Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11220

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11210 and CA264_11215 are separated by 129 nucleotidesCA264_11215 and CA264_11220 are separated by 58 nucleotidesCA264_11220 and CA264_11225 are separated by 69 nucleotides CA264_11210: CA264_11210 - ABC transporter ATP-binding protein, at 2,597,489 to 2,598,469 _11210 CA264_11215: CA264_11215 - N-acetyltransferase, at 2,598,599 to 2,599,147 _11215 CA264_11220: CA264_11220 - hypothetical protein, at 2,599,206 to 2,600,210 _11220 CA264_11225: CA264_11225 - alpha/beta hydrolase, at 2,600,280 to 2,601,704 _11225 Position (kb) 2599 2600 2601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2598.288 kb on + strand, within CA264_11210at 2598.288 kb on + strand, within CA264_11210at 2598.290 kb on + strand, within CA264_11210at 2598.291 kb on - strand, within CA264_11210at 2598.524 kb on - strandat 2598.524 kb on - strandat 2598.524 kb on - strandat 2598.601 kb on - strandat 2598.630 kb on + strandat 2598.630 kb on + strandat 2598.853 kb on - strand, within CA264_11215at 2598.857 kb on + strand, within CA264_11215at 2598.858 kb on - strand, within CA264_11215at 2598.858 kb on - strand, within CA264_11215at 2598.899 kb on + strand, within CA264_11215at 2598.899 kb on + strand, within CA264_11215at 2598.900 kb on - strand, within CA264_11215at 2598.900 kb on - strand, within CA264_11215at 2599.059 kb on - strand, within CA264_11215at 2599.100 kb on + strandat 2599.101 kb on - strandat 2599.198 kb on - strandat 2599.207 kb on + strandat 2599.224 kb on + strandat 2599.224 kb on + strandat 2599.232 kb on + strandat 2599.233 kb on - strandat 2599.310 kb on + strand, within CA264_11220at 2599.310 kb on + strand, within CA264_11220at 2599.311 kb on - strand, within CA264_11220at 2599.320 kb on + strand, within CA264_11220at 2599.353 kb on - strand, within CA264_11220at 2599.354 kb on + strand, within CA264_11220at 2599.392 kb on + strand, within CA264_11220at 2599.475 kb on + strand, within CA264_11220at 2599.475 kb on + strand, within CA264_11220at 2599.476 kb on - strand, within CA264_11220at 2599.560 kb on + strand, within CA264_11220at 2599.568 kb on + strand, within CA264_11220at 2599.568 kb on + strand, within CA264_11220at 2599.594 kb on + strand, within CA264_11220at 2599.671 kb on + strand, within CA264_11220at 2599.874 kb on + strand, within CA264_11220at 2599.912 kb on + strand, within CA264_11220at 2599.936 kb on - strand, within CA264_11220at 2600.027 kb on + strand, within CA264_11220at 2600.054 kb on - strand, within CA264_11220at 2600.055 kb on + strand, within CA264_11220at 2600.056 kb on - strand, within CA264_11220at 2600.081 kb on + strand, within CA264_11220at 2600.121 kb on + strandat 2600.125 kb on + strandat 2600.125 kb on + strandat 2600.126 kb on - strandat 2600.152 kb on + strandat 2600.187 kb on - strandat 2600.196 kb on + strandat 2600.197 kb on - strandat 2600.218 kb on + strandat 2600.353 kb on + strandat 2600.394 kb on + strandat 2600.395 kb on - strandat 2600.397 kb on - strandat 2600.397 kb on - strandat 2600.397 kb on - strandat 2600.397 kb on - strandat 2600.433 kb on - strand, within CA264_11225at 2600.499 kb on - strand, within CA264_11225at 2600.613 kb on + strand, within CA264_11225at 2600.640 kb on - strand, within CA264_11225at 2600.652 kb on - strand, within CA264_11225at 2600.664 kb on + strand, within CA264_11225at 2600.665 kb on - strand, within CA264_11225at 2600.669 kb on - strand, within CA264_11225at 2600.705 kb on + strand, within CA264_11225at 2600.733 kb on + strand, within CA264_11225at 2600.792 kb on - strand, within CA264_11225at 2600.861 kb on - strand, within CA264_11225at 2600.881 kb on - strand, within CA264_11225at 2600.903 kb on + strand, within CA264_11225at 2600.903 kb on + strand, within CA264_11225at 2600.903 kb on + strand, within CA264_11225at 2600.904 kb on - strand, within CA264_11225at 2600.959 kb on + strand, within CA264_11225at 2600.959 kb on + strand, within CA264_11225at 2600.959 kb on + strand, within CA264_11225at 2600.960 kb on - strand, within CA264_11225at 2600.963 kb on - strand, within CA264_11225at 2600.964 kb on + strand, within CA264_11225at 2600.965 kb on - strand, within CA264_11225at 2601.031 kb on + strand, within CA264_11225at 2601.032 kb on - strand, within CA264_11225at 2601.057 kb on + strand, within CA264_11225at 2601.094 kb on + strand, within CA264_11225at 2601.094 kb on + strand, within CA264_11225at 2601.094 kb on + strand, within CA264_11225at 2601.094 kb on + strand, within CA264_11225at 2601.095 kb on - strand, within CA264_11225at 2601.144 kb on - strand, within CA264_11225at 2601.146 kb on - strand, within CA264_11225at 2601.163 kb on + strand, within CA264_11225at 2601.170 kb on + strand, within CA264_11225at 2601.175 kb on + strand, within CA264_11225at 2601.176 kb on - strand, within CA264_11225

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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2,598,288 + CA264_11210 0.81 +1.0
2,598,288 + CA264_11210 0.81 -0.1
2,598,290 + CA264_11210 0.82 -1.0
2,598,291 - CA264_11210 0.82 -1.8
2,598,524 - -1.4
2,598,524 - -0.0
2,598,524 - +0.6
2,598,601 - -0.3
2,598,630 + -1.1
2,598,630 + -0.1
2,598,853 - CA264_11215 0.46 -0.5
2,598,857 + CA264_11215 0.47 +0.8
2,598,858 - CA264_11215 0.47 +0.2
2,598,858 - CA264_11215 0.47 -0.1
2,598,899 + CA264_11215 0.55 -1.1
2,598,899 + CA264_11215 0.55 -0.8
2,598,900 - CA264_11215 0.55 -0.7
2,598,900 - CA264_11215 0.55 -0.1
2,599,059 - CA264_11215 0.84 -1.3
2,599,100 + -0.9
2,599,101 - +0.0
2,599,198 - -0.6
2,599,207 + -0.4
2,599,224 + +0.1
2,599,224 + -1.6
2,599,232 + +0.6
2,599,233 - -0.1
2,599,310 + CA264_11220 0.10 +1.4
2,599,310 + CA264_11220 0.10 +0.1
2,599,311 - CA264_11220 0.10 +2.5
2,599,320 + CA264_11220 0.11 +0.3
2,599,353 - CA264_11220 0.15 -1.4
2,599,354 + CA264_11220 0.15 -0.5
2,599,392 + CA264_11220 0.19 +1.1
2,599,475 + CA264_11220 0.27 -0.8
2,599,475 + CA264_11220 0.27 +0.1
2,599,476 - CA264_11220 0.27 +0.4
2,599,560 + CA264_11220 0.35 +0.8
2,599,568 + CA264_11220 0.36 +0.2
2,599,568 + CA264_11220 0.36 -0.7
2,599,594 + CA264_11220 0.39 +0.3
2,599,671 + CA264_11220 0.46 -0.7
2,599,874 + CA264_11220 0.66 -0.6
2,599,912 + CA264_11220 0.70 +0.2
2,599,936 - CA264_11220 0.73 +1.3
2,600,027 + CA264_11220 0.82 -0.0
2,600,054 - CA264_11220 0.84 -0.1
2,600,055 + CA264_11220 0.84 +0.2
2,600,056 - CA264_11220 0.85 -2.3
2,600,081 + CA264_11220 0.87 +0.2
2,600,121 + +0.1
2,600,125 + +0.2
2,600,125 + +2.5
2,600,126 - +1.2
2,600,152 + -0.5
2,600,187 - +0.6
2,600,196 + -3.0
2,600,197 - -0.3
2,600,218 + -0.2
2,600,353 + -0.6
2,600,394 + +1.3
2,600,395 - +0.6
2,600,397 - -0.6
2,600,397 - +0.8
2,600,397 - +1.7
2,600,397 - +1.4
2,600,433 - CA264_11225 0.11 -0.8
2,600,499 - CA264_11225 0.15 -0.8
2,600,613 + CA264_11225 0.23 -0.4
2,600,640 - CA264_11225 0.25 -0.6
2,600,652 - CA264_11225 0.26 -1.0
2,600,664 + CA264_11225 0.27 -0.2
2,600,665 - CA264_11225 0.27 -0.1
2,600,669 - CA264_11225 0.27 +0.2
2,600,705 + CA264_11225 0.30 +0.1
2,600,733 + CA264_11225 0.32 -0.4
2,600,792 - CA264_11225 0.36 -1.5
2,600,861 - CA264_11225 0.41 -0.1
2,600,881 - CA264_11225 0.42 -1.4
2,600,903 + CA264_11225 0.44 -1.5
2,600,903 + CA264_11225 0.44 +3.0
2,600,903 + CA264_11225 0.44 +0.4
2,600,904 - CA264_11225 0.44 -1.0
2,600,959 + CA264_11225 0.48 +0.4
2,600,959 + CA264_11225 0.48 -1.8
2,600,959 + CA264_11225 0.48 -0.9
2,600,960 - CA264_11225 0.48 -0.5
2,600,963 - CA264_11225 0.48 -0.8
2,600,964 + CA264_11225 0.48 +0.7
2,600,965 - CA264_11225 0.48 -1.1
2,601,031 + CA264_11225 0.53 +0.2
2,601,032 - CA264_11225 0.53 +1.3
2,601,057 + CA264_11225 0.55 +0.2
2,601,094 + CA264_11225 0.57 -1.4
2,601,094 + CA264_11225 0.57 -0.2
2,601,094 + CA264_11225 0.57 -0.1
2,601,094 + CA264_11225 0.57 +0.9
2,601,095 - CA264_11225 0.57 +0.0
2,601,144 - CA264_11225 0.61 -0.0
2,601,146 - CA264_11225 0.61 -1.3
2,601,163 + CA264_11225 0.62 +0.2
2,601,170 + CA264_11225 0.62 +0.2
2,601,175 + CA264_11225 0.63 +1.2
2,601,176 - CA264_11225 0.63 +1.7

Or see this region's nucleotide sequence