060: CA264_13060 - tRNA-Ser, at 3,045,839 to 3,045,926
_13060
CA264_13065: CA264_13065 - DUF4153 domain-containing protein, at 3,046,044 to 3,047,912
_13065
CA264_13070: CA264_13070 - ribonuclease bn, at 3,047,973 to 3,048,944
_13070
Position (kb)
3046
3047
3048 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3045.152 kb on + strand, within CA264_13055 at 3045.277 kb on + strand at 3045.309 kb on + strand at 3045.310 kb on - strand at 3045.312 kb on - strand at 3045.316 kb on + strand at 3045.316 kb on + strand at 3045.316 kb on + strand at 3045.317 kb on - strand at 3045.317 kb on - strand at 3045.351 kb on + strand at 3045.412 kb on - strand at 3045.479 kb on - strand at 3045.502 kb on - strand at 3045.502 kb on - strand at 3045.502 kb on - strand at 3045.504 kb on - strand at 3045.504 kb on - strand at 3045.543 kb on - strand at 3045.588 kb on - strand at 3045.641 kb on - strand at 3045.681 kb on + strand at 3045.681 kb on + strand at 3045.689 kb on + strand at 3045.828 kb on + strand at 3045.999 kb on + strand at 3046.000 kb on - strand at 3046.108 kb on + strand at 3046.131 kb on + strand at 3046.186 kb on - strand at 3046.186 kb on - strand at 3046.243 kb on - strand, within CA264_13065 at 3046.267 kb on + strand, within CA264_13065 at 3046.274 kb on + strand, within CA264_13065 at 3046.322 kb on + strand, within CA264_13065 at 3046.322 kb on + strand, within CA264_13065 at 3046.323 kb on - strand, within CA264_13065 at 3046.323 kb on - strand, within CA264_13065 at 3046.323 kb on - strand, within CA264_13065 at 3046.323 kb on - strand, within CA264_13065 at 3046.325 kb on - strand, within CA264_13065 at 3046.325 kb on - strand, within CA264_13065 at 3046.350 kb on + strand, within CA264_13065 at 3046.350 kb on + strand, within CA264_13065 at 3046.351 kb on - strand, within CA264_13065 at 3046.351 kb on - strand, within CA264_13065 at 3046.444 kb on + strand, within CA264_13065 at 3046.445 kb on - strand, within CA264_13065 at 3046.445 kb on - strand, within CA264_13065 at 3046.492 kb on - strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.564 kb on - strand, within CA264_13065 at 3046.564 kb on - strand, within CA264_13065 at 3046.564 kb on - strand, within CA264_13065 at 3046.565 kb on + strand, within CA264_13065 at 3046.565 kb on + strand, within CA264_13065 at 3046.565 kb on + strand, within CA264_13065 at 3046.565 kb on + strand, within CA264_13065 at 3046.565 kb on + strand, within CA264_13065 at 3046.568 kb on + strand, within CA264_13065 at 3046.820 kb on + strand, within CA264_13065 at 3046.820 kb on + strand, within CA264_13065 at 3046.827 kb on + strand, within CA264_13065 at 3046.829 kb on + strand, within CA264_13065 at 3046.830 kb on - strand, within CA264_13065 at 3046.910 kb on - strand, within CA264_13065 at 3046.910 kb on - strand, within CA264_13065 at 3046.994 kb on - strand, within CA264_13065 at 3047.052 kb on + strand, within CA264_13065 at 3047.053 kb on - strand, within CA264_13065 at 3047.053 kb on - strand, within CA264_13065 at 3047.133 kb on + strand, within CA264_13065 at 3047.136 kb on + strand, within CA264_13065 at 3047.136 kb on + strand, within CA264_13065 at 3047.137 kb on - strand, within CA264_13065 at 3047.137 kb on - strand, within CA264_13065 at 3047.137 kb on - strand, within CA264_13065 at 3047.138 kb on + strand, within CA264_13065 at 3047.152 kb on + strand, within CA264_13065 at 3047.152 kb on + strand, within CA264_13065 at 3047.152 kb on + strand, within CA264_13065 at 3047.153 kb on - strand, within CA264_13065 at 3047.158 kb on + strand, within CA264_13065 at 3047.159 kb on - strand, within CA264_13065 at 3047.173 kb on + strand, within CA264_13065 at 3047.174 kb on - strand, within CA264_13065 at 3047.453 kb on + strand, within CA264_13065 at 3047.539 kb on + strand, within CA264_13065 at 3047.581 kb on + strand, within CA264_13065 at 3047.602 kb on - strand, within CA264_13065 at 3047.651 kb on - strand, within CA264_13065 at 3047.725 kb on + strand, within CA264_13065 at 3047.828 kb on + strand at 3047.828 kb on + strand at 3047.828 kb on + strand at 3047.935 kb on + strand at 3047.935 kb on + strand at 3047.942 kb on - strand at 3048.038 kb on + strand at 3048.069 kb on + strand at 3048.070 kb on - strand at 3048.071 kb on + strand, within CA264_13070 at 3048.071 kb on + strand, within CA264_13070 at 3048.072 kb on - strand, within CA264_13070 at 3048.133 kb on + strand, within CA264_13070 at 3048.134 kb on - strand, within CA264_13070 at 3048.266 kb on - strand, within CA264_13070 at 3048.266 kb on - strand, within CA264_13070 at 3048.268 kb on + strand, within CA264_13070 at 3048.268 kb on + strand, within CA264_13070 at 3048.269 kb on - strand, within CA264_13070 at 3048.272 kb on + strand, within CA264_13070 at 3048.335 kb on + strand, within CA264_13070 at 3048.338 kb on - strand, within CA264_13070 at 3048.338 kb on - strand, within CA264_13070 at 3048.341 kb on + strand, within CA264_13070 at 3048.341 kb on + strand, within CA264_13070 at 3048.341 kb on + strand, within CA264_13070 at 3048.341 kb on + strand, within CA264_13070 at 3048.342 kb on - strand, within CA264_13070 at 3048.342 kb on - strand, within CA264_13070 at 3048.342 kb on - strand, within CA264_13070 at 3048.343 kb on + strand, within CA264_13070 at 3048.343 kb on + strand, within CA264_13070 at 3048.343 kb on + strand, within CA264_13070 at 3048.344 kb on - strand, within CA264_13070 at 3048.344 kb on - strand, within CA264_13070 at 3048.344 kb on - strand, within CA264_13070 at 3048.344 kb on - strand, within CA264_13070 at 3048.365 kb on - strand, within CA264_13070 at 3048.478 kb on + strand, within CA264_13070 at 3048.479 kb on - strand, within CA264_13070 at 3048.498 kb on - strand, within CA264_13070 at 3048.501 kb on + strand, within CA264_13070 at 3048.502 kb on + strand, within CA264_13070 at 3048.502 kb on + strand, within CA264_13070 at 3048.503 kb on - strand, within CA264_13070 at 3048.503 kb on - strand, within CA264_13070 at 3048.604 kb on - strand, within CA264_13070 at 3048.626 kb on - strand, within CA264_13070 at 3048.678 kb on - strand, within CA264_13070 at 3048.711 kb on + strand, within CA264_13070 at 3048.755 kb on + strand, within CA264_13070 at 3048.755 kb on + strand, within CA264_13070 at 3048.782 kb on - strand, within CA264_13070 at 3048.845 kb on - strand, within CA264_13070 at 3048.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 3,045,152 + CA264_13055 0.86 -1.6 3,045,277 + -0.1 3,045,309 + -0.0 3,045,310 - +1.7 3,045,312 - -0.1 3,045,316 + +0.7 3,045,316 + -0.3 3,045,316 + -0.1 3,045,317 - -0.3 3,045,317 - -0.5 3,045,351 + +1.6 3,045,412 - -0.0 3,045,479 - -0.1 3,045,502 - -0.0 3,045,502 - -1.0 3,045,502 - +1.5 3,045,504 - +1.5 3,045,504 - -0.1 3,045,543 - -1.2 3,045,588 - +0.1 3,045,641 - +0.5 3,045,681 + +0.7 3,045,681 + +0.4 3,045,689 + -0.7 3,045,828 + +0.7 3,045,999 + +1.2 3,046,000 - -0.1 3,046,108 + -1.2 3,046,131 + -0.0 3,046,186 - +0.5 3,046,186 - +0.1 3,046,243 - CA264_13065 0.11 -1.2 3,046,267 + CA264_13065 0.12 -0.6 3,046,274 + CA264_13065 0.12 -0.5 3,046,322 + CA264_13065 0.15 +2.5 3,046,322 + CA264_13065 0.15 -2.4 3,046,323 - CA264_13065 0.15 -0.4 3,046,323 - CA264_13065 0.15 -0.1 3,046,323 - CA264_13065 0.15 -0.8 3,046,323 - CA264_13065 0.15 +2.1 3,046,325 - CA264_13065 0.15 -0.0 3,046,325 - CA264_13065 0.15 -0.2 3,046,350 + CA264_13065 0.16 -1.0 3,046,350 + CA264_13065 0.16 +1.7 3,046,351 - CA264_13065 0.16 -0.5 3,046,351 - CA264_13065 0.16 +1.1 3,046,444 + CA264_13065 0.21 +0.8 3,046,445 - CA264_13065 0.21 +0.7 3,046,445 - CA264_13065 0.21 -0.3 3,046,492 - CA264_13065 0.24 +0.8 3,046,563 + CA264_13065 0.28 +0.7 3,046,563 + CA264_13065 0.28 -0.7 3,046,563 + CA264_13065 0.28 +0.4 3,046,563 + CA264_13065 0.28 +0.1 3,046,563 + CA264_13065 0.28 +0.5 3,046,563 + CA264_13065 0.28 +0.3 3,046,563 + CA264_13065 0.28 +0.4 3,046,564 - CA264_13065 0.28 +0.2 3,046,564 - CA264_13065 0.28 +0.3 3,046,564 - CA264_13065 0.28 -0.1 3,046,565 + CA264_13065 0.28 +1.3 3,046,565 + CA264_13065 0.28 +1.1 3,046,565 + CA264_13065 0.28 -0.7 3,046,565 + CA264_13065 0.28 -0.5 3,046,565 + CA264_13065 0.28 -0.1 3,046,568 + CA264_13065 0.28 -2.0 3,046,820 + CA264_13065 0.42 +1.3 3,046,820 + CA264_13065 0.42 -2.2 3,046,827 + CA264_13065 0.42 -0.2 3,046,829 + CA264_13065 0.42 +0.5 3,046,830 - CA264_13065 0.42 -1.1 3,046,910 - CA264_13065 0.46 -0.3 3,046,910 - CA264_13065 0.46 -2.0 3,046,994 - CA264_13065 0.51 -0.3 3,047,052 + CA264_13065 0.54 -0.7 3,047,053 - CA264_13065 0.54 +0.1 3,047,053 - CA264_13065 0.54 +0.6 3,047,133 + CA264_13065 0.58 -0.1 3,047,136 + CA264_13065 0.58 +0.4 3,047,136 + CA264_13065 0.58 -0.1 3,047,137 - CA264_13065 0.58 -0.8 3,047,137 - CA264_13065 0.58 +1.2 3,047,137 - CA264_13065 0.58 -2.1 3,047,138 + CA264_13065 0.59 +1.2 3,047,152 + CA264_13065 0.59 +0.9 3,047,152 + CA264_13065 0.59 +0.6 3,047,152 + CA264_13065 0.59 -0.4 3,047,153 - CA264_13065 0.59 +0.5 3,047,158 + CA264_13065 0.60 -0.0 3,047,159 - CA264_13065 0.60 -0.5 3,047,173 + CA264_13065 0.60 -2.1 3,047,174 - CA264_13065 0.60 -1.7 3,047,453 + CA264_13065 0.75 +0.4 3,047,539 + CA264_13065 0.80 -0.3 3,047,581 + CA264_13065 0.82 +0.1 3,047,602 - CA264_13065 0.83 +1.1 3,047,651 - CA264_13065 0.86 -0.2 3,047,725 + CA264_13065 0.90 -0.5 3,047,828 + +0.6 3,047,828 + -0.0 3,047,828 + -0.3 3,047,935 + +0.6 3,047,935 + +0.3 3,047,942 - +0.1 3,048,038 + -1.0 3,048,069 + -2.5 3,048,070 - -0.6 3,048,071 + CA264_13070 0.10 -0.9 3,048,071 + CA264_13070 0.10 +1.2 3,048,072 - CA264_13070 0.10 -0.5 3,048,133 + CA264_13070 0.16 -0.0 3,048,134 - CA264_13070 0.17 +0.1 3,048,266 - CA264_13070 0.30 -1.1 3,048,266 - CA264_13070 0.30 +0.4 3,048,268 + CA264_13070 0.30 -0.6 3,048,268 + CA264_13070 0.30 -0.7 3,048,269 - CA264_13070 0.30 -1.4 3,048,272 + CA264_13070 0.31 -1.1 3,048,335 + CA264_13070 0.37 -1.2 3,048,338 - CA264_13070 0.38 +0.6 3,048,338 - CA264_13070 0.38 +0.8 3,048,341 + CA264_13070 0.38 +0.6 3,048,341 + CA264_13070 0.38 -0.1 3,048,341 + CA264_13070 0.38 -1.8 3,048,341 + CA264_13070 0.38 +0.0 3,048,342 - CA264_13070 0.38 -1.1 3,048,342 - CA264_13070 0.38 -2.8 3,048,342 - CA264_13070 0.38 -0.3 3,048,343 + CA264_13070 0.38 -0.6 3,048,343 + CA264_13070 0.38 -0.9 3,048,343 + CA264_13070 0.38 +0.3 3,048,344 - CA264_13070 0.38 -1.9 3,048,344 - CA264_13070 0.38 -1.9 3,048,344 - CA264_13070 0.38 -0.6 3,048,344 - CA264_13070 0.38 -0.9 3,048,365 - CA264_13070 0.40 -0.1 3,048,478 + CA264_13070 0.52 -1.1 3,048,479 - CA264_13070 0.52 +0.9 3,048,498 - CA264_13070 0.54 -0.2 3,048,501 + CA264_13070 0.54 +0.3 3,048,502 + CA264_13070 0.54 +0.6 3,048,502 + CA264_13070 0.54 -0.8 3,048,503 - CA264_13070 0.55 -1.9 3,048,503 - CA264_13070 0.55 -1.1 3,048,604 - CA264_13070 0.65 -2.2 3,048,626 - CA264_13070 0.67 -1.1 3,048,678 - CA264_13070 0.73 -1.0 3,048,711 + CA264_13070 0.76 +0.0 3,048,755 + CA264_13070 0.80 +0.7 3,048,755 + CA264_13070 0.80 +3.0 3,048,782 - CA264_13070 0.83 -1.6 3,048,845 - CA264_13070 0.90 -1.8 3,048,900 - -0.5
Or see this region's nucleotide sequence