Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11415

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11405 and CA264_11410 are separated by 57 nucleotidesCA264_11410 and CA264_11415 overlap by 8 nucleotidesCA264_11415 and CA264_11420 overlap by 4 nucleotides CA264_11405: CA264_11405 - glycerophosphodiester phosphodiesterase, at 2,643,199 to 2,644,098 _11405 CA264_11410: CA264_11410 - histidine phosphatase family protein, at 2,644,156 to 2,644,755 _11410 CA264_11415: CA264_11415 - carbohydrate kinase, at 2,644,748 to 2,646,208 _11415 CA264_11420: CA264_11420 - sugar kinase, at 2,646,205 to 2,647,665 _11420 Position (kb) 2644 2645 2646 2647Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2643.779 kb on + strand, within CA264_11405at 2643.811 kb on - strand, within CA264_11405at 2643.871 kb on + strand, within CA264_11405at 2643.903 kb on + strand, within CA264_11405at 2643.903 kb on + strand, within CA264_11405at 2643.904 kb on - strand, within CA264_11405at 2643.925 kb on - strand, within CA264_11405at 2643.989 kb on + strand, within CA264_11405at 2643.999 kb on - strand, within CA264_11405at 2644.044 kb on + strandat 2644.058 kb on - strandat 2644.105 kb on + strandat 2644.132 kb on + strandat 2644.133 kb on - strandat 2644.209 kb on + strandat 2644.210 kb on - strandat 2644.286 kb on + strand, within CA264_11410at 2644.287 kb on - strand, within CA264_11410at 2644.321 kb on + strand, within CA264_11410at 2644.327 kb on - strand, within CA264_11410at 2644.378 kb on + strand, within CA264_11410at 2644.378 kb on + strand, within CA264_11410at 2644.378 kb on + strand, within CA264_11410at 2644.381 kb on - strand, within CA264_11410at 2644.381 kb on - strand, within CA264_11410at 2644.562 kb on + strand, within CA264_11410at 2644.563 kb on - strand, within CA264_11410at 2644.563 kb on - strand, within CA264_11410at 2644.598 kb on + strand, within CA264_11410at 2644.598 kb on + strand, within CA264_11410at 2644.599 kb on - strand, within CA264_11410at 2644.600 kb on + strand, within CA264_11410at 2644.600 kb on + strand, within CA264_11410at 2644.600 kb on + strand, within CA264_11410at 2644.600 kb on + strand, within CA264_11410at 2644.601 kb on - strand, within CA264_11410at 2644.601 kb on - strand, within CA264_11410at 2644.601 kb on - strand, within CA264_11410at 2644.601 kb on - strand, within CA264_11410at 2644.694 kb on + strand, within CA264_11410at 2644.695 kb on - strand, within CA264_11410at 2644.695 kb on - strand, within CA264_11410at 2644.739 kb on - strandat 2644.755 kb on + strandat 2644.762 kb on - strandat 2644.772 kb on + strandat 2644.772 kb on + strandat 2644.772 kb on + strandat 2644.773 kb on - strandat 2644.775 kb on - strandat 2644.775 kb on - strandat 2644.775 kb on - strandat 2644.776 kb on + strandat 2644.792 kb on + strandat 2644.866 kb on - strandat 2644.892 kb on + strandat 2644.903 kb on + strand, within CA264_11415at 2644.903 kb on + strand, within CA264_11415at 2644.903 kb on + strand, within CA264_11415at 2644.904 kb on - strand, within CA264_11415at 2644.904 kb on - strand, within CA264_11415at 2644.905 kb on + strand, within CA264_11415at 2644.905 kb on + strand, within CA264_11415at 2644.925 kb on + strand, within CA264_11415at 2644.926 kb on - strand, within CA264_11415at 2645.041 kb on - strand, within CA264_11415at 2645.066 kb on + strand, within CA264_11415at 2645.104 kb on - strand, within CA264_11415at 2645.108 kb on + strand, within CA264_11415at 2645.108 kb on + strand, within CA264_11415at 2645.122 kb on + strand, within CA264_11415at 2645.169 kb on - strand, within CA264_11415at 2645.185 kb on + strand, within CA264_11415at 2645.185 kb on + strand, within CA264_11415at 2645.228 kb on + strand, within CA264_11415at 2645.237 kb on - strand, within CA264_11415at 2645.298 kb on - strand, within CA264_11415at 2645.365 kb on - strand, within CA264_11415at 2645.384 kb on + strand, within CA264_11415at 2645.385 kb on - strand, within CA264_11415at 2645.557 kb on + strand, within CA264_11415at 2645.557 kb on + strand, within CA264_11415at 2645.558 kb on - strand, within CA264_11415at 2645.558 kb on - strand, within CA264_11415at 2645.661 kb on + strand, within CA264_11415at 2645.693 kb on + strand, within CA264_11415at 2645.695 kb on + strand, within CA264_11415at 2645.695 kb on + strand, within CA264_11415at 2645.695 kb on + strand, within CA264_11415at 2645.711 kb on + strand, within CA264_11415at 2645.712 kb on - strand, within CA264_11415at 2645.712 kb on - strand, within CA264_11415at 2645.712 kb on - strand, within CA264_11415at 2645.728 kb on - strand, within CA264_11415at 2645.821 kb on + strand, within CA264_11415at 2645.830 kb on + strand, within CA264_11415at 2645.858 kb on + strand, within CA264_11415at 2645.904 kb on + strand, within CA264_11415at 2645.905 kb on - strand, within CA264_11415at 2645.966 kb on - strand, within CA264_11415at 2645.971 kb on + strand, within CA264_11415at 2645.971 kb on + strand, within CA264_11415at 2645.972 kb on - strand, within CA264_11415at 2645.987 kb on + strand, within CA264_11415at 2645.997 kb on - strand, within CA264_11415at 2645.997 kb on - strand, within CA264_11415at 2646.182 kb on + strandat 2646.182 kb on + strandat 2646.182 kb on + strandat 2646.182 kb on + strandat 2646.182 kb on + strandat 2646.183 kb on - strandat 2646.183 kb on - strandat 2646.196 kb on - strandat 2646.209 kb on - strandat 2646.255 kb on + strandat 2646.300 kb on - strandat 2646.304 kb on + strandat 2646.305 kb on - strandat 2646.321 kb on + strandat 2646.321 kb on + strandat 2646.322 kb on - strandat 2646.322 kb on - strandat 2646.334 kb on + strandat 2646.370 kb on + strand, within CA264_11420at 2646.478 kb on + strand, within CA264_11420at 2646.478 kb on + strand, within CA264_11420at 2646.478 kb on + strand, within CA264_11420at 2646.478 kb on + strand, within CA264_11420at 2646.482 kb on + strand, within CA264_11420at 2646.487 kb on + strand, within CA264_11420at 2646.488 kb on - strand, within CA264_11420at 2646.544 kb on + strand, within CA264_11420at 2646.544 kb on + strand, within CA264_11420at 2646.544 kb on + strand, within CA264_11420at 2646.545 kb on - strand, within CA264_11420at 2646.545 kb on - strand, within CA264_11420at 2646.545 kb on - strand, within CA264_11420at 2646.546 kb on + strand, within CA264_11420at 2646.582 kb on + strand, within CA264_11420at 2646.720 kb on - strand, within CA264_11420at 2646.720 kb on - strand, within CA264_11420at 2646.790 kb on + strand, within CA264_11420at 2646.790 kb on + strand, within CA264_11420at 2646.793 kb on + strand, within CA264_11420at 2646.793 kb on + strand, within CA264_11420at 2646.811 kb on + strand, within CA264_11420at 2646.811 kb on + strand, within CA264_11420at 2646.811 kb on + strand, within CA264_11420at 2646.812 kb on - strand, within CA264_11420at 2646.854 kb on + strand, within CA264_11420at 2646.854 kb on + strand, within CA264_11420at 2646.885 kb on + strand, within CA264_11420at 2646.886 kb on - strand, within CA264_11420at 2646.886 kb on - strand, within CA264_11420at 2646.886 kb on - strand, within CA264_11420at 2646.964 kb on + strand, within CA264_11420at 2647.027 kb on + strand, within CA264_11420at 2647.028 kb on - strand, within CA264_11420at 2647.029 kb on + strand, within CA264_11420at 2647.121 kb on + strand, within CA264_11420at 2647.121 kb on + strand, within CA264_11420at 2647.122 kb on - strand, within CA264_11420at 2647.122 kb on - strand, within CA264_11420at 2647.171 kb on + strand, within CA264_11420at 2647.195 kb on + strand, within CA264_11420at 2647.196 kb on - strand, within CA264_11420at 2647.201 kb on + strand, within CA264_11420at 2647.201 kb on + strand, within CA264_11420at 2647.202 kb on - strand, within CA264_11420

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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2,643,779 + CA264_11405 0.64 -0.1
2,643,811 - CA264_11405 0.68 +0.6
2,643,871 + CA264_11405 0.75 -1.9
2,643,903 + CA264_11405 0.78 -0.4
2,643,903 + CA264_11405 0.78 -1.1
2,643,904 - CA264_11405 0.78 -0.5
2,643,925 - CA264_11405 0.81 +0.0
2,643,989 + CA264_11405 0.88 -0.7
2,643,999 - CA264_11405 0.89 +1.7
2,644,044 + -0.1
2,644,058 - -1.9
2,644,105 + +0.7
2,644,132 + -0.2
2,644,133 - -0.1
2,644,209 + +0.5
2,644,210 - +0.4
2,644,286 + CA264_11410 0.22 +1.1
2,644,287 - CA264_11410 0.22 -0.3
2,644,321 + CA264_11410 0.28 +0.0
2,644,327 - CA264_11410 0.28 +0.0
2,644,378 + CA264_11410 0.37 +0.7
2,644,378 + CA264_11410 0.37 +0.6
2,644,378 + CA264_11410 0.37 +0.0
2,644,381 - CA264_11410 0.38 +0.8
2,644,381 - CA264_11410 0.38 +0.5
2,644,562 + CA264_11410 0.68 +0.8
2,644,563 - CA264_11410 0.68 -0.7
2,644,563 - CA264_11410 0.68 -0.4
2,644,598 + CA264_11410 0.74 -0.7
2,644,598 + CA264_11410 0.74 +0.1
2,644,599 - CA264_11410 0.74 +0.7
2,644,600 + CA264_11410 0.74 +0.3
2,644,600 + CA264_11410 0.74 -0.8
2,644,600 + CA264_11410 0.74 +1.1
2,644,600 + CA264_11410 0.74 -0.7
2,644,601 - CA264_11410 0.74 -0.5
2,644,601 - CA264_11410 0.74 +0.6
2,644,601 - CA264_11410 0.74 -2.5
2,644,601 - CA264_11410 0.74 +0.6
2,644,694 + CA264_11410 0.90 -0.0
2,644,695 - CA264_11410 0.90 -0.3
2,644,695 - CA264_11410 0.90 +2.2
2,644,739 - +0.2
2,644,755 + -0.4
2,644,762 - +0.4
2,644,772 + -0.2
2,644,772 + +0.2
2,644,772 + -1.1
2,644,773 - +0.0
2,644,775 - +0.7
2,644,775 - -0.5
2,644,775 - -0.3
2,644,776 + -0.2
2,644,792 + -0.2
2,644,866 - -0.7
2,644,892 + -0.9
2,644,903 + CA264_11415 0.11 +0.7
2,644,903 + CA264_11415 0.11 -0.3
2,644,903 + CA264_11415 0.11 +0.6
2,644,904 - CA264_11415 0.11 -1.4
2,644,904 - CA264_11415 0.11 +0.7
2,644,905 + CA264_11415 0.11 -1.7
2,644,905 + CA264_11415 0.11 -1.5
2,644,925 + CA264_11415 0.12 -0.0
2,644,926 - CA264_11415 0.12 -0.3
2,645,041 - CA264_11415 0.20 -0.0
2,645,066 + CA264_11415 0.22 -1.7
2,645,104 - CA264_11415 0.24 -1.3
2,645,108 + CA264_11415 0.25 -1.2
2,645,108 + CA264_11415 0.25 +0.9
2,645,122 + CA264_11415 0.26 -1.4
2,645,169 - CA264_11415 0.29 -0.8
2,645,185 + CA264_11415 0.30 -0.3
2,645,185 + CA264_11415 0.30 +0.2
2,645,228 + CA264_11415 0.33 -1.3
2,645,237 - CA264_11415 0.33 -0.6
2,645,298 - CA264_11415 0.38 +1.4
2,645,365 - CA264_11415 0.42 +0.1
2,645,384 + CA264_11415 0.44 +0.8
2,645,385 - CA264_11415 0.44 +0.1
2,645,557 + CA264_11415 0.55 -1.1
2,645,557 + CA264_11415 0.55 -0.4
2,645,558 - CA264_11415 0.55 -3.2
2,645,558 - CA264_11415 0.55 +0.8
2,645,661 + CA264_11415 0.62 +1.2
2,645,693 + CA264_11415 0.65 -0.7
2,645,695 + CA264_11415 0.65 +0.7
2,645,695 + CA264_11415 0.65 -0.2
2,645,695 + CA264_11415 0.65 -0.2
2,645,711 + CA264_11415 0.66 -1.2
2,645,712 - CA264_11415 0.66 -1.1
2,645,712 - CA264_11415 0.66 -1.2
2,645,712 - CA264_11415 0.66 -0.8
2,645,728 - CA264_11415 0.67 -0.2
2,645,821 + CA264_11415 0.73 -1.5
2,645,830 + CA264_11415 0.74 +1.8
2,645,858 + CA264_11415 0.76 -0.2
2,645,904 + CA264_11415 0.79 +1.3
2,645,905 - CA264_11415 0.79 +0.0
2,645,966 - CA264_11415 0.83 +0.7
2,645,971 + CA264_11415 0.84 -1.2
2,645,971 + CA264_11415 0.84 -1.2
2,645,972 - CA264_11415 0.84 -1.9
2,645,987 + CA264_11415 0.85 -0.7
2,645,997 - CA264_11415 0.85 -1.5
2,645,997 - CA264_11415 0.85 -0.3
2,646,182 + +1.1
2,646,182 + +0.1
2,646,182 + -0.3
2,646,182 + -1.9
2,646,182 + +1.2
2,646,183 - +0.5
2,646,183 - -1.6
2,646,196 - -0.6
2,646,209 - +0.6
2,646,255 + -1.2
2,646,300 - -0.2
2,646,304 + +0.0
2,646,305 - -0.4
2,646,321 + +0.2
2,646,321 + -0.3
2,646,322 - +0.5
2,646,322 - +0.9
2,646,334 + -0.9
2,646,370 + CA264_11420 0.11 +0.6
2,646,478 + CA264_11420 0.19 -1.3
2,646,478 + CA264_11420 0.19 -0.5
2,646,478 + CA264_11420 0.19 +0.0
2,646,478 + CA264_11420 0.19 -0.4
2,646,482 + CA264_11420 0.19 +1.0
2,646,487 + CA264_11420 0.19 +0.5
2,646,488 - CA264_11420 0.19 -0.6
2,646,544 + CA264_11420 0.23 -0.0
2,646,544 + CA264_11420 0.23 -1.1
2,646,544 + CA264_11420 0.23 -1.5
2,646,545 - CA264_11420 0.23 +1.5
2,646,545 - CA264_11420 0.23 -0.6
2,646,545 - CA264_11420 0.23 +0.9
2,646,546 + CA264_11420 0.23 -1.4
2,646,582 + CA264_11420 0.26 +1.1
2,646,720 - CA264_11420 0.35 +0.2
2,646,720 - CA264_11420 0.35 +0.1
2,646,790 + CA264_11420 0.40 +0.5
2,646,790 + CA264_11420 0.40 -0.3
2,646,793 + CA264_11420 0.40 -0.7
2,646,793 + CA264_11420 0.40 -0.4
2,646,811 + CA264_11420 0.41 -0.5
2,646,811 + CA264_11420 0.41 -1.8
2,646,811 + CA264_11420 0.41 +0.0
2,646,812 - CA264_11420 0.42 +0.3
2,646,854 + CA264_11420 0.44 -0.3
2,646,854 + CA264_11420 0.44 -0.8
2,646,885 + CA264_11420 0.47 -0.9
2,646,886 - CA264_11420 0.47 +0.2
2,646,886 - CA264_11420 0.47 -2.3
2,646,886 - CA264_11420 0.47 -1.0
2,646,964 + CA264_11420 0.52 -0.1
2,647,027 + CA264_11420 0.56 +0.0
2,647,028 - CA264_11420 0.56 -0.2
2,647,029 + CA264_11420 0.56 -2.3
2,647,121 + CA264_11420 0.63 -0.1
2,647,121 + CA264_11420 0.63 -0.3
2,647,122 - CA264_11420 0.63 -0.4
2,647,122 - CA264_11420 0.63 -0.8
2,647,171 + CA264_11420 0.66 -2.7
2,647,195 + CA264_11420 0.68 +0.7
2,647,196 - CA264_11420 0.68 -1.6
2,647,201 + CA264_11420 0.68 -1.6
2,647,201 + CA264_11420 0.68 -0.2
2,647,202 - CA264_11420 0.68 -0.2

Or see this region's nucleotide sequence