Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12225 and CA264_12230 are separated by 199 nucleotides CA264_12230 and CA264_12235 are separated by 2 nucleotides CA264_12235 and CA264_12240 are separated by 287 nucleotides
CA264_12225: CA264_12225 - carboxypeptidase, at 2,847,929 to 2,849,416
_12225
CA264_12230: CA264_12230 - hypothetical protein, at 2,849,616 to 2,850,200
_12230
CA264_12235: CA264_12235 - hypothetical protein, at 2,850,203 to 2,850,850
_12235
CA264_12240: CA264_12240 - ABC transporter ATP-binding protein, at 2,851,138 to 2,852,097
_12240
Position (kb)
2850
2851 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2849.205 kb on + strand, within CA264_12225 at 2849.205 kb on + strand, within CA264_12225 at 2849.206 kb on - strand, within CA264_12225 at 2849.206 kb on - strand, within CA264_12225 at 2849.208 kb on + strand, within CA264_12225 at 2849.208 kb on + strand, within CA264_12225 at 2849.208 kb on + strand, within CA264_12225 at 2849.209 kb on - strand, within CA264_12225 at 2849.236 kb on + strand, within CA264_12225 at 2849.301 kb on - strand at 2849.348 kb on - strand at 2849.431 kb on - strand at 2849.434 kb on + strand at 2849.486 kb on + strand at 2849.489 kb on - strand at 2849.508 kb on + strand at 2849.509 kb on - strand at 2849.512 kb on + strand at 2849.513 kb on - strand at 2849.513 kb on - strand at 2849.513 kb on - strand at 2849.601 kb on + strand at 2849.611 kb on + strand at 2849.618 kb on - strand at 2849.618 kb on - strand at 2849.635 kb on + strand at 2849.635 kb on + strand at 2849.636 kb on - strand at 2849.732 kb on + strand, within CA264_12230 at 2849.820 kb on - strand, within CA264_12230 at 2849.832 kb on + strand, within CA264_12230 at 2849.833 kb on - strand, within CA264_12230 at 2849.833 kb on - strand, within CA264_12230 at 2849.837 kb on - strand, within CA264_12230 at 2849.884 kb on + strand, within CA264_12230 at 2849.885 kb on - strand, within CA264_12230 at 2849.902 kb on + strand, within CA264_12230 at 2849.917 kb on - strand, within CA264_12230 at 2849.917 kb on - strand, within CA264_12230 at 2850.054 kb on + strand, within CA264_12230 at 2850.103 kb on + strand, within CA264_12230 at 2850.104 kb on - strand, within CA264_12230 at 2850.104 kb on - strand, within CA264_12230 at 2850.104 kb on - strand, within CA264_12230 at 2850.200 kb on + strand at 2850.200 kb on + strand at 2850.201 kb on - strand at 2850.205 kb on - strand at 2850.205 kb on - strand at 2850.205 kb on - strand at 2850.296 kb on + strand, within CA264_12235 at 2850.297 kb on - strand, within CA264_12235 at 2850.299 kb on - strand, within CA264_12235 at 2850.299 kb on - strand, within CA264_12235 at 2850.317 kb on + strand, within CA264_12235 at 2850.318 kb on - strand, within CA264_12235 at 2850.331 kb on - strand, within CA264_12235 at 2850.355 kb on - strand, within CA264_12235 at 2850.355 kb on - strand, within CA264_12235 at 2850.395 kb on + strand, within CA264_12235 at 2850.395 kb on + strand, within CA264_12235 at 2850.396 kb on - strand, within CA264_12235 at 2850.396 kb on - strand, within CA264_12235 at 2850.450 kb on + strand, within CA264_12235 at 2850.486 kb on - strand, within CA264_12235 at 2850.486 kb on - strand, within CA264_12235 at 2850.486 kb on - strand, within CA264_12235 at 2850.489 kb on + strand, within CA264_12235 at 2850.514 kb on + strand, within CA264_12235 at 2850.515 kb on - strand, within CA264_12235 at 2850.523 kb on + strand, within CA264_12235 at 2850.524 kb on - strand, within CA264_12235 at 2850.524 kb on - strand, within CA264_12235 at 2850.525 kb on + strand, within CA264_12235 at 2850.526 kb on - strand, within CA264_12235 at 2850.526 kb on - strand, within CA264_12235 at 2850.588 kb on + strand, within CA264_12235 at 2850.594 kb on + strand, within CA264_12235 at 2850.788 kb on - strand at 2850.838 kb on + strand at 2850.867 kb on - strand at 2850.922 kb on - strand at 2850.922 kb on - strand at 2850.942 kb on + strand at 2850.943 kb on - strand at 2850.943 kb on - strand at 2850.956 kb on - strand at 2851.016 kb on + strand at 2851.054 kb on - strand at 2851.144 kb on + strand at 2851.184 kb on + strand at 2851.207 kb on - strand at 2851.209 kb on - strand at 2851.209 kb on - strand at 2851.217 kb on + strand at 2851.217 kb on + strand at 2851.218 kb on - strand at 2851.218 kb on - strand at 2851.218 kb on - strand at 2851.218 kb on - strand at 2851.221 kb on + strand at 2851.222 kb on - strand at 2851.290 kb on + strand, within CA264_12240 at 2851.291 kb on - strand, within CA264_12240 at 2851.491 kb on - strand, within CA264_12240 at 2851.499 kb on + strand, within CA264_12240 at 2851.561 kb on - strand, within CA264_12240 at 2851.561 kb on - strand, within CA264_12240 at 2851.708 kb on - strand, within CA264_12240 at 2851.743 kb on - strand, within CA264_12240 at 2851.743 kb on - strand, within CA264_12240 at 2851.743 kb on - strand, within CA264_12240 at 2851.743 kb on - strand, within CA264_12240 at 2851.778 kb on + strand, within CA264_12240 at 2851.778 kb on + strand, within CA264_12240 at 2851.833 kb on - strand, within CA264_12240
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 2,849,205 + CA264_12225 0.86 +1.7 2,849,205 + CA264_12225 0.86 -0.6 2,849,206 - CA264_12225 0.86 -0.2 2,849,206 - CA264_12225 0.86 -0.3 2,849,208 + CA264_12225 0.86 -0.9 2,849,208 + CA264_12225 0.86 -0.4 2,849,208 + CA264_12225 0.86 -2.3 2,849,209 - CA264_12225 0.86 -2.8 2,849,236 + CA264_12225 0.88 -0.1 2,849,301 - +1.1 2,849,348 - -0.3 2,849,431 - -0.1 2,849,434 + -0.1 2,849,486 + -0.9 2,849,489 - +0.1 2,849,508 + +0.1 2,849,509 - +0.7 2,849,512 + +0.8 2,849,513 - +0.6 2,849,513 - +1.3 2,849,513 - -0.3 2,849,601 + +0.1 2,849,611 + -0.8 2,849,618 - -0.6 2,849,618 - -1.1 2,849,635 + +0.9 2,849,635 + +0.3 2,849,636 - -0.2 2,849,732 + CA264_12230 0.20 -1.8 2,849,820 - CA264_12230 0.35 +0.8 2,849,832 + CA264_12230 0.37 -0.5 2,849,833 - CA264_12230 0.37 -0.0 2,849,833 - CA264_12230 0.37 +0.7 2,849,837 - CA264_12230 0.38 +0.9 2,849,884 + CA264_12230 0.46 +0.3 2,849,885 - CA264_12230 0.46 -0.7 2,849,902 + CA264_12230 0.49 +1.5 2,849,917 - CA264_12230 0.51 -3.0 2,849,917 - CA264_12230 0.51 -0.3 2,850,054 + CA264_12230 0.75 +0.2 2,850,103 + CA264_12230 0.83 +0.3 2,850,104 - CA264_12230 0.83 +1.1 2,850,104 - CA264_12230 0.83 +2.5 2,850,104 - CA264_12230 0.83 +0.4 2,850,200 + +0.2 2,850,200 + -1.9 2,850,201 - -0.8 2,850,205 - +1.4 2,850,205 - +1.6 2,850,205 - +0.4 2,850,296 + CA264_12235 0.14 -0.5 2,850,297 - CA264_12235 0.15 -1.4 2,850,299 - CA264_12235 0.15 +0.8 2,850,299 - CA264_12235 0.15 +1.1 2,850,317 + CA264_12235 0.18 +0.0 2,850,318 - CA264_12235 0.18 -1.3 2,850,331 - CA264_12235 0.20 -0.5 2,850,355 - CA264_12235 0.23 -0.6 2,850,355 - CA264_12235 0.23 -0.1 2,850,395 + CA264_12235 0.30 -0.2 2,850,395 + CA264_12235 0.30 +0.3 2,850,396 - CA264_12235 0.30 -0.7 2,850,396 - CA264_12235 0.30 -0.9 2,850,450 + CA264_12235 0.38 +0.4 2,850,486 - CA264_12235 0.44 -0.6 2,850,486 - CA264_12235 0.44 -2.1 2,850,486 - CA264_12235 0.44 +0.8 2,850,489 + CA264_12235 0.44 -1.3 2,850,514 + CA264_12235 0.48 -1.0 2,850,515 - CA264_12235 0.48 -0.7 2,850,523 + CA264_12235 0.49 -0.8 2,850,524 - CA264_12235 0.50 -1.1 2,850,524 - CA264_12235 0.50 -0.3 2,850,525 + CA264_12235 0.50 -0.3 2,850,526 - CA264_12235 0.50 +0.5 2,850,526 - CA264_12235 0.50 -1.0 2,850,588 + CA264_12235 0.59 -2.2 2,850,594 + CA264_12235 0.60 +0.4 2,850,788 - +0.5 2,850,838 + -0.8 2,850,867 - +0.9 2,850,922 - -0.7 2,850,922 - +0.1 2,850,942 + +0.4 2,850,943 - +0.2 2,850,943 - -0.4 2,850,956 - +0.2 2,851,016 + -1.4 2,851,054 - -0.3 2,851,144 + -0.6 2,851,184 + -0.4 2,851,207 - -1.6 2,851,209 - +1.4 2,851,209 - -1.7 2,851,217 + +0.6 2,851,217 + -0.0 2,851,218 - +0.1 2,851,218 - -0.3 2,851,218 - +0.6 2,851,218 - -0.1 2,851,221 + +0.7 2,851,222 - +2.2 2,851,290 + CA264_12240 0.16 +1.9 2,851,291 - CA264_12240 0.16 -0.1 2,851,491 - CA264_12240 0.37 +0.5 2,851,499 + CA264_12240 0.38 +0.1 2,851,561 - CA264_12240 0.44 -0.5 2,851,561 - CA264_12240 0.44 -0.2 2,851,708 - CA264_12240 0.59 -0.8 2,851,743 - CA264_12240 0.63 +0.7 2,851,743 - CA264_12240 0.63 -0.2 2,851,743 - CA264_12240 0.63 +1.1 2,851,743 - CA264_12240 0.63 -0.2 2,851,778 + CA264_12240 0.67 +0.3 2,851,778 + CA264_12240 0.67 +0.2 2,851,833 - CA264_12240 0.72 -0.6
Or see this region's nucleotide sequence