Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09920 and CA264_09925 are separated by 919 nucleotides CA264_09925 and CA264_09930 are separated by 53 nucleotides CA264_09930 and CA264_09935 are separated by 37 nucleotides
CA264_09920: CA264_09920 - IS5/IS1182 family transposase, at 2,311,764 to 2,312,237
_09920
CA264_09925: CA264_09925 - hypothetical protein, at 2,313,157 to 2,313,462
_09925
CA264_09930: CA264_09930 - hypothetical protein, at 2,313,516 to 2,314,304
_09930
CA264_09935: CA264_09935 - conjugative transposon protein TraN, at 2,314,342 to 2,315,187
_09935
Position (kb)
2313
2314 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2312.299 kb on + strand at 2312.300 kb on - strand at 2312.300 kb on - strand at 2312.300 kb on - strand at 2312.302 kb on + strand at 2312.303 kb on - strand at 2312.303 kb on - strand at 2312.305 kb on + strand at 2312.306 kb on - strand at 2312.383 kb on + strand at 2312.391 kb on + strand at 2312.446 kb on - strand at 2312.477 kb on + strand at 2312.478 kb on - strand at 2312.478 kb on - strand at 2312.479 kb on + strand at 2312.480 kb on - strand at 2312.518 kb on - strand at 2312.551 kb on + strand at 2312.625 kb on - strand at 2312.702 kb on + strand at 2312.752 kb on + strand at 2312.753 kb on - strand at 2312.860 kb on - strand at 2312.880 kb on + strand at 2312.880 kb on + strand at 2312.911 kb on - strand at 2312.911 kb on - strand at 2312.953 kb on + strand at 2312.958 kb on - strand at 2313.077 kb on - strand at 2313.077 kb on - strand at 2313.083 kb on + strand at 2313.084 kb on - strand at 2313.084 kb on - strand at 2313.216 kb on - strand, within CA264_09925 at 2313.227 kb on + strand, within CA264_09925 at 2313.228 kb on - strand, within CA264_09925 at 2313.228 kb on - strand, within CA264_09925 at 2313.272 kb on + strand, within CA264_09925 at 2313.272 kb on + strand, within CA264_09925 at 2313.272 kb on + strand, within CA264_09925 at 2313.419 kb on - strand, within CA264_09925 at 2313.419 kb on - strand, within CA264_09925 at 2313.419 kb on - strand, within CA264_09925 at 2313.481 kb on - strand at 2313.692 kb on + strand, within CA264_09930 at 2313.692 kb on + strand, within CA264_09930 at 2313.692 kb on + strand, within CA264_09930 at 2313.694 kb on + strand, within CA264_09930 at 2313.694 kb on + strand, within CA264_09930 at 2313.741 kb on + strand, within CA264_09930 at 2313.741 kb on + strand, within CA264_09930 at 2313.865 kb on + strand, within CA264_09930 at 2313.865 kb on + strand, within CA264_09930 at 2313.866 kb on - strand, within CA264_09930 at 2313.893 kb on - strand, within CA264_09930 at 2313.943 kb on + strand, within CA264_09930 at 2313.944 kb on - strand, within CA264_09930 at 2314.004 kb on - strand, within CA264_09930 at 2314.022 kb on + strand, within CA264_09930 at 2314.023 kb on - strand, within CA264_09930 at 2314.023 kb on - strand, within CA264_09930 at 2314.023 kb on - strand, within CA264_09930 at 2314.042 kb on + strand, within CA264_09930 at 2314.166 kb on + strand, within CA264_09930 at 2314.172 kb on - strand, within CA264_09930 at 2314.172 kb on - strand, within CA264_09930 at 2314.172 kb on - strand, within CA264_09930 at 2314.261 kb on + strand at 2314.261 kb on + strand at 2314.283 kb on - strand at 2314.330 kb on + strand at 2314.331 kb on - strand at 2314.331 kb on - strand at 2314.348 kb on + strand at 2314.349 kb on - strand at 2314.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 2,312,299 + +0.1 2,312,300 - -0.1 2,312,300 - -0.4 2,312,300 - +0.4 2,312,302 + +0.3 2,312,303 - -0.3 2,312,303 - +0.6 2,312,305 + -0.3 2,312,306 - -0.0 2,312,383 + -0.6 2,312,391 + -2.9 2,312,446 - +0.4 2,312,477 + +0.6 2,312,478 - -2.5 2,312,478 - +0.3 2,312,479 + +0.5 2,312,480 - -0.1 2,312,518 - +1.6 2,312,551 + -0.8 2,312,625 - +0.5 2,312,702 + -0.8 2,312,752 + +0.4 2,312,753 - -0.5 2,312,860 - -1.0 2,312,880 + -0.7 2,312,880 + -0.0 2,312,911 - +0.4 2,312,911 - -2.5 2,312,953 + +0.1 2,312,958 - -2.2 2,313,077 - +0.6 2,313,077 - -0.0 2,313,083 + -0.0 2,313,084 - +2.3 2,313,084 - -0.5 2,313,216 - CA264_09925 0.19 +0.7 2,313,227 + CA264_09925 0.23 +0.5 2,313,228 - CA264_09925 0.23 -0.6 2,313,228 - CA264_09925 0.23 +1.1 2,313,272 + CA264_09925 0.38 +1.4 2,313,272 + CA264_09925 0.38 +0.6 2,313,272 + CA264_09925 0.38 +0.2 2,313,419 - CA264_09925 0.86 -0.6 2,313,419 - CA264_09925 0.86 +0.6 2,313,419 - CA264_09925 0.86 -0.2 2,313,481 - -0.1 2,313,692 + CA264_09930 0.22 +1.7 2,313,692 + CA264_09930 0.22 -1.3 2,313,692 + CA264_09930 0.22 +0.5 2,313,694 + CA264_09930 0.23 +0.5 2,313,694 + CA264_09930 0.23 +1.1 2,313,741 + CA264_09930 0.29 -0.2 2,313,741 + CA264_09930 0.29 -1.2 2,313,865 + CA264_09930 0.44 -0.7 2,313,865 + CA264_09930 0.44 -1.0 2,313,866 - CA264_09930 0.44 +0.6 2,313,893 - CA264_09930 0.48 +0.3 2,313,943 + CA264_09930 0.54 +0.2 2,313,944 - CA264_09930 0.54 -0.2 2,314,004 - CA264_09930 0.62 -0.2 2,314,022 + CA264_09930 0.64 +0.5 2,314,023 - CA264_09930 0.64 -2.1 2,314,023 - CA264_09930 0.64 -0.4 2,314,023 - CA264_09930 0.64 -1.4 2,314,042 + CA264_09930 0.67 -1.2 2,314,166 + CA264_09930 0.82 -1.6 2,314,172 - CA264_09930 0.83 -1.4 2,314,172 - CA264_09930 0.83 -0.7 2,314,172 - CA264_09930 0.83 -0.2 2,314,261 + +1.9 2,314,261 + -1.6 2,314,283 - -2.1 2,314,330 + +1.1 2,314,331 - -0.6 2,314,331 - -1.3 2,314,348 + +0.8 2,314,349 - -0.1 2,314,396 - +0.3
Or see this region's nucleotide sequence