Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08385

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08375 and CA264_08380 are separated by 3 nucleotidesCA264_08380 and CA264_08385 overlap by 31 nucleotidesCA264_08385 and CA264_08390 are separated by 48 nucleotides CA264_08375: CA264_08375 - CRISPR-associated protein Cas6, at 1,934,917 to 1,935,591 _08375 CA264_08380: CA264_08380 - hypothetical protein, at 1,935,595 to 1,936,395 _08380 CA264_08385: CA264_08385 - hypothetical protein, at 1,936,365 to 1,937,972 _08385 CA264_08390: CA264_08390 - type I-PGING CRISPR-associated protein Cas7/Csp1, at 1,938,021 to 1,938,923 _08390 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1935.451 kb on - strand, within CA264_08375at 1935.464 kb on + strand, within CA264_08375at 1935.465 kb on - strand, within CA264_08375at 1935.481 kb on - strand, within CA264_08375at 1935.490 kb on - strand, within CA264_08375at 1935.490 kb on - strand, within CA264_08375at 1935.490 kb on - strand, within CA264_08375at 1935.507 kb on - strand, within CA264_08375at 1935.522 kb on + strand, within CA264_08375at 1935.562 kb on - strandat 1935.637 kb on + strandat 1935.671 kb on + strandat 1935.671 kb on + strandat 1935.706 kb on - strand, within CA264_08380at 1935.843 kb on + strand, within CA264_08380at 1935.958 kb on - strand, within CA264_08380at 1935.958 kb on - strand, within CA264_08380at 1935.958 kb on - strand, within CA264_08380at 1935.963 kb on + strand, within CA264_08380at 1935.964 kb on - strand, within CA264_08380at 1935.967 kb on + strand, within CA264_08380at 1935.967 kb on + strand, within CA264_08380at 1935.968 kb on - strand, within CA264_08380at 1935.968 kb on - strand, within CA264_08380at 1935.992 kb on + strand, within CA264_08380at 1936.033 kb on + strand, within CA264_08380at 1936.034 kb on - strand, within CA264_08380at 1936.034 kb on - strand, within CA264_08380at 1936.059 kb on - strand, within CA264_08380at 1936.059 kb on - strand, within CA264_08380at 1936.105 kb on + strand, within CA264_08380at 1936.106 kb on - strand, within CA264_08380at 1936.162 kb on + strand, within CA264_08380at 1936.192 kb on + strand, within CA264_08380at 1936.192 kb on + strand, within CA264_08380at 1936.193 kb on - strand, within CA264_08380at 1936.193 kb on - strand, within CA264_08380at 1936.195 kb on + strand, within CA264_08380at 1936.195 kb on + strand, within CA264_08380at 1936.196 kb on - strand, within CA264_08380at 1936.214 kb on + strand, within CA264_08380at 1936.223 kb on - strand, within CA264_08380at 1936.268 kb on - strand, within CA264_08380at 1936.271 kb on + strand, within CA264_08380at 1936.284 kb on + strand, within CA264_08380at 1936.293 kb on + strand, within CA264_08380at 1936.294 kb on - strand, within CA264_08380at 1936.322 kb on + strandat 1936.344 kb on - strandat 1936.344 kb on - strandat 1936.346 kb on - strandat 1936.378 kb on - strandat 1936.391 kb on + strandat 1936.403 kb on - strandat 1936.502 kb on - strandat 1936.502 kb on - strandat 1936.538 kb on - strand, within CA264_08385at 1936.606 kb on - strand, within CA264_08385at 1936.610 kb on - strand, within CA264_08385at 1936.669 kb on + strand, within CA264_08385at 1936.681 kb on + strandat 1936.709 kb on + strand, within CA264_08385at 1936.709 kb on + strand, within CA264_08385at 1936.709 kb on + strand, within CA264_08385at 1936.724 kb on + strand, within CA264_08385at 1936.735 kb on + strand, within CA264_08385at 1936.735 kb on + strand, within CA264_08385at 1936.745 kb on - strand, within CA264_08385at 1936.745 kb on - strand, within CA264_08385at 1936.745 kb on - strand, within CA264_08385at 1936.755 kb on - strand, within CA264_08385at 1936.776 kb on - strand, within CA264_08385at 1936.783 kb on - strand, within CA264_08385at 1936.827 kb on - strand, within CA264_08385at 1936.893 kb on - strand, within CA264_08385at 1936.919 kb on - strand, within CA264_08385at 1936.919 kb on - strand, within CA264_08385at 1936.921 kb on - strand, within CA264_08385at 1936.921 kb on - strand, within CA264_08385at 1936.959 kb on - strand, within CA264_08385at 1936.980 kb on + strand, within CA264_08385at 1936.981 kb on - strand, within CA264_08385at 1936.987 kb on + strand, within CA264_08385at 1936.988 kb on - strand, within CA264_08385at 1936.988 kb on - strand, within CA264_08385at 1937.009 kb on + strand, within CA264_08385at 1937.013 kb on + strand, within CA264_08385at 1937.018 kb on + strand, within CA264_08385at 1937.061 kb on - strand, within CA264_08385at 1937.211 kb on - strand, within CA264_08385at 1937.249 kb on + strand, within CA264_08385at 1937.288 kb on + strand, within CA264_08385at 1937.289 kb on - strand, within CA264_08385at 1937.289 kb on - strand, within CA264_08385at 1937.289 kb on - strand, within CA264_08385at 1937.336 kb on + strand, within CA264_08385at 1937.337 kb on - strand, within CA264_08385at 1937.351 kb on - strand, within CA264_08385at 1937.366 kb on + strand, within CA264_08385at 1937.366 kb on + strand, within CA264_08385at 1937.400 kb on + strand, within CA264_08385at 1937.400 kb on + strand, within CA264_08385at 1937.454 kb on - strand, within CA264_08385at 1937.464 kb on + strand, within CA264_08385at 1937.472 kb on + strand, within CA264_08385at 1937.475 kb on - strand, within CA264_08385at 1937.481 kb on - strand, within CA264_08385at 1937.550 kb on + strand, within CA264_08385at 1937.550 kb on + strand, within CA264_08385at 1937.572 kb on + strand, within CA264_08385at 1937.580 kb on - strand, within CA264_08385at 1937.642 kb on + strand, within CA264_08385at 1937.653 kb on - strand, within CA264_08385at 1937.687 kb on + strand, within CA264_08385at 1937.687 kb on + strand, within CA264_08385at 1937.692 kb on + strand, within CA264_08385at 1937.692 kb on + strand, within CA264_08385at 1937.693 kb on - strand, within CA264_08385at 1937.711 kb on + strand, within CA264_08385at 1937.711 kb on + strand, within CA264_08385at 1937.712 kb on - strand, within CA264_08385at 1937.718 kb on - strand, within CA264_08385at 1937.718 kb on - strand, within CA264_08385at 1937.814 kb on + strandat 1937.880 kb on + strandat 1937.886 kb on - strandat 1937.886 kb on - strandat 1937.886 kb on - strandat 1937.954 kb on - strandat 1937.954 kb on - strandat 1937.982 kb on - strandat 1937.982 kb on - strandat 1938.008 kb on + strandat 1938.008 kb on + strandat 1938.142 kb on - strand, within CA264_08390at 1938.183 kb on - strand, within CA264_08390at 1938.194 kb on - strand, within CA264_08390at 1938.225 kb on + strand, within CA264_08390at 1938.225 kb on + strand, within CA264_08390at 1938.225 kb on + strand, within CA264_08390at 1938.225 kb on + strand, within CA264_08390at 1938.225 kb on + strand, within CA264_08390at 1938.225 kb on + strand, within CA264_08390at 1938.225 kb on + strand, within CA264_08390at 1938.226 kb on - strand, within CA264_08390at 1938.226 kb on - strand, within CA264_08390at 1938.230 kb on - strand, within CA264_08390at 1938.230 kb on - strand, within CA264_08390at 1938.272 kb on - strand, within CA264_08390at 1938.272 kb on - strand, within CA264_08390at 1938.283 kb on + strand, within CA264_08390at 1938.296 kb on - strand, within CA264_08390at 1938.296 kb on - strand, within CA264_08390at 1938.397 kb on + strand, within CA264_08390at 1938.463 kb on - strand, within CA264_08390at 1938.531 kb on + strand, within CA264_08390at 1938.537 kb on + strand, within CA264_08390at 1938.567 kb on + strand, within CA264_08390at 1938.587 kb on + strand, within CA264_08390at 1938.588 kb on - strand, within CA264_08390at 1938.633 kb on - strand, within CA264_08390at 1938.790 kb on + strand, within CA264_08390at 1938.790 kb on + strand, within CA264_08390at 1938.810 kb on + strand, within CA264_08390at 1938.810 kb on + strand, within CA264_08390at 1938.887 kb on - strandat 1938.930 kb on - strandat 1938.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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1,935,451 - CA264_08375 0.79 +1.9
1,935,464 + CA264_08375 0.81 -0.6
1,935,465 - CA264_08375 0.81 +2.6
1,935,481 - CA264_08375 0.84 -0.4
1,935,490 - CA264_08375 0.85 +0.4
1,935,490 - CA264_08375 0.85 -0.2
1,935,490 - CA264_08375 0.85 -0.2
1,935,507 - CA264_08375 0.87 -0.4
1,935,522 + CA264_08375 0.90 +1.2
1,935,562 - +0.6
1,935,637 + -1.1
1,935,671 + -0.0
1,935,671 + +0.1
1,935,706 - CA264_08380 0.14 +0.2
1,935,843 + CA264_08380 0.31 -1.5
1,935,958 - CA264_08380 0.45 -0.7
1,935,958 - CA264_08380 0.45 -0.2
1,935,958 - CA264_08380 0.45 -0.2
1,935,963 + CA264_08380 0.46 -2.5
1,935,964 - CA264_08380 0.46 -0.9
1,935,967 + CA264_08380 0.46 -2.7
1,935,967 + CA264_08380 0.46 -0.0
1,935,968 - CA264_08380 0.47 -0.6
1,935,968 - CA264_08380 0.47 -0.1
1,935,992 + CA264_08380 0.50 -2.1
1,936,033 + CA264_08380 0.55 -1.5
1,936,034 - CA264_08380 0.55 -1.0
1,936,034 - CA264_08380 0.55 +0.5
1,936,059 - CA264_08380 0.58 +1.5
1,936,059 - CA264_08380 0.58 +0.4
1,936,105 + CA264_08380 0.64 -1.3
1,936,106 - CA264_08380 0.64 -0.1
1,936,162 + CA264_08380 0.71 -0.0
1,936,192 + CA264_08380 0.75 -2.1
1,936,192 + CA264_08380 0.75 +0.3
1,936,193 - CA264_08380 0.75 +0.3
1,936,193 - CA264_08380 0.75 +0.5
1,936,195 + CA264_08380 0.75 -1.9
1,936,195 + CA264_08380 0.75 -2.4
1,936,196 - CA264_08380 0.75 +0.5
1,936,214 + CA264_08380 0.77 -1.9
1,936,223 - CA264_08380 0.78 -0.1
1,936,268 - CA264_08380 0.84 -1.4
1,936,271 + CA264_08380 0.84 -1.4
1,936,284 + CA264_08380 0.86 -0.4
1,936,293 + CA264_08380 0.87 -2.2
1,936,294 - CA264_08380 0.87 +1.0
1,936,322 + -2.2
1,936,344 - -0.9
1,936,344 - -0.4
1,936,346 - +0.6
1,936,378 - -0.5
1,936,391 + +0.5
1,936,403 - -0.5
1,936,502 - +1.2
1,936,502 - -1.1
1,936,538 - CA264_08385 0.11 -0.5
1,936,606 - CA264_08385 0.15 +0.6
1,936,610 - CA264_08385 0.15 -1.7
1,936,669 + CA264_08385 0.19 -1.2
1,936,681 + +1.5
1,936,709 + CA264_08385 0.21 -1.7
1,936,709 + CA264_08385 0.21 -1.2
1,936,709 + CA264_08385 0.21 -0.3
1,936,724 + CA264_08385 0.22 +0.1
1,936,735 + CA264_08385 0.23 -2.0
1,936,735 + CA264_08385 0.23 -1.5
1,936,745 - CA264_08385 0.24 +0.2
1,936,745 - CA264_08385 0.24 -0.2
1,936,745 - CA264_08385 0.24 -0.7
1,936,755 - CA264_08385 0.24 +0.2
1,936,776 - CA264_08385 0.26 -0.1
1,936,783 - CA264_08385 0.26 -0.2
1,936,827 - CA264_08385 0.29 +0.4
1,936,893 - CA264_08385 0.33 +0.1
1,936,919 - CA264_08385 0.34 -1.0
1,936,919 - CA264_08385 0.34 -0.4
1,936,921 - CA264_08385 0.35 -0.5
1,936,921 - CA264_08385 0.35 -0.9
1,936,959 - CA264_08385 0.37 -0.3
1,936,980 + CA264_08385 0.38 -0.1
1,936,981 - CA264_08385 0.38 +0.3
1,936,987 + CA264_08385 0.39 -1.1
1,936,988 - CA264_08385 0.39 -1.6
1,936,988 - CA264_08385 0.39 +1.3
1,937,009 + CA264_08385 0.40 -0.4
1,937,013 + CA264_08385 0.40 -2.2
1,937,018 + CA264_08385 0.41 -0.5
1,937,061 - CA264_08385 0.43 -2.5
1,937,211 - CA264_08385 0.53 -0.9
1,937,249 + CA264_08385 0.55 -0.9
1,937,288 + CA264_08385 0.57 -0.8
1,937,289 - CA264_08385 0.57 -0.4
1,937,289 - CA264_08385 0.57 +0.6
1,937,289 - CA264_08385 0.57 -1.8
1,937,336 + CA264_08385 0.60 -2.5
1,937,337 - CA264_08385 0.60 -1.1
1,937,351 - CA264_08385 0.61 -0.4
1,937,366 + CA264_08385 0.62 -1.1
1,937,366 + CA264_08385 0.62 -2.0
1,937,400 + CA264_08385 0.64 -0.7
1,937,400 + CA264_08385 0.64 -2.1
1,937,454 - CA264_08385 0.68 +0.1
1,937,464 + CA264_08385 0.68 -0.8
1,937,472 + CA264_08385 0.69 -1.2
1,937,475 - CA264_08385 0.69 +0.1
1,937,481 - CA264_08385 0.69 -0.5
1,937,550 + CA264_08385 0.74 -0.2
1,937,550 + CA264_08385 0.74 -0.4
1,937,572 + CA264_08385 0.75 -0.5
1,937,580 - CA264_08385 0.76 -0.5
1,937,642 + CA264_08385 0.79 +0.5
1,937,653 - CA264_08385 0.80 +0.1
1,937,687 + CA264_08385 0.82 -1.5
1,937,687 + CA264_08385 0.82 -0.5
1,937,692 + CA264_08385 0.83 -0.4
1,937,692 + CA264_08385 0.83 -1.0
1,937,693 - CA264_08385 0.83 -0.6
1,937,711 + CA264_08385 0.84 -2.1
1,937,711 + CA264_08385 0.84 -0.8
1,937,712 - CA264_08385 0.84 +0.3
1,937,718 - CA264_08385 0.84 +0.7
1,937,718 - CA264_08385 0.84 -0.4
1,937,814 + +0.7
1,937,880 + -1.1
1,937,886 - -0.8
1,937,886 - +0.9
1,937,886 - -0.7
1,937,954 - -0.5
1,937,954 - -1.0
1,937,982 - +0.3
1,937,982 - -0.3
1,938,008 + -0.4
1,938,008 + +0.3
1,938,142 - CA264_08390 0.13 +2.5
1,938,183 - CA264_08390 0.18 +1.0
1,938,194 - CA264_08390 0.19 -0.9
1,938,225 + CA264_08390 0.23 +0.5
1,938,225 + CA264_08390 0.23 -0.2
1,938,225 + CA264_08390 0.23 -0.1
1,938,225 + CA264_08390 0.23 -0.3
1,938,225 + CA264_08390 0.23 -0.2
1,938,225 + CA264_08390 0.23 -1.2
1,938,225 + CA264_08390 0.23 +0.6
1,938,226 - CA264_08390 0.23 +0.6
1,938,226 - CA264_08390 0.23 +0.1
1,938,230 - CA264_08390 0.23 -0.6
1,938,230 - CA264_08390 0.23 +0.5
1,938,272 - CA264_08390 0.28 -0.5
1,938,272 - CA264_08390 0.28 +0.9
1,938,283 + CA264_08390 0.29 -0.3
1,938,296 - CA264_08390 0.30 +0.2
1,938,296 - CA264_08390 0.30 +0.2
1,938,397 + CA264_08390 0.42 +0.2
1,938,463 - CA264_08390 0.49 -2.0
1,938,531 + CA264_08390 0.56 -1.5
1,938,537 + CA264_08390 0.57 -0.3
1,938,567 + CA264_08390 0.60 +0.7
1,938,587 + CA264_08390 0.63 -0.1
1,938,588 - CA264_08390 0.63 +3.1
1,938,633 - CA264_08390 0.68 -0.7
1,938,790 + CA264_08390 0.85 +1.0
1,938,790 + CA264_08390 0.85 -0.0
1,938,810 + CA264_08390 0.87 -2.0
1,938,810 + CA264_08390 0.87 -0.4
1,938,887 - -2.2
1,938,930 - -1.4
1,938,953 - -0.9

Or see this region's nucleotide sequence