Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08430 and CA264_08435 are separated by 969 nucleotides CA264_08435 and CA264_08440 are separated by 43 nucleotides
CA264_08430: CA264_08430 - hypothetical protein, at 1,953,431 to 1,954,348
_08430
CA264_08435: CA264_08435 - transcription elongation factor GreAB, at 1,955,318 to 1,955,722
_08435
CA264_08440: CA264_08440 - rod shape-determining protein, at 1,955,766 to 1,956,788
_08440
Position (kb)
1955
1956 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1954.350 kb on + strand at 1954.351 kb on - strand at 1954.355 kb on + strand at 1954.356 kb on - strand at 1954.358 kb on + strand at 1954.359 kb on - strand at 1954.520 kb on - strand at 1954.639 kb on + strand at 1954.645 kb on + strand at 1954.645 kb on + strand at 1954.646 kb on - strand at 1954.687 kb on + strand at 1954.687 kb on + strand at 1954.688 kb on - strand at 1954.688 kb on - strand at 1954.690 kb on - strand at 1954.749 kb on + strand at 1954.769 kb on + strand at 1954.821 kb on - strand at 1954.839 kb on - strand at 1954.879 kb on + strand at 1954.891 kb on - strand at 1954.902 kb on + strand at 1954.903 kb on - strand at 1955.001 kb on + strand at 1955.054 kb on + strand at 1955.054 kb on + strand at 1955.055 kb on - strand at 1955.088 kb on + strand at 1955.089 kb on - strand at 1955.089 kb on - strand at 1955.089 kb on - strand at 1955.093 kb on - strand at 1955.143 kb on - strand at 1955.303 kb on - strand at 1955.608 kb on - strand, within CA264_08435 at 1955.608 kb on - strand, within CA264_08435 at 1955.666 kb on + strand, within CA264_08435 at 1955.714 kb on + strand at 1955.714 kb on + strand at 1956.070 kb on - strand, within CA264_08440 at 1956.071 kb on + strand, within CA264_08440 at 1956.101 kb on - strand, within CA264_08440 at 1956.170 kb on - strand, within CA264_08440 at 1956.238 kb on + strand, within CA264_08440 at 1956.238 kb on + strand, within CA264_08440 at 1956.239 kb on - strand, within CA264_08440 at 1956.243 kb on - strand, within CA264_08440 at 1956.243 kb on - strand, within CA264_08440 at 1956.305 kb on + strand, within CA264_08440 at 1956.343 kb on + strand, within CA264_08440 at 1956.343 kb on + strand, within CA264_08440 at 1956.343 kb on + strand, within CA264_08440 at 1956.344 kb on - strand, within CA264_08440 at 1956.344 kb on - strand, within CA264_08440 at 1956.475 kb on + strand, within CA264_08440 at 1956.475 kb on + strand, within CA264_08440 at 1956.511 kb on - strand, within CA264_08440 at 1956.529 kb on - strand, within CA264_08440 at 1956.536 kb on + strand, within CA264_08440 at 1956.537 kb on - strand, within CA264_08440 at 1956.610 kb on + strand, within CA264_08440 at 1956.611 kb on - strand, within CA264_08440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 1,954,350 + +0.1 1,954,351 - -1.0 1,954,355 + +0.1 1,954,356 - -0.0 1,954,358 + -0.8 1,954,359 - -0.1 1,954,520 - +0.2 1,954,639 + -0.4 1,954,645 + -0.9 1,954,645 + +2.1 1,954,646 - +0.7 1,954,687 + -1.6 1,954,687 + -1.3 1,954,688 - -0.2 1,954,688 - +0.5 1,954,690 - +0.0 1,954,749 + -1.3 1,954,769 + +0.5 1,954,821 - -2.4 1,954,839 - +1.2 1,954,879 + -1.9 1,954,891 - -1.0 1,954,902 + -0.4 1,954,903 - -1.3 1,955,001 + -1.3 1,955,054 + -2.1 1,955,054 + -1.9 1,955,055 - -1.8 1,955,088 + -2.0 1,955,089 - -1.2 1,955,089 - -2.0 1,955,089 - -0.8 1,955,093 - -0.4 1,955,143 - -1.2 1,955,303 - +0.5 1,955,608 - CA264_08435 0.72 -2.7 1,955,608 - CA264_08435 0.72 -0.3 1,955,666 + CA264_08435 0.86 -1.3 1,955,714 + -2.2 1,955,714 + -1.3 1,956,070 - CA264_08440 0.30 -0.6 1,956,071 + CA264_08440 0.30 -0.4 1,956,101 - CA264_08440 0.33 +0.9 1,956,170 - CA264_08440 0.39 -1.3 1,956,238 + CA264_08440 0.46 -0.2 1,956,238 + CA264_08440 0.46 -0.5 1,956,239 - CA264_08440 0.46 +0.3 1,956,243 - CA264_08440 0.47 -0.6 1,956,243 - CA264_08440 0.47 -0.1 1,956,305 + CA264_08440 0.53 +1.5 1,956,343 + CA264_08440 0.56 -1.7 1,956,343 + CA264_08440 0.56 -0.2 1,956,343 + CA264_08440 0.56 -0.4 1,956,344 - CA264_08440 0.57 +0.8 1,956,344 - CA264_08440 0.57 +0.0 1,956,475 + CA264_08440 0.69 +0.3 1,956,475 + CA264_08440 0.69 -0.3 1,956,511 - CA264_08440 0.73 +0.0 1,956,529 - CA264_08440 0.75 -0.7 1,956,536 + CA264_08440 0.75 +0.2 1,956,537 - CA264_08440 0.75 -0.5 1,956,610 + CA264_08440 0.83 -0.9 1,956,611 - CA264_08440 0.83 +0.0
Or see this region's nucleotide sequence