Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08300

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08285 and CA264_08290 are separated by 5 nucleotidesCA264_08290 and CA264_08295 are separated by 7 nucleotidesCA264_08295 and CA264_08300 are separated by 143 nucleotidesCA264_08300 and CA264_08305 are separated by 137 nucleotidesCA264_08305 and CA264_08310 are separated by 165 nucleotides CA264_08285: CA264_08285 - aminotransferase, at 1,914,238 to 1,915,488 _08285 CA264_08290: CA264_08290 - Fe-S metabolism protein SufE, at 1,915,494 to 1,915,922 _08290 CA264_08295: CA264_08295 - FeS assembly SUF system protein, at 1,915,930 to 1,916,241 _08295 CA264_08300: CA264_08300 - phosphohydrolase, at 1,916,385 to 1,917,236 _08300 CA264_08305: CA264_08305 - OsmC family peroxiredoxin, at 1,917,374 to 1,917,787 _08305 CA264_08310: CA264_08310 - hypothetical protein, at 1,917,953 to 1,922,086 _08310 Position (kb) 1916 1917 1918Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1915.439 kb on + strandat 1915.482 kb on - strandat 1915.563 kb on + strand, within CA264_08290at 1915.564 kb on - strand, within CA264_08290at 1915.564 kb on - strand, within CA264_08290at 1915.569 kb on + strand, within CA264_08290at 1915.569 kb on + strand, within CA264_08290at 1915.570 kb on - strand, within CA264_08290at 1915.658 kb on - strand, within CA264_08290at 1915.747 kb on + strand, within CA264_08290at 1915.756 kb on + strand, within CA264_08290at 1915.797 kb on + strand, within CA264_08290at 1915.798 kb on - strand, within CA264_08290at 1915.920 kb on + strandat 1915.926 kb on + strandat 1915.958 kb on + strandat 1915.959 kb on - strandat 1916.004 kb on + strand, within CA264_08295at 1916.004 kb on + strand, within CA264_08295at 1916.008 kb on + strand, within CA264_08295at 1916.009 kb on - strand, within CA264_08295at 1916.025 kb on - strand, within CA264_08295at 1916.025 kb on - strand, within CA264_08295at 1916.025 kb on - strand, within CA264_08295at 1916.026 kb on + strand, within CA264_08295at 1916.063 kb on + strand, within CA264_08295at 1916.064 kb on - strand, within CA264_08295at 1916.076 kb on + strand, within CA264_08295at 1916.076 kb on + strand, within CA264_08295at 1916.121 kb on - strand, within CA264_08295at 1916.200 kb on - strand, within CA264_08295at 1916.245 kb on - strandat 1916.415 kb on - strandat 1916.473 kb on - strand, within CA264_08300at 1916.558 kb on + strand, within CA264_08300at 1916.580 kb on + strand, within CA264_08300at 1916.611 kb on + strand, within CA264_08300at 1916.758 kb on + strand, within CA264_08300at 1916.759 kb on - strand, within CA264_08300at 1916.759 kb on - strand, within CA264_08300at 1916.776 kb on + strand, within CA264_08300at 1916.777 kb on - strand, within CA264_08300at 1916.778 kb on + strand, within CA264_08300at 1916.779 kb on - strand, within CA264_08300at 1916.789 kb on + strand, within CA264_08300at 1916.806 kb on + strand, within CA264_08300at 1916.807 kb on - strand, within CA264_08300at 1916.823 kb on + strand, within CA264_08300at 1916.824 kb on - strand, within CA264_08300at 1916.825 kb on + strand, within CA264_08300at 1916.826 kb on - strand, within CA264_08300at 1916.826 kb on - strand, within CA264_08300at 1916.830 kb on + strand, within CA264_08300at 1916.911 kb on + strand, within CA264_08300at 1916.912 kb on - strand, within CA264_08300at 1916.912 kb on - strand, within CA264_08300at 1916.989 kb on + strand, within CA264_08300at 1917.020 kb on + strand, within CA264_08300at 1917.021 kb on - strand, within CA264_08300at 1917.115 kb on + strand, within CA264_08300at 1917.116 kb on - strand, within CA264_08300at 1917.150 kb on + strand, within CA264_08300at 1917.151 kb on - strandat 1917.306 kb on + strandat 1917.307 kb on - strandat 1917.338 kb on + strandat 1917.339 kb on - strandat 1917.570 kb on + strand, within CA264_08305at 1917.619 kb on + strand, within CA264_08305at 1917.749 kb on - strandat 1917.752 kb on - strandat 1917.781 kb on + strandat 1917.782 kb on - strandat 1917.786 kb on - strandat 1917.786 kb on - strandat 1917.818 kb on + strandat 1917.846 kb on + strandat 1917.847 kb on - strandat 1917.918 kb on - strandat 1917.924 kb on - strandat 1917.982 kb on + strandat 1917.988 kb on + strandat 1918.046 kb on - strandat 1918.059 kb on + strandat 1918.059 kb on + strandat 1918.060 kb on - strandat 1918.142 kb on - strandat 1918.177 kb on - strandat 1918.185 kb on - strandat 1918.198 kb on + strandat 1918.204 kb on + strandat 1918.231 kb on + strandat 1918.232 kb on - strandat 1918.232 kb on - strandat 1918.232 kb on - strandat 1918.234 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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1,915,439 + -0.0
1,915,482 - -0.5
1,915,563 + CA264_08290 0.16 -0.1
1,915,564 - CA264_08290 0.16 -0.1
1,915,564 - CA264_08290 0.16 -1.9
1,915,569 + CA264_08290 0.17 +2.5
1,915,569 + CA264_08290 0.17 +0.4
1,915,570 - CA264_08290 0.18 -0.1
1,915,658 - CA264_08290 0.38 +1.3
1,915,747 + CA264_08290 0.59 -1.4
1,915,756 + CA264_08290 0.61 +0.4
1,915,797 + CA264_08290 0.71 +0.3
1,915,798 - CA264_08290 0.71 -0.1
1,915,920 + -0.9
1,915,926 + +0.4
1,915,958 + -0.2
1,915,959 - +0.1
1,916,004 + CA264_08295 0.24 -0.5
1,916,004 + CA264_08295 0.24 -0.3
1,916,008 + CA264_08295 0.25 -0.5
1,916,009 - CA264_08295 0.25 +0.9
1,916,025 - CA264_08295 0.30 -0.7
1,916,025 - CA264_08295 0.30 -2.2
1,916,025 - CA264_08295 0.30 +0.1
1,916,026 + CA264_08295 0.31 -3.3
1,916,063 + CA264_08295 0.43 -0.5
1,916,064 - CA264_08295 0.43 +0.9
1,916,076 + CA264_08295 0.47 -0.8
1,916,076 + CA264_08295 0.47 +0.3
1,916,121 - CA264_08295 0.61 -1.0
1,916,200 - CA264_08295 0.87 -0.6
1,916,245 - -0.0
1,916,415 - +0.9
1,916,473 - CA264_08300 0.10 -0.0
1,916,558 + CA264_08300 0.20 -1.5
1,916,580 + CA264_08300 0.23 -0.1
1,916,611 + CA264_08300 0.27 +0.1
1,916,758 + CA264_08300 0.44 -0.1
1,916,759 - CA264_08300 0.44 +0.7
1,916,759 - CA264_08300 0.44 -0.2
1,916,776 + CA264_08300 0.46 +1.9
1,916,777 - CA264_08300 0.46 -0.3
1,916,778 + CA264_08300 0.46 -0.4
1,916,779 - CA264_08300 0.46 -0.3
1,916,789 + CA264_08300 0.47 -0.4
1,916,806 + CA264_08300 0.49 -1.4
1,916,807 - CA264_08300 0.50 -3.1
1,916,823 + CA264_08300 0.51 -0.1
1,916,824 - CA264_08300 0.52 +0.3
1,916,825 + CA264_08300 0.52 -0.1
1,916,826 - CA264_08300 0.52 -0.1
1,916,826 - CA264_08300 0.52 -0.9
1,916,830 + CA264_08300 0.52 +0.3
1,916,911 + CA264_08300 0.62 +0.6
1,916,912 - CA264_08300 0.62 -1.6
1,916,912 - CA264_08300 0.62 +0.6
1,916,989 + CA264_08300 0.71 +0.3
1,917,020 + CA264_08300 0.75 -0.3
1,917,021 - CA264_08300 0.75 -2.8
1,917,115 + CA264_08300 0.86 +0.0
1,917,116 - CA264_08300 0.86 -0.7
1,917,150 + CA264_08300 0.90 -0.4
1,917,151 - -0.5
1,917,306 + -2.1
1,917,307 - +0.5
1,917,338 + -0.1
1,917,339 - -0.0
1,917,570 + CA264_08305 0.47 -0.7
1,917,619 + CA264_08305 0.59 +0.8
1,917,749 - -0.5
1,917,752 - -0.1
1,917,781 + +0.3
1,917,782 - +2.2
1,917,786 - +0.0
1,917,786 - -0.9
1,917,818 + -0.1
1,917,846 + +0.4
1,917,847 - -1.1
1,917,918 - +0.6
1,917,924 - +0.1
1,917,982 + -0.8
1,917,988 + +0.3
1,918,046 - -0.1
1,918,059 + -0.4
1,918,059 + -1.2
1,918,060 - -0.6
1,918,142 - -0.5
1,918,177 - +1.3
1,918,185 - +0.2
1,918,198 + +2.5
1,918,204 + +0.3
1,918,231 + -0.3
1,918,232 - -0.1
1,918,232 - -2.5
1,918,232 - +1.2
1,918,234 - +0.4

Or see this region's nucleotide sequence