Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10175

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10170 and CA264_10175 are separated by 143 nucleotidesCA264_10175 and CA264_10180 are separated by 148 nucleotides CA264_10170: CA264_10170 - endonuclease, at 2,363,928 to 2,365,268 _10170 CA264_10175: CA264_10175 - hypothetical protein, at 2,365,412 to 2,365,903 _10175 CA264_10180: CA264_10180 - SOS mutagenesis and repair protein UmuC, at 2,366,052 to 2,367,320 _10180 Position (kb) 2365 2366Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2364.598 kb on + strand, within CA264_10170at 2364.623 kb on + strand, within CA264_10170at 2364.636 kb on + strand, within CA264_10170at 2364.656 kb on + strand, within CA264_10170at 2364.657 kb on - strand, within CA264_10170at 2364.712 kb on + strand, within CA264_10170at 2364.768 kb on - strand, within CA264_10170at 2364.862 kb on + strand, within CA264_10170at 2364.937 kb on + strand, within CA264_10170at 2364.937 kb on + strand, within CA264_10170at 2365.255 kb on + strandat 2365.256 kb on - strandat 2365.264 kb on - strandat 2365.264 kb on - strandat 2365.270 kb on + strandat 2365.271 kb on - strandat 2365.271 kb on - strandat 2365.271 kb on - strandat 2365.271 kb on - strandat 2365.279 kb on + strandat 2365.351 kb on + strandat 2365.352 kb on - strandat 2365.708 kb on - strand, within CA264_10175at 2365.796 kb on + strand, within CA264_10175at 2365.796 kb on + strand, within CA264_10175at 2365.802 kb on - strand, within CA264_10175at 2365.818 kb on + strand, within CA264_10175at 2365.825 kb on + strand, within CA264_10175at 2365.826 kb on - strand, within CA264_10175at 2365.826 kb on - strand, within CA264_10175at 2365.870 kb on + strandat 2365.928 kb on + strandat 2365.968 kb on + strandat 2365.999 kb on - strandat 2366.089 kb on + strandat 2366.483 kb on + strand, within CA264_10180at 2366.484 kb on - strand, within CA264_10180at 2366.484 kb on - strand, within CA264_10180at 2366.484 kb on - strand, within CA264_10180at 2366.509 kb on + strand, within CA264_10180at 2366.509 kb on + strand, within CA264_10180at 2366.509 kb on + strand, within CA264_10180at 2366.510 kb on - strand, within CA264_10180at 2366.546 kb on - strand, within CA264_10180at 2366.550 kb on - strand, within CA264_10180at 2366.889 kb on - strand, within CA264_10180at 2366.889 kb on - strand, within CA264_10180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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2,364,598 + CA264_10170 0.50 -0.1
2,364,623 + CA264_10170 0.52 -1.0
2,364,636 + CA264_10170 0.53 +0.6
2,364,656 + CA264_10170 0.54 +1.2
2,364,657 - CA264_10170 0.54 +0.1
2,364,712 + CA264_10170 0.58 -0.2
2,364,768 - CA264_10170 0.63 -0.6
2,364,862 + CA264_10170 0.70 +0.9
2,364,937 + CA264_10170 0.75 +0.7
2,364,937 + CA264_10170 0.75 +0.2
2,365,255 + -0.7
2,365,256 - -0.4
2,365,264 - +0.4
2,365,264 - +0.7
2,365,270 + +1.2
2,365,271 - -1.1
2,365,271 - -1.6
2,365,271 - -0.1
2,365,271 - +1.3
2,365,279 + -0.6
2,365,351 + +1.3
2,365,352 - +0.3
2,365,708 - CA264_10175 0.60 -3.2
2,365,796 + CA264_10175 0.78 -0.7
2,365,796 + CA264_10175 0.78 -0.1
2,365,802 - CA264_10175 0.79 -1.0
2,365,818 + CA264_10175 0.83 -0.1
2,365,825 + CA264_10175 0.84 +1.2
2,365,826 - CA264_10175 0.84 +0.3
2,365,826 - CA264_10175 0.84 -0.4
2,365,870 + +0.2
2,365,928 + +0.4
2,365,968 + +0.6
2,365,999 - +0.0
2,366,089 + -0.2
2,366,483 + CA264_10180 0.34 -0.1
2,366,484 - CA264_10180 0.34 -1.3
2,366,484 - CA264_10180 0.34 -0.4
2,366,484 - CA264_10180 0.34 +0.4
2,366,509 + CA264_10180 0.36 +1.0
2,366,509 + CA264_10180 0.36 +0.6
2,366,509 + CA264_10180 0.36 +1.8
2,366,510 - CA264_10180 0.36 +0.0
2,366,546 - CA264_10180 0.39 +2.2
2,366,550 - CA264_10180 0.39 -0.1
2,366,889 - CA264_10180 0.66 -0.5
2,366,889 - CA264_10180 0.66 -0.4

Or see this region's nucleotide sequence