Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11665

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11655 and CA264_11660 are separated by 154 nucleotidesCA264_11660 and CA264_11665 are separated by 49 nucleotidesCA264_11665 and CA264_11670 are separated by 500 nucleotides CA264_11655: CA264_11655 - hypothetical protein, at 2,719,504 to 2,719,740 _11655 CA264_11660: CA264_11660 - hypothetical protein, at 2,719,895 to 2,720,293 _11660 CA264_11665: CA264_11665 - DDE transposase, at 2,720,343 to 2,721,113 _11665 CA264_11670: CA264_11670 - DNA repair protein, at 2,721,614 to 2,722,084 _11670 Position (kb) 2720 2721 2722Strain fitness (log2 ratio) -2 -1 0 1 2at 2719.399 kb on + strandat 2719.412 kb on - strandat 2719.417 kb on - strandat 2719.417 kb on - strandat 2719.420 kb on + strandat 2719.421 kb on - strandat 2719.421 kb on - strandat 2719.421 kb on - strandat 2719.421 kb on - strandat 2719.424 kb on + strandat 2719.429 kb on + strandat 2719.430 kb on - strandat 2719.430 kb on - strandat 2719.430 kb on - strandat 2719.430 kb on - strandat 2719.467 kb on - strandat 2719.624 kb on + strand, within CA264_11655at 2719.624 kb on + strand, within CA264_11655at 2720.310 kb on + strandat 2720.327 kb on + strandat 2720.349 kb on - strandat 2720.386 kb on - strandat 2720.585 kb on - strand, within CA264_11665at 2720.721 kb on + strand, within CA264_11665at 2720.820 kb on + strand, within CA264_11665at 2720.821 kb on - strand, within CA264_11665at 2720.924 kb on - strand, within CA264_11665at 2720.924 kb on - strand, within CA264_11665at 2720.926 kb on + strand, within CA264_11665at 2720.927 kb on - strand, within CA264_11665at 2720.930 kb on - strand, within CA264_11665at 2721.113 kb on + strandat 2721.136 kb on - strandat 2721.136 kb on - strandat 2721.193 kb on + strandat 2721.217 kb on + strandat 2721.227 kb on - strandat 2721.272 kb on - strandat 2721.277 kb on + strandat 2721.285 kb on + strandat 2721.286 kb on - strandat 2721.323 kb on + strandat 2721.367 kb on - strandat 2721.370 kb on + strandat 2721.380 kb on + strandat 2721.381 kb on - strandat 2721.402 kb on + strandat 2721.402 kb on + strandat 2721.403 kb on - strandat 2721.404 kb on + strandat 2721.456 kb on - strandat 2721.485 kb on - strandat 2721.628 kb on + strandat 2721.660 kb on + strandat 2721.661 kb on - strand, within CA264_11670at 2721.709 kb on + strand, within CA264_11670at 2721.710 kb on - strand, within CA264_11670at 2721.710 kb on - strand, within CA264_11670at 2721.728 kb on + strand, within CA264_11670at 2721.728 kb on + strand, within CA264_11670at 2721.728 kb on + strand, within CA264_11670at 2721.729 kb on - strand, within CA264_11670at 2721.828 kb on - strand, within CA264_11670at 2721.969 kb on + strand, within CA264_11670at 2722.006 kb on - strand, within CA264_11670at 2722.006 kb on - strand, within CA264_11670at 2722.080 kb on + strandat 2722.081 kb on - strandat 2722.082 kb on + strandat 2722.112 kb on + strandat 2722.112 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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2,719,399 + +0.1
2,719,412 - +0.3
2,719,417 - -0.6
2,719,417 - -2.0
2,719,420 + -0.6
2,719,421 - -1.0
2,719,421 - -0.8
2,719,421 - +0.9
2,719,421 - +0.6
2,719,424 + -2.6
2,719,429 + -0.1
2,719,430 - -0.9
2,719,430 - -1.7
2,719,430 - -0.2
2,719,430 - +0.6
2,719,467 - +0.1
2,719,624 + CA264_11655 0.51 -0.4
2,719,624 + CA264_11655 0.51 -0.4
2,720,310 + -0.7
2,720,327 + -0.4
2,720,349 - -0.5
2,720,386 - -0.1
2,720,585 - CA264_11665 0.31 -0.2
2,720,721 + CA264_11665 0.49 +0.6
2,720,820 + CA264_11665 0.62 -1.0
2,720,821 - CA264_11665 0.62 -0.4
2,720,924 - CA264_11665 0.75 +0.8
2,720,924 - CA264_11665 0.75 +0.7
2,720,926 + CA264_11665 0.76 +1.3
2,720,927 - CA264_11665 0.76 -1.2
2,720,930 - CA264_11665 0.76 +0.2
2,721,113 + -0.1
2,721,136 - -0.4
2,721,136 - -0.4
2,721,193 + +0.1
2,721,217 + +0.2
2,721,227 - -0.2
2,721,272 - -0.6
2,721,277 + -0.3
2,721,285 + -0.3
2,721,286 - -0.3
2,721,323 + +0.0
2,721,367 - -2.2
2,721,370 + -2.3
2,721,380 + +0.8
2,721,381 - -2.6
2,721,402 + +0.1
2,721,402 + +0.2
2,721,403 - +0.1
2,721,404 + +0.2
2,721,456 - -0.4
2,721,485 - +0.5
2,721,628 + +0.9
2,721,660 + -0.6
2,721,661 - CA264_11670 0.10 -0.0
2,721,709 + CA264_11670 0.20 -0.3
2,721,710 - CA264_11670 0.20 -0.2
2,721,710 - CA264_11670 0.20 -2.6
2,721,728 + CA264_11670 0.24 +1.3
2,721,728 + CA264_11670 0.24 +0.8
2,721,728 + CA264_11670 0.24 +0.9
2,721,729 - CA264_11670 0.24 -0.9
2,721,828 - CA264_11670 0.45 -2.6
2,721,969 + CA264_11670 0.75 -0.8
2,722,006 - CA264_11670 0.83 +0.1
2,722,006 - CA264_11670 0.83 -0.0
2,722,080 + +1.9
2,722,081 - -0.3
2,722,082 + -0.5
2,722,112 + +0.2
2,722,112 + +0.4

Or see this region's nucleotide sequence