Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08670

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08665 and CA264_08670 are separated by 481 nucleotidesCA264_08670 and CA264_08675 are separated by 276 nucleotides CA264_08665: CA264_08665 - N-acetylmuramoyl-L-alanine amidase, at 2,010,362 to 2,011,282 _08665 CA264_08670: CA264_08670 - hypothetical protein, at 2,011,764 to 2,013,023 _08670 CA264_08675: CA264_08675 - hypothetical protein, at 2,013,300 to 2,014,349 _08675 Position (kb) 2011 2012 2013 2014Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2010.855 kb on + strand, within CA264_08665at 2011.078 kb on + strand, within CA264_08665at 2011.256 kb on + strandat 2011.274 kb on + strandat 2011.274 kb on + strandat 2011.301 kb on - strandat 2011.358 kb on + strandat 2011.367 kb on - strandat 2011.547 kb on + strandat 2011.548 kb on - strandat 2011.561 kb on - strandat 2011.600 kb on + strandat 2011.603 kb on - strandat 2011.603 kb on - strandat 2011.671 kb on + strandat 2011.676 kb on + strandat 2011.676 kb on + strandat 2011.722 kb on - strandat 2011.750 kb on + strandat 2011.751 kb on - strandat 2011.751 kb on - strandat 2011.751 kb on - strandat 2011.751 kb on - strandat 2011.755 kb on + strandat 2011.755 kb on + strandat 2011.755 kb on + strandat 2011.756 kb on - strandat 2011.756 kb on - strandat 2011.757 kb on + strandat 2011.758 kb on - strandat 2011.782 kb on + strandat 2011.782 kb on + strandat 2011.782 kb on + strandat 2011.783 kb on - strandat 2011.783 kb on - strandat 2011.783 kb on - strandat 2011.783 kb on - strandat 2011.783 kb on - strandat 2011.783 kb on - strandat 2011.787 kb on - strandat 2011.819 kb on + strandat 2011.819 kb on + strandat 2011.820 kb on - strandat 2011.820 kb on - strandat 2011.948 kb on + strand, within CA264_08670at 2012.128 kb on + strand, within CA264_08670at 2012.217 kb on - strand, within CA264_08670at 2012.217 kb on - strand, within CA264_08670at 2012.221 kb on + strand, within CA264_08670at 2012.453 kb on - strand, within CA264_08670at 2012.608 kb on - strand, within CA264_08670at 2012.626 kb on + strand, within CA264_08670at 2012.812 kb on + strand, within CA264_08670at 2012.812 kb on + strand, within CA264_08670at 2012.896 kb on - strand, within CA264_08670at 2012.997 kb on - strandat 2012.997 kb on - strandat 2013.137 kb on - strandat 2013.278 kb on + strandat 2013.403 kb on - strandat 2013.542 kb on - strand, within CA264_08675at 2013.561 kb on + strand, within CA264_08675at 2013.561 kb on + strand, within CA264_08675at 2013.562 kb on - strand, within CA264_08675at 2013.562 kb on - strand, within CA264_08675at 2013.649 kb on + strand, within CA264_08675at 2013.650 kb on - strand, within CA264_08675at 2013.664 kb on + strand, within CA264_08675at 2013.667 kb on + strand, within CA264_08675at 2013.668 kb on - strand, within CA264_08675at 2013.668 kb on - strand, within CA264_08675at 2013.668 kb on - strand, within CA264_08675at 2013.688 kb on + strand, within CA264_08675at 2013.688 kb on + strand, within CA264_08675at 2013.688 kb on + strand, within CA264_08675at 2013.689 kb on - strand, within CA264_08675at 2013.689 kb on - strand, within CA264_08675at 2013.689 kb on - strand, within CA264_08675at 2013.762 kb on + strand, within CA264_08675at 2013.762 kb on + strand, within CA264_08675at 2013.762 kb on + strand, within CA264_08675at 2013.763 kb on - strand, within CA264_08675at 2013.781 kb on + strand, within CA264_08675at 2013.848 kb on + strand, within CA264_08675at 2013.848 kb on + strand, within CA264_08675at 2013.906 kb on + strand, within CA264_08675at 2014.017 kb on - strand, within CA264_08675

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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2,010,855 + CA264_08665 0.54 -0.4
2,011,078 + CA264_08665 0.78 -0.1
2,011,256 + +0.9
2,011,274 + +0.2
2,011,274 + -0.6
2,011,301 - +1.6
2,011,358 + -1.0
2,011,367 - +1.5
2,011,547 + +1.6
2,011,548 - +0.4
2,011,561 - +0.5
2,011,600 + -0.2
2,011,603 - -1.5
2,011,603 - +1.3
2,011,671 + -0.1
2,011,676 + +2.7
2,011,676 + +0.1
2,011,722 - -0.2
2,011,750 + -0.5
2,011,751 - -0.7
2,011,751 - -1.5
2,011,751 - -1.4
2,011,751 - -2.4
2,011,755 + +0.5
2,011,755 + +0.2
2,011,755 + -1.2
2,011,756 - -1.0
2,011,756 - -0.8
2,011,757 + +0.4
2,011,758 - +0.4
2,011,782 + -0.4
2,011,782 + -1.1
2,011,782 + -0.4
2,011,783 - -1.1
2,011,783 - +0.5
2,011,783 - -0.8
2,011,783 - +0.1
2,011,783 - -0.9
2,011,783 - -0.7
2,011,787 - -1.1
2,011,819 + +0.2
2,011,819 + +0.1
2,011,820 - +0.6
2,011,820 - +0.9
2,011,948 + CA264_08670 0.15 -0.2
2,012,128 + CA264_08670 0.29 -0.1
2,012,217 - CA264_08670 0.36 -1.1
2,012,217 - CA264_08670 0.36 -1.5
2,012,221 + CA264_08670 0.36 -2.0
2,012,453 - CA264_08670 0.55 +0.6
2,012,608 - CA264_08670 0.67 -0.1
2,012,626 + CA264_08670 0.68 -0.6
2,012,812 + CA264_08670 0.83 -1.1
2,012,812 + CA264_08670 0.83 -2.1
2,012,896 - CA264_08670 0.90 +0.2
2,012,997 - -0.5
2,012,997 - +0.1
2,013,137 - -0.2
2,013,278 + -1.0
2,013,403 - +0.1
2,013,542 - CA264_08675 0.23 +0.5
2,013,561 + CA264_08675 0.25 -0.5
2,013,561 + CA264_08675 0.25 -1.1
2,013,562 - CA264_08675 0.25 -0.9
2,013,562 - CA264_08675 0.25 -0.9
2,013,649 + CA264_08675 0.33 -1.8
2,013,650 - CA264_08675 0.33 +1.6
2,013,664 + CA264_08675 0.35 +0.6
2,013,667 + CA264_08675 0.35 -0.7
2,013,668 - CA264_08675 0.35 +0.8
2,013,668 - CA264_08675 0.35 +0.1
2,013,668 - CA264_08675 0.35 +0.4
2,013,688 + CA264_08675 0.37 +0.1
2,013,688 + CA264_08675 0.37 -1.0
2,013,688 + CA264_08675 0.37 +1.9
2,013,689 - CA264_08675 0.37 -0.1
2,013,689 - CA264_08675 0.37 -3.1
2,013,689 - CA264_08675 0.37 -0.6
2,013,762 + CA264_08675 0.44 +0.2
2,013,762 + CA264_08675 0.44 +1.0
2,013,762 + CA264_08675 0.44 -1.6
2,013,763 - CA264_08675 0.44 +0.8
2,013,781 + CA264_08675 0.46 -0.4
2,013,848 + CA264_08675 0.52 -0.1
2,013,848 + CA264_08675 0.52 -0.7
2,013,906 + CA264_08675 0.58 -0.2
2,014,017 - CA264_08675 0.68 -1.0

Or see this region's nucleotide sequence