Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09940

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09930 and CA264_09935 are separated by 37 nucleotidesCA264_09935 and CA264_09940 are separated by 54 nucleotidesCA264_09940 and CA264_09945 are separated by 56 nucleotidesCA264_09945 and CA264_09950 are separated by 27 nucleotides CA264_09930: CA264_09930 - hypothetical protein, at 2,313,516 to 2,314,304 _09930 CA264_09935: CA264_09935 - conjugative transposon protein TraN, at 2,314,342 to 2,315,187 _09935 CA264_09940: CA264_09940 - conjugative transposon protein TraM, at 2,315,242 to 2,316,486 _09940 CA264_09945: CA264_09945 - conjugative transposon protein TraK, at 2,316,543 to 2,317,160 _09945 CA264_09950: CA264_09950 - conjugative transposon protein TraJ, at 2,317,188 to 2,318,399 _09950 Position (kb) 2315 2316 2317Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2314.261 kb on + strandat 2314.261 kb on + strandat 2314.283 kb on - strandat 2314.330 kb on + strandat 2314.331 kb on - strandat 2314.331 kb on - strandat 2314.348 kb on + strandat 2314.349 kb on - strandat 2314.396 kb on - strandat 2314.471 kb on - strand, within CA264_09935at 2314.501 kb on - strand, within CA264_09935at 2314.532 kb on + strand, within CA264_09935at 2314.532 kb on + strand, within CA264_09935at 2314.595 kb on + strand, within CA264_09935at 2314.595 kb on + strand, within CA264_09935at 2314.595 kb on + strand, within CA264_09935at 2314.596 kb on - strand, within CA264_09935at 2314.617 kb on + strand, within CA264_09935at 2315.017 kb on + strand, within CA264_09935at 2315.145 kb on + strandat 2315.212 kb on + strandat 2315.213 kb on - strandat 2315.213 kb on - strandat 2315.214 kb on + strandat 2315.215 kb on - strandat 2315.215 kb on - strandat 2315.244 kb on - strandat 2315.460 kb on - strand, within CA264_09940at 2315.460 kb on - strand, within CA264_09940at 2315.529 kb on + strand, within CA264_09940at 2315.529 kb on + strand, within CA264_09940at 2315.621 kb on - strand, within CA264_09940at 2315.786 kb on - strand, within CA264_09940at 2315.794 kb on + strand, within CA264_09940at 2315.998 kb on + strand, within CA264_09940at 2316.098 kb on + strand, within CA264_09940at 2316.099 kb on - strand, within CA264_09940at 2316.099 kb on - strand, within CA264_09940at 2316.210 kb on - strand, within CA264_09940at 2316.219 kb on + strand, within CA264_09940at 2316.219 kb on + strand, within CA264_09940at 2316.220 kb on - strand, within CA264_09940at 2316.266 kb on + strand, within CA264_09940at 2316.266 kb on + strand, within CA264_09940at 2316.269 kb on + strand, within CA264_09940at 2316.514 kb on + strandat 2316.514 kb on + strandat 2316.515 kb on - strandat 2316.515 kb on - strandat 2316.757 kb on - strand, within CA264_09945at 2316.857 kb on - strand, within CA264_09945at 2316.857 kb on - strand, within CA264_09945at 2317.016 kb on - strand, within CA264_09945at 2317.160 kb on + strandat 2317.160 kb on + strandat 2317.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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2,314,261 + +1.9
2,314,261 + -1.6
2,314,283 - -2.1
2,314,330 + +1.1
2,314,331 - -0.6
2,314,331 - -1.3
2,314,348 + +0.8
2,314,349 - -0.1
2,314,396 - +0.3
2,314,471 - CA264_09935 0.15 +0.3
2,314,501 - CA264_09935 0.19 -0.2
2,314,532 + CA264_09935 0.22 +1.3
2,314,532 + CA264_09935 0.22 +1.1
2,314,595 + CA264_09935 0.30 -0.3
2,314,595 + CA264_09935 0.30 +0.2
2,314,595 + CA264_09935 0.30 +1.8
2,314,596 - CA264_09935 0.30 -2.7
2,314,617 + CA264_09935 0.33 +2.0
2,315,017 + CA264_09935 0.80 -1.1
2,315,145 + -1.6
2,315,212 + +0.4
2,315,213 - -2.5
2,315,213 - -0.2
2,315,214 + +0.7
2,315,215 - -2.4
2,315,215 - -2.4
2,315,244 - +0.2
2,315,460 - CA264_09940 0.18 +0.6
2,315,460 - CA264_09940 0.18 -3.0
2,315,529 + CA264_09940 0.23 -1.0
2,315,529 + CA264_09940 0.23 -0.9
2,315,621 - CA264_09940 0.30 -0.1
2,315,786 - CA264_09940 0.44 +0.7
2,315,794 + CA264_09940 0.44 -0.8
2,315,998 + CA264_09940 0.61 -1.1
2,316,098 + CA264_09940 0.69 -2.0
2,316,099 - CA264_09940 0.69 +0.0
2,316,099 - CA264_09940 0.69 -0.7
2,316,210 - CA264_09940 0.78 -1.1
2,316,219 + CA264_09940 0.78 -1.5
2,316,219 + CA264_09940 0.78 -0.2
2,316,220 - CA264_09940 0.79 -0.3
2,316,266 + CA264_09940 0.82 -0.4
2,316,266 + CA264_09940 0.82 +1.7
2,316,269 + CA264_09940 0.82 -0.5
2,316,514 + +0.0
2,316,514 + -0.8
2,316,515 - -2.7
2,316,515 - -0.3
2,316,757 - CA264_09945 0.35 +0.2
2,316,857 - CA264_09945 0.51 -2.0
2,316,857 - CA264_09945 0.51 -0.3
2,317,016 - CA264_09945 0.77 -1.1
2,317,160 + -0.8
2,317,160 + -0.6
2,317,190 - -0.8

Or see this region's nucleotide sequence